Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G28980 Arabidopsis lyrata HOM05D005319 ORTHO05D006632 0.0e+00 1555.4 826 100.0
AT4G24270 Arabidopsis thaliana HOM05D005319 ORTHO05D006632 0.0e+00 1431.4 827 93.1
Carub.0007s1678 Capsella rubella HOM05D005319 ORTHO05D006632 0.0e+00 1377.8 828 88.9
CARHR231700 Cardamine hirsuta HOM05D005319 ORTHO05D006632 0.0e+00 1317.4 825 86.4
Sp7g22260 Schrenkiella parvula HOM05D005319 ORTHO05D006632 0.0e+00 1307.4 825 85.1
Thhalv10024416m.g Eutrema salsugineum HOM05D005319 ORTHO05D006632 0.0e+00 1301.6 823 84.9
C01p19580 Brassica napus HOM05D005319 ORTHO05D006632 0.0e+00 1252.7 825 82.2
BcaNung01135 Brassica carinata HOM05D005319 ORTHO05D006632 0.0e+00 1250.3 826 82.9
BolC1t01883H Brassica oleracea HOM05D005319 ORTHO05D006632 0.0e+00 1241.1 825 81.2
BcaC09g50887 Brassica carinata HOM05D005319 ORTHO05D006632 0.0e+00 1229.9 825 80.1
A01p15600 Brassica napus HOM05D005319 ORTHO05D006632 0.0e+00 1228.4 826 81.0
BraA01t01501Z Brassica rapa HOM05D005319 ORTHO05D006632 0.0e+00 1220.7 826 80.6
Aa31LG7G10320 Aethionema arabicum HOM05D005319 ORTHO05D006632 0.0e+00 1159.1 851 76.5
THA.LOC104806623 Tarenaya hassleriana HOM05D005319 ORTHO05D006632 4.1e-305 1051.2 838 69.7
Manes.07G031200 Manihot esculenta HOM05D005319 ORTHO05D006632 3.0e-239 832.4 816 55.6
Thecc.06G020300 Theobroma cacao HOM05D005319 ORTHO05D006632 2.0e-238 829.7 793 56.7
Ciclev10000238m.g Citrus clementina HOM05D005319 ORTHO05D006632 3.1e-236 822.4 822 54.1
Atru.chr6.211 Acer truncatum HOM05D005319 ORTHO05D006632 8.0e-232 807.7 855 52.9
Hma1.2p1_0052F.1_g030050 Hydrangea macrophylla HOM05D005319 ORTHO05D006632 1.0e-231 807.4 790 53.7
Gorai.009G114100 Gossypium raimondii HOM05D005319 ORTHO05D006632 8.8e-231 804.3 783 54.7
Gorai.011G090800 Gossypium raimondii HOM05D005319 ORTHO05D006632 2.6e-230 802.7 841 53.3
Medtr8g015930 Medicago truncatula HOM05D005319 ORTHO05D006632 7.5e-230 801.2 800 52.9
Duzib192G0868 Durio zibethinus HOM05D005319 ORTHO05D006632 1.3e-229 800.4 856 53.0
Gohir.D05G110000 Gossypium hirsutum HOM05D005319 ORTHO05D006632 2.2e-229 799.7 835 52.3
Gohir.A05G109700 Gossypium hirsutum HOM05D005319 ORTHO05D006632 6.3e-229 798.1 783 54.3
Gohir.D10G083500 Gossypium hirsutum HOM05D005319 ORTHO05D006632 6.3e-229 798.1 844 53.4
Cfa004432 Carpinus fangiana HOM05D005319 ORTHO05D006632 1.4e-228 797.0 839 54.5
Potri.004G229732 Populus trichocarpa HOM05D005319 ORTHO05D006632 2.0e-227 793.1 798 53.4
Prupe.1G586100 Prunus persica HOM05D005319 ORTHO05D006632 2.0e-227 793.1 819 54.9
CSS0036760 Camellia sinensis var. sinensis HOM05D005319 ORTHO05D006632 3.5e-227 792.3 861 51.7
COL.COLO4_31114 Corchorus olitorius HOM05D005319 ORTHO05D006632 1.9e-225 786.6 794 55.0
MD15G1443600 Malus domestica HOM05D005319 ORTHO05D006632 2.5e-225 786.2 836 53.8
MD08G1248800 Malus domestica HOM05D005319 ORTHO05D006632 3.2e-225 785.8 839 54.8
TAR628G0438 Trochodendron aralioides HOM05D005319 ORTHO05D006632 5.5e-225 785.0 838 51.1
QL02p103594 Quercus lobata HOM05D005319 ORTHO05D006632 6.1e-224 781.6 835 54.7
RcHm_v2.0_Chr7g0219031 Rosa chinensis HOM05D005319 ORTHO05D006632 6.1e-224 781.6 787 55.9
Lj5g0014697 Lotus japonicus HOM05D005319 ORTHO05D006632 3.4e-222 775.8 793 51.2
CSS0030211 Camellia sinensis var. sinensis HOM05D005319 ORTHO05D006632 4.4e-222 775.4 848 52.1
TPR.G5958 Trifolium pratense HOM05D005319 ORTHO05D006632 9.8e-222 774.2 797 51.1
Sc12g0006940 Simmondsia chinensis HOM05D005319 ORTHO05D006632 2.4e-220 769.6 841 54.0
Psat1g223960 Pisum sativum HOM05D005319 ORTHO05D006632 3.1e-220 769.2 817 51.2
vmacro19823 Vaccinium macrocarpon HOM05D005319 ORTHO05D006632 7.0e-220 768.1 831 51.0
Haze_09972 Corylus avellana HOM05D005319 ORTHO05D006632 1.2e-219 767.3 848 51.9
FvH4_5g27610 Fragaria vesca HOM05D005319 ORTHO05D006632 3.5e-219 765.8 828 53.4
Nitab4.5_0003247g0020 Nicotiana tabacum HOM05D005319 ORTHO05D006632 3.5e-219 765.8 853 53.1
Glyma.16G000500 Glycine max HOM05D005319 ORTHO05D006632 4.5e-219 765.4 797 50.7
Solyc01g102970.3 Solanum lycopersicum HOM05D005319 ORTHO05D006632 4.5e-219 765.4 805 53.8
Cc02_g23690 Coffea canephora HOM05D005319 ORTHO05D006632 5.9e-219 765.0 797 54.3
CAN.G855.58 Capsicum annuum HOM05D005319 ORTHO05D006632 2.9e-218 762.7 854 53.2
Glyma.12G164200 Glycine max HOM05D005319 ORTHO05D006632 2.9e-218 762.7 799 50.8
CANSAT01G0698 Cannabis sativa HOM05D005319 ORTHO05D006632 3.8e-218 762.3 824 54.4
Sopen01g045380 Solanum pennellii HOM05D005319 ORTHO05D006632 1.2e-216 757.3 804 53.6
VMungo1127G0564 Vigna mungo HOM05D005319 ORTHO05D006632 3.6e-216 755.7 793 50.2
TWI59G0928 Tripterygium wilfordii HOM05D005319 ORTHO05D006632 8.0e-216 754.6 790 52.2
Nitab4.5_0005164g0040 Nicotiana tabacum HOM05D005319 ORTHO05D006632 6.8e-215 751.5 854 53.2
Actinidia26200 Actinidia chinensis HOM05D005319 ORTHO05D006632 1.7e-213 746.9 851 51.9
arahy.Tifrunner.gnm1.ann1.2TW5YI Arachis hypogaea HOM05D005319 ORTHO05D006632 2.2e-213 746.5 810 49.1
Phvul.006G221600 Phaseolus vulgaris HOM05D005319 ORTHO05D006632 2.2e-213 746.5 800 49.9
Lalb_Chr18g0061161 Lupinus albus HOM05D005319 ORTHO05D006632 7.8e-211 738.0 779 50.6
MSTRG.16462 Avicennia marina HOM05D005319 ORTHO05D006632 1.0e-210 737.6 852 48.1
Lj5A285G49 Lonicera japonica HOM05D005319 ORTHO05D006632 1.7e-210 736.9 827 49.8
PGR142G1786 Punica granatum HOM05D005319 ORTHO05D006632 5.0e-210 735.3 808 50.2
Rhsim05G0118000 Rhododendron simsii HOM05D005319 ORTHO05D006632 5.0e-210 735.3 813 50.1
GSVIVG01023136001 Vitis vinifera HOM05D005319 ORTHO05D006632 8.6e-210 734.6 836 53.1
Sed0027556 Sechium edule HOM05D005319 ORTHO05D006632 3.3e-209 732.6 846 48.8
unitig_8.g2963 Utricularia gibba HOM05D005319 ORTHO05D006632 3.6e-208 729.2 790 50.4
Peaxi162Scf00011g02012 Petunia axillaris HOM05D005319 ORTHO05D006632 4.7e-208 728.8 853 49.5
CsaV3_5G027480 Cucumis sativus L. HOM05D005319 ORTHO05D006632 1.2e-206 724.2 777 49.8
Nn4g24765 Nelumbo nucifera HOM05D005319 ORTHO05D006632 4.4e-206 722.2 849 47.9
FAN18G0588 Fragaria x ananassa HOM05D005319 ORTHO05D006632 1.3e-205 720.7 838 51.1
Nn5g27146 Nelumbo nucifera HOM05D005319 ORTHO05D006632 6.4e-205 718.4 822 48.8
FAN13G2205 Fragaria x ananassa HOM05D005319 ORTHO05D006632 1.9e-204 716.8 829 52.0
PSO017G2844 Papaver somniferum HOM05D005319 ORTHO05D006632 7.0e-204 714.9 804 50.4
PSO170G3892 Papaver somniferum HOM05D005319 ORTHO05D006632 1.6e-203 713.8 807 49.9
MELO3C022920.2 Cucumis melo HOM05D005319 ORTHO05D006632 2.7e-203 713.0 757 50.6
HanXRQChr03g0090101 Helianthus annuus HOM05D005319 ORTHO05D006632 3.0e-202 709.5 816 50.9
ClCG11G000090 Citrullus lanatus HOM05D005319 ORTHO05D006632 1.1e-201 707.6 779 49.4
Sabra01G0174900 Salix brachista HOM05D005319 ORTHO05D006632 5.6e-201 705.3 765 50.2
SGA_v2.0_scaffold254G45232 Striga asiatica HOM05D005319 ORTHO05D006632 1.2e-198 697.6 813 48.2
Aqoxy6G00019 Aquilegia oxysepala HOM05D005319 ORTHO05D006632 5.8e-198 695.3 811 48.1
AUR62042963 Chenopodium quinoa HOM05D005319 ORTHO05D006632 1.3e-197 694.1 792 48.6
AUR62041124 Chenopodium quinoa HOM05D005319 ORTHO05D006632 5.4e-196 688.7 855 46.3
CDE07G1780 Ceratophyllum demersum HOM05D005319 ORTHO05D006632 4.6e-195 685.6 840 46.4
ECA240G4281 Erigeron canadensis HOM05D005319 ORTHO05D006632 1.1e-193 681.0 845 48.6
FAN04G2290 Fragaria x ananassa HOM05D005319 ORTHO05D006632 3.3e-193 679.5 828 49.9
Eucgr.I02798 Eucalyptus grandis HOM05D005319 ORTHO05D006632 1.1e-188 664.5 656 53.4
Lsat_1_v5_gn_9_125320 Lactuca sativa HOM05D005319 ORTHO05D006632 2.7e-187 659.8 803 49.8
CDE04G1013 Ceratophyllum demersum HOM05D005319 ORTHO05D006632 2.1e-184 650.2 749 49.9
Cpa.g.sc173.4 Carica papaya HOM05D005319 ORTHO05D006632 5.8e-182 642.1 781 50.3
Os08g0113200 Oryza sativa ssp. japonica HOM05D005319 ORTHO05D006632 1.4e-180 637.5 794 48.1
HPP92_001202 Vanilla planifolia HOM05D005319 ORTHO05D006632 8.7e-178 628.2 796 44.7
Migut.B00712 Erythranthe guttata HOM05D005319 ORTHO05D006632 3.3e-177 626.3 614 56.0
Zm00001eb260720 Zea mays HOM05D005319 ORTHO05D006632 1.1e-175 621.3 802 43.8
Dinv29683 Davidia involucrata HOM05D005319 ORTHO05D006632 1.0e-170 604.7 744 46.6
DCAR_003273 Daucus carota HOM05D005319 ORTHO05D006632 5.3e-167 592.4 796 45.0
Prupe.2G119000 Prunus persica HOM05D005319 ORTHO05D006632 5.4e-164 582.4 819 44.3
Gohir.A10G157900 Gossypium hirsutum HOM05D005319 ORTHO05D006632 1.2e-163 581.3 609 54.8
AagrBONN_evm.TU.Sc2ySwM_228.2043 Anthoceros agrestis HOM05D005319 ORTHO05D006632 3.1e-159 566.6 862 40.6
CiPaw.05G159300 Carya illinoinensis HOM05D005319 ORTHO05D006632 9.0e-159 565.1 510 56.1
Pp3c2_22040 Physcomitrium patens HOM05D005319 ORTHO05D006632 3.4e-158 563.1 831 39.2
Mapoly0013s0201 Marchantia polymorpha HOM05D005319 ORTHO05D006632 2.5e-153 547.0 806 41.2
SMO367G0583 Selaginella moellendorffii HOM05D005319 ORTHO05D006632 3.1e-143 513.5 808 38.9
ATR1089G095 Amborella trichopoda HOM05D005319 ORTHO05D006632 4.1e-143 513.1 676 44.2
SHI04989 Sapria himalayana HOM05D005319 ORTHO05D006632 9.1e-135 485.3 581 47.0
Ca_00016_v3 Cicer arietinum L. HOM05D005319 ORTHO05D006632 2.0e-126 457.6 535 49.2
CBR_g44339 Chara braunii HOM05D005319 ORTHO05D006632 1.3e-117 428.3 790 35.9
EL10As26g24243 Beta vulgaris HOM05D005319 ORTHO05D006632 8.5e-117 425.6 386 53.6
MBI03_g21086_MAGBIO Magnolia biondii HOM05D005319 ORTHO05D006632 8.0e-115 419.1 387 57.9
C01p22600 Brassica napus HOM05D005319 ORTHO05D006632 4.5e-110 403.3 228 87.3
Actinidia01642 Actinidia chinensis HOM05D005319 ORTHO05D006632 3.1e-103 380.6 487 48.7
ECA247G0718 Erigeron canadensis HOM05D005319 ORTHO05D006632 1.4e-98 365.2 469 46.7
Oeu043602.1 Olea europaea HOM05D005319 ORTHO05D006632 2.0e-94 351.3 540 45.6
PGSC0003DMG400020717 Solanum tuberosum HOM05D005319 ORTHO05D006632 1.9e-84 318.2 392 47.7
MBI03_g34263_MAGBIO Magnolia biondii HOM05D005319 ORTHO05D006632 2.8e-83 314.3 422 44.8
EL10As26g24244 Beta vulgaris HOM05D005319 ORTHO05D006632 9.8e-81 305.8 418 47.1
Oeu043603.1 Olea europaea HOM05D005319 ORTHO05D006632 1.4e-71 275.4 479 38.4
Cre12.g546700 Chlamydomonas reinhardtii HOM05D005319 ORTHO05D006632 1.1e-68 265.8 533 31.7
BcaC09g50640 Brassica carinata HOM05D005319 ORTHO05D006632 1.4e-50 205.7 207 58.0
Ca_28127_v3 Cicer arietinum L. HOM05D005319 ORTHO05D006632 2.8e-43 181.4 205 45.9
CiPaw.05G159200 Carya illinoinensis HOM05D005319 ORTHO05D006632 3.7e-43 181.0 195 50.3
Hund15346 Selenicereus undatus HOM05D005319 ORTHO05D006632 9.0e-42 176.4 358 38.3
C01p22550 Brassica napus HOM05D005319 ORTHO05D006632 1.1e-36 159.5 104 77.9
BolC1t02188H Brassica oleracea HOM05D005319 ORTHO05D006632 1.1e-36 159.5 104 77.9
C01p19550 Brassica napus HOM05D005319 ORTHO05D006632 1.0e-29 136.3 117 65.8
PRCOL_00002327 Prasinoderma coloniale HOM05D005319 ORTHO05D006632 1.8e-29 135.6 557 24.8
MCO03G034 Micromonas commoda HOM05D005319 ORTHO05D006632 1.0e-21 109.8 247 33.2
SEGI_30405 Sequoiadendron giganteum HOM05D005319 ORTHO05D006632 4.3e-20 104.4 91 51.6
Ciclev10004084m.g Citrus clementina HOM05D005319 ORTHO05D006632 1.3e-19 102.8 80 57.5
SHI04990 Sapria himalayana HOM05D005319 ORTHO05D006632 8.2e-19 100.1 130 49.2
SHI04988 Sapria himalayana HOM05D005319 ORTHO05D006632 2.4e-18 98.6 104 49.0
Lj1A1166G72 Lonicera japonica HOM05D005319 ORTHO05D006632 5.9e-17 94.0 186 34.4
BcaNung06598 Brassica carinata HOM05D005319 ORTHO05D010222 6.3e-11 73.9 43 86.0
A03p55220 Brassica napus HOM05D005319 ORTHO05D041784 7.0e-10 70.5 45 75.6
BraA03t14581Z Brassica rapa HOM05D005319 ORTHO05D041784 7.0e-10 70.5 45 75.6
EL10Ac6g13976 Beta vulgaris HOM05D005319 ORTHO05D006632 3.5e-09 68.2 53 62.3
EL10Ac9g22556 Beta vulgaris HOM05D005319 ORTHO05D006632 3.5e-09 68.2 53 62.3
Lj6A128G22 Lonicera japonica HOM05D005319 ORTHO05D006632 5.9e-09 67.4 166 33.7
BcaC06g32892 Brassica carinata HOM05D008164 ORTHO05D010222 7.7e-09 67.0 38 86.8
Lj1C73G6 Lonicera japonica HOM05D002279 ORTHO05D002644 2.2e-08 65.5 326 26.7
SEGI_30773 Sequoiadendron giganteum HOM05D005319 ORTHO05D006632 8.5e-08 63.5 99 38.4
FvH4_5g37876 Fragaria vesca HOM05D003496 ORTHO05D003909 1.1e-07 63.2 45 68.9
Pp3c1_23160 Physcomitrium patens HOM05D002279 ORTHO05D002644 1.1e-07 63.2 218 25.2
FAN08G2337 Fragaria x ananassa HOM05D003496 ORTHO05D003909 1.9e-07 62.4 42 71.4
MBI19_g06604_MAGBIO Magnolia biondii HOM05D004811 ORTHO05D006888 1.9e-07 62.4 502 19.3
ECA240G1163 Erigeron canadensis HOM05D004811 ORTHO05D006888 3.2e-07 61.6 462 19.0
Atru.chr12.522 Acer truncatum HOM05D006053 ORTHO05D008381 4.2e-07 61.2 90 40.0
AagrBONN_evm.TU.Sc2ySwM_362.2211 Anthoceros agrestis HOM05D004811 ORTHO05D006888 4.2e-07 61.2 456 21.1
A03p55210 Brassica napus HOM05D003905 ORTHO05D005329 5.5e-07 60.8 87 46.0
BraA03t14580Z Brassica rapa HOM05D003905 ORTHO05D005329 5.5e-07 60.8 87 46.0
Cc02_g08350 Coffea canephora HOM05D006053 ORTHO05D008381 1.2e-06 59.7 94 38.3
Dinv25975 Davidia involucrata HOM05D006053 ORTHO05D008381 2.7e-06 58.5 87 39.1
MCO14G511 Micromonas commoda HOM05D002097 ORTHO05D002248 2.7e-06 58.5 86 32.6
Oeu016642.3 Olea europaea HOM05D001586 ORTHO05D001543 2.7e-06 58.5 107 37.4
Cre17.g733208 Chlamydomonas reinhardtii HOM05D002097 ORTHO05D002248 3.6e-06 58.2 79 39.2
COL.COLO4_14945 Corchorus olitorius HOM05D006053 ORTHO05D008381 4.7e-06 57.8 132 33.3
Potri.010G209701 Populus trichocarpa HOM05D006053 ORTHO05D008381 6.1e-06 57.4 113 34.5
SEGI_25586 Sequoiadendron giganteum HOM05D004811 ORTHO05D006888 8.0e-06 57.0 305 23.0
Zm00001eb001700 Zea mays HOM05D006053 ORTHO05D008381 8.0e-06 57.0 104 35.6


User provided reference genes

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