Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G28720 Arabidopsis lyrata HOM05D006001 ORTHO05D006714 1.5e-178 629.4 312 100.0
AT4G24500 Arabidopsis thaliana HOM05D006001 ORTHO05D006714 6.4e-150 534.3 312 86.5
Carub.0007s1657 Capsella rubella HOM05D006001 ORTHO05D006714 1.4e-141 506.5 320 82.2
CARHR231890 Cardamine hirsuta HOM05D006001 ORTHO05D006714 6.5e-134 481.1 319 78.7
Thhalv10025760m.g Eutrema salsugineum HOM05D006001 ORTHO05D006714 7.6e-127 457.6 320 76.9
Sp7g22490 Schrenkiella parvula HOM05D006001 ORTHO05D006714 1.6e-124 449.9 320 77.2
BcaC09g50862 Brassica carinata HOM05D006001 ORTHO05D006714 1.8e-123 446.4 326 74.5
BolC1t01909H Brassica oleracea HOM05D002298 ORTHO05D006714 5.0e-118 428.3 319 72.4
C01p19810 Brassica napus HOM05D002298 ORTHO05D006714 6.5e-118 427.9 319 72.4
A01p15870 Brassica napus HOM05D002298 ORTHO05D006714 2.5e-117 426.0 318 72.0
BraA01t01521Z Brassica rapa HOM05D002298 ORTHO05D006714 1.1e-114 417.2 320 71.2
A03p55330 Brassica napus HOM05D006001 ORTHO05D006714 1.4e-104 383.6 323 67.5
BraA03t14592Z Brassica rapa HOM05D006001 ORTHO05D006714 8.2e-97 357.8 324 65.7
BolC7t45854H Brassica oleracea HOM05D006001 ORTHO05D006714 7.7e-95 351.3 322 63.7
BcaC06g32880 Brassica carinata HOM05D006001 ORTHO05D006714 2.5e-85 319.7 316 60.8
Aa31LG4G9600 Aethionema arabicum HOM05D006001 ORTHO05D006714 1.8e-83 313.5 342 59.4
THA.LOC104806890 Tarenaya hassleriana HOM05D006001 ORTHO05D006714 1.3e-57 227.6 338 48.2
C07p53620 Brassica napus HOM05D006001 ORTHO05D006714 1.2e-47 194.5 222 56.3
THA.LOC104799788 Tarenaya hassleriana HOM05D006001 ORTHO05D006714 4.8e-36 156.0 304 42.4
TWI12G0152 Tripterygium wilfordii HOM05D006001 ORTHO05D006714 1.3e-25 121.3 328 37.2
TWI56G0486 Tripterygium wilfordii HOM05D006001 ORTHO05D006714 1.1e-21 108.2 353 34.0
Eucgr.L02666 Eucalyptus grandis HOM05D006001 ORTHO05D006714 1.9e-21 107.5 342 33.9
Thecc.08G071800 Theobroma cacao HOM05D006001 ORTHO05D006714 1.9e-21 107.5 371 34.0
GSVIVG01009188001 Vitis vinifera HOM05D006001 ORTHO05D006714 7.4e-21 105.5 369 33.3
Eucgr.H00032 Eucalyptus grandis HOM05D006001 ORTHO05D006714 3.7e-20 103.2 342 33.3
CiPaw.03G148200 Carya illinoinensis HOM05D006001 ORTHO05D006714 4.8e-20 102.8 367 33.0
Atru.chr13.1002 Acer truncatum HOM05D006001 ORTHO05D006714 1.4e-19 101.3 370 34.6
MELO3C008828.2 Cucumis melo HOM05D006001 ORTHO05D006714 1.4e-19 101.3 331 32.9
Potri.002G111500 Populus trichocarpa HOM05D006001 ORTHO05D006714 1.8e-19 100.9 347 32.3
Duzib128G1071 Durio zibethinus HOM05D006001 ORTHO05D006714 2.4e-19 100.5 381 33.9
CAN.G1700.2 Capsicum annuum HOM05D006001 ORTHO05D006714 2.0e-18 97.4 365 32.3
Cpa.g.c29936.2 Carica papaya HOM05D006001 ORTHO05D006714 2.6e-18 97.1 365 32.9
MELO3C021835.2 Cucumis melo HOM05D006001 ORTHO05D006714 2.6e-18 97.1 342 33.9
Cfa013804 Carpinus fangiana HOM05D006001 ORTHO05D006714 3.4e-18 96.7 373 32.7
Peaxi162Scf00160g00103 Petunia axillaris HOM05D006001 ORTHO05D006714 3.4e-18 96.7 377 31.3
CiPaw.07G164600 Carya illinoinensis HOM05D006001 ORTHO05D006714 4.5e-18 96.3 358 32.1
CsaV3_2G036230 Cucumis sativus L. HOM05D006001 ORTHO05D006714 5.8e-18 95.9 316 33.5
Sabra02G0088000 Salix brachista HOM05D006001 ORTHO05D006714 5.8e-18 95.9 350 31.7
PGSC0003DMG400002050 Solanum tuberosum HOM05D006001 ORTHO05D006714 5.8e-18 95.9 379 31.4
QL12p023212 Quercus lobata HOM05D006001 ORTHO05D006714 3.8e-17 93.2 350 32.3
Oeu063699.1 Olea europaea HOM05D006001 ORTHO05D006714 1.1e-16 91.7 334 32.0
QL09p017955 Quercus lobata HOM05D006001 ORTHO05D006714 5.5e-16 89.4 349 31.8
SGA_v2.0_scaffold24G10238 Striga asiatica HOM05D006001 ORTHO05D006714 7.1e-16 89.0 311 31.5
Haze_22468 Corylus avellana HOM05D006001 ORTHO05D006714 2.7e-15 87.0 381 31.2
Dinv42605 Davidia involucrata HOM05D006001 ORTHO05D006714 2.7e-15 87.0 349 33.2
Gohir.D05G322800 Gossypium hirsutum HOM05D006001 ORTHO05D006714 2.7e-15 87.0 344 32.8
Gorai.009G346500 Gossypium raimondii HOM05D006001 ORTHO05D006714 2.7e-15 87.0 340 32.9
SGA_v2.0_scaffold20G09128 Striga asiatica HOM05D006001 ORTHO05D006714 2.7e-15 87.0 318 32.4
Potri.005G153300 Populus trichocarpa HOM05D006001 ORTHO05D006714 3.5e-15 86.7 334 33.5
CANSAT11G1699 Cannabis sativa HOM05D006001 ORTHO05D006714 1.0e-14 85.1 319 34.5
Haze_22467 Corylus avellana HOM05D006001 ORTHO05D006714 1.0e-14 85.1 371 32.3
Gohir.A05G320600 Gossypium hirsutum HOM05D006001 ORTHO05D006714 1.0e-14 85.1 340 32.4
ClCG09G016810 Citrullus lanatus HOM05D006001 ORTHO05D006714 1.8e-14 84.3 338 33.4
arahy.Tifrunner.gnm1.ann1.5459VI Arachis hypogaea HOM05D006001 ORTHO05D006714 2.3e-14 84.0 312 32.7
Manes.18G058066 Manihot esculenta HOM05D006001 ORTHO05D006714 1.1e-13 81.6 349 32.1
Medtr5g066450 Medicago truncatula HOM05D006001 ORTHO05D006714 7.4e-13 79.0 331 31.7
Nitab4.5_0000354g0120 Nicotiana tabacum HOM05D006001 ORTHO05D006714 7.4e-13 79.0 358 30.4
Sc04g0007160 Simmondsia chinensis HOM05D006001 ORTHO05D006714 7.4e-13 79.0 313 32.3
Ciclev10001506m.g Citrus clementina HOM05D006001 ORTHO05D006714 9.7e-13 78.6 379 30.3
Sopen12g030020 Solanum pennellii HOM05D006001 ORTHO05D006714 9.7e-13 78.6 373 29.2
Glyma.02G215100 Glycine max HOM05D006001 ORTHO05D006714 1.6e-12 77.8 342 29.5
PSO210G5625 Papaver somniferum HOM05D006001 ORTHO05D006714 2.8e-12 77.0 319 32.0
Psat2g065160 Pisum sativum HOM05D006001 ORTHO05D006714 2.8e-12 77.0 343 32.1
Nn6g34170 Nelumbo nucifera HOM05D006001 ORTHO05D006714 8.2e-12 75.5 349 31.5
Ca_05452_v3 Cicer arietinum L. HOM05D006001 ORTHO05D006714 1.8e-11 74.3 332 30.1
Duzib106G1137 Durio zibethinus HOM05D006001 ORTHO05D006714 1.8e-11 74.3 380 30.3
PGSC0003DMG400009339 Solanum tuberosum HOM05D006001 ORTHO05D006714 1.8e-11 74.3 309 31.7
MBI16_g12475_MAGBIO Magnolia biondii HOM05D006001 ORTHO05D006714 2.4e-11 73.9 353 31.2
DCAR_023481 Daucus carota HOM05D006001 ORTHO05D006714 4.1e-11 73.2 429 27.5
Prupe.1G533200 Prunus persica HOM05D006001 ORTHO05D006714 9.0e-11 72.0 425 28.5
Sopen04g030170 Solanum pennellii HOM05D006001 ORTHO05D006714 9.0e-11 72.0 311 31.5
Hund26817 Selenicereus undatus HOM05D006001 ORTHO05D006714 2.6e-10 70.5 343 30.6
Lj4A738G22 Lonicera japonica HOM05D006001 ORTHO05D006714 3.4e-10 70.1 118 39.8
PGR042G0630 Punica granatum HOM05D006001 ORTHO05D006714 3.4e-10 70.1 350 28.0
Solyc04g076410.3 Solanum lycopersicum HOM05D006001 ORTHO05D006714 3.4e-10 70.1 309 31.4
arahy.Tifrunner.gnm1.ann1.X0SJ4P Arachis hypogaea HOM05D006001 ORTHO05D006714 4.5e-10 69.7 350 29.7
PSO170G4643 Papaver somniferum HOM05D006001 ORTHO05D006714 1.3e-09 68.2 319 31.7
Sed0021215 Sechium edule HOM05D006001 ORTHO05D006714 1.3e-09 68.2 184 33.2
Cc00_g15770 Coffea canephora HOM05D006001 ORTHO05D006714 1.7e-09 67.8 343 31.2
Lsat_1_v5_gn_3_133380 Lactuca sativa HOM05D006001 ORTHO05D006714 2.9e-09 67.0 354 29.4
Oeu034401.1 Olea europaea HOM05D006001 ORTHO05D006714 2.9e-09 67.0 350 28.0
SalBow7G4402 Salvia bowleyana HOM05D006001 ORTHO05D006714 2.9e-09 67.0 380 30.3
unitig_578.g16728 Utricularia gibba HOM05D006001 ORTHO05D006714 2.9e-09 67.0 339 28.9
Lj6g0019377 Lotus japonicus HOM05D006001 ORTHO05D006714 6.5e-09 65.9 276 28.3
TAR381G0479 Trochodendron aralioides HOM05D006001 ORTHO05D006714 2.5e-08 63.9 324 30.9
Actinidia19626 Actinidia chinensis HOM05D006001 ORTHO05D006714 5.5e-08 62.8 400 28.0
Migut.C00706 Erythranthe guttata HOM05D006001 ORTHO05D006714 5.5e-08 62.8 353 28.3
Nitab4.5_0000131g0110 Nicotiana tabacum HOM05D006001 ORTHO05D006714 7.2e-08 62.4 77 48.1
HanXRQChr03g0093751 Helianthus annuus HOM05D006001 ORTHO05D006714 9.3e-08 62.0 333 28.5
COL.COLO4_35255 Corchorus olitorius HOM05D006001 ORTHO05D006714 1.2e-07 61.6 349 28.7
MD08G1199700 Malus domestica HOM05D006001 ORTHO05D006714 1.2e-07 61.6 355 29.3
LjContig00408g0013719 Lotus japonicus HOM05D006001 ORTHO05D006714 2.7e-07 60.5 362 27.6
CSS0018086 Camellia sinensis var. sinensis HOM05D006001 ORTHO05D006714 1.3e-06 58.2 416 25.5
Glyma.14G182400 Glycine max HOM05D006001 ORTHO05D006714 3.9e-06 56.6 362 26.8
TPR.G34712 Trifolium pratense HOM05D006001 ORTHO05D006714 3.9e-06 56.6 339 27.7
Solyc12g087990.3 Solanum lycopersicum HOM05D006001 ORTHO05D006714 6.7e-06 55.8 146 32.9


User provided reference genes

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