Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G24400 Arabidopsis lyrata HOM05D005402 ORTHO05D007036 0.0e+00 1267.3 653 100.0
Carub.0007s1256 Capsella rubella HOM05D005402 ORTHO05D007036 0.0e+00 1105.1 652 88.2
AT4G28200 Arabidopsis thaliana HOM05D005402 ORTHO05D007036 0.0e+00 1086.2 653 87.7
CARHR235910 Cardamine hirsuta HOM05D005402 ORTHO05D007036 5.4e-308 1060.4 652 83.7
Sp7g26160 Schrenkiella parvula HOM05D005402 ORTHO05D007036 2.5e-305 1051.6 652 82.4
Aa31LG6G3970 Aethionema arabicum HOM05D005402 ORTHO05D007036 3.1e-287 991.5 654 78.4
C08p10670 Brassica napus HOM05D005402 ORTHO05D007036 8.4e-285 983.4 655 77.9
BolC8t48740H Brassica oleracea HOM05D005402 ORTHO05D007036 9.3e-284 979.9 655 77.7
BcaC07g38316 Brassica carinata HOM05D005402 ORTHO05D007036 1.6e-283 979.2 655 77.6
Thhalv10024642m.g Eutrema salsugineum HOM05D005402 ORTHO05D007036 2.1e-280 968.8 654 77.8
A08p20200 Brassica napus HOM05D005402 ORTHO05D007036 9.9e-278 959.9 656 76.5
BraA08t33979Z Brassica rapa HOM05D005402 ORTHO05D007036 9.9e-278 959.9 656 76.5
BcaB03g12558 Brassica carinata HOM05D005402 ORTHO05D007036 8.7e-274 946.8 658 76.0
THA.LOC104806309 Tarenaya hassleriana HOM05D005402 ORTHO05D007036 7.9e-267 923.7 653 72.7
Atru.chr10.2252 Acer truncatum HOM05D005402 ORTHO05D007036 7.0e-231 804.3 663 62.4
Thecc.06G223300 Theobroma cacao HOM05D005402 ORTHO05D007036 5.0e-229 798.1 656 61.9
Cfa000204 Carpinus fangiana HOM05D005402 ORTHO05D007036 8.5e-229 797.3 658 63.2
Ciclev10014465m.g Citrus clementina HOM05D005402 ORTHO05D007036 3.2e-228 795.4 655 62.3
Haze_06819 Corylus avellana HOM05D005402 ORTHO05D007036 6.1e-227 791.2 658 62.3
Potri.007G040000 Populus trichocarpa HOM05D005402 ORTHO05D007036 6.1e-227 791.2 660 63.6
Gohir.A05G171400 Gossypium hirsutum HOM05D005402 ORTHO05D007036 6.7e-226 787.7 656 61.6
Duzib235G0987 Durio zibethinus HOM05D005402 ORTHO05D007036 1.2e-225 786.9 657 61.8
GSVIVG01012705001 Vitis vinifera HOM05D005402 ORTHO05D007036 9.7e-225 783.9 655 60.9
Gohir.D05G174500 Gossypium hirsutum HOM05D005402 ORTHO05D007036 1.3e-224 783.5 656 61.4
Gorai.009G179800 Gossypium raimondii HOM05D005402 ORTHO05D007036 1.3e-224 783.5 656 61.6
Dinv13911 Davidia involucrata HOM05D005402 ORTHO05D007036 6.3e-224 781.2 656 61.0
TAR629G0778 Trochodendron aralioides HOM05D005402 ORTHO05D007036 1.1e-223 780.4 663 60.5
CSS0005702 Camellia sinensis var. sinensis HOM05D005402 ORTHO05D007036 1.8e-223 779.6 653 62.2
Manes.16G005300 Manihot esculenta HOM05D005402 ORTHO05D007036 7.0e-223 777.7 656 60.5
PGSC0003DMG400022060 Solanum tuberosum HOM05D005402 ORTHO05D007036 2.7e-222 775.8 654 61.2
Sopen02g011290 Solanum pennellii HOM05D005402 ORTHO05D007036 4.5e-222 775.0 654 61.2
Prupe.4G224400 Prunus persica HOM05D005402 ORTHO05D007036 6.5e-221 771.2 659 60.2
Solyc02g032920.3 Solanum lycopersicum HOM05D005402 ORTHO05D007036 2.5e-220 769.2 654 60.7
Hma1.2p1_0412F.1_g147300 Hydrangea macrophylla HOM05D005402 ORTHO05D007036 2.1e-219 766.1 657 59.8
Glyma.17G012200 Glycine max HOM05D005402 ORTHO05D007036 1.0e-218 763.8 656 59.5
Nn1g07183 Nelumbo nucifera HOM05D005402 ORTHO05D007036 2.0e-217 759.6 660 59.8
Sabra07G0036200 Salix brachista HOM05D005402 ORTHO05D007036 2.6e-217 759.2 666 60.4
COL.COLO4_31795 Corchorus olitorius HOM05D005402 ORTHO05D007036 3.4e-217 758.8 656 60.4
CAN.G128.67 Capsicum annuum HOM05D005402 ORTHO05D007036 7.5e-217 757.7 655 60.0
Oeu040335.1 Olea europaea HOM05D005402 ORTHO05D007036 9.8e-217 757.3 650 60.8
Ca_21074_v3 Cicer arietinum L. HOM05D005402 ORTHO05D007036 2.8e-216 755.7 656 58.8
arahy.Tifrunner.gnm1.ann1.I0ZCH2 Arachis hypogaea HOM05D005402 ORTHO05D007036 6.3e-216 754.6 657 59.2
PGR004G0080 Punica granatum HOM05D005402 ORTHO05D007036 1.1e-215 753.8 650 59.1
arahy.Tifrunner.gnm1.ann1.T40CTJ Arachis hypogaea HOM05D005402 ORTHO05D007036 2.4e-215 752.7 657 59.2
TPR.G36999 Trifolium pratense HOM05D005402 ORTHO05D007036 2.4e-215 752.7 655 58.5
Cc09_g01510 Coffea canephora HOM05D005402 ORTHO05D007036 3.1e-215 752.3 654 60.4
vmacro15795 Vaccinium macrocarpon HOM05D005402 ORTHO05D007036 4.1e-215 751.9 658 58.4
Nitab4.5_0004712g0050 Nicotiana tabacum HOM05D005402 ORTHO05D007036 2.0e-214 749.6 665 58.6
Glyma.07G261900 Glycine max HOM05D005402 ORTHO05D007036 4.5e-214 748.4 655 57.6
ClCG01G021860 Citrullus lanatus HOM05D005402 ORTHO05D007036 3.8e-213 745.3 651 59.0
VMungo1215G1509 Vigna mungo HOM05D005402 ORTHO05D007036 3.8e-213 745.3 656 59.0
MSTRG.7199 Avicennia marina HOM05D005402 ORTHO05D007036 4.2e-212 741.9 649 59.3
Medtr4g132340 Medicago truncatula HOM05D005402 ORTHO05D007036 3.6e-211 738.8 656 58.1
RcHm_v2.0_Chr7g0223851 Rosa chinensis HOM05D005402 ORTHO05D007036 4.7e-211 738.4 660 58.5
MELO3C007401.2 Cucumis melo HOM05D005402 ORTHO05D007036 1.0e-210 737.3 653 58.2
Migut.M01334 Erythranthe guttata HOM05D005402 ORTHO05D007036 1.0e-210 737.3 649 58.6
Nitab4.5_0000005g0240 Nicotiana tabacum HOM05D005402 ORTHO05D007036 1.4e-210 736.9 631 60.5
SalBow8G4792 Salvia bowleyana HOM05D005402 ORTHO05D007036 1.4e-210 736.9 651 58.2
Phvul.003G080200 Phaseolus vulgaris HOM05D005402 ORTHO05D007036 2.3e-210 736.1 656 57.3
CsaV3_6G048920 Cucumis sativus L. HOM05D005402 ORTHO05D007036 3.0e-210 735.7 656 58.1
Eucgr.D01347 Eucalyptus grandis HOM05D005402 ORTHO05D007036 5.2e-210 734.9 650 58.0
Peaxi162Scf00307g01422 Petunia axillaris HOM05D005402 ORTHO05D007036 8.9e-210 734.2 664 58.4
FAN18G2172 Fragaria x ananassa HOM05D005402 ORTHO05D007036 2.0e-209 733.0 663 57.0
Sed0000438 Sechium edule HOM05D005402 ORTHO05D007036 2.0e-209 733.0 656 57.8
QL05p072729 Quercus lobata HOM05D005402 ORTHO05D007036 7.5e-209 731.1 659 59.0
FAN08G3587 Fragaria x ananassa HOM05D005402 ORTHO05D007036 1.4e-207 726.9 660 56.8
Psat4g006080 Pisum sativum HOM05D005402 ORTHO05D007036 4.1e-207 725.3 657 56.9
CANSAT56G4097 Cannabis sativa HOM05D005402 ORTHO05D007036 5.4e-207 724.9 658 58.1
HanXRQChr15g0470411 Helianthus annuus HOM05D005402 ORTHO05D007036 1.2e-206 723.8 664 57.1
Lj4g0015196 Lotus japonicus HOM05D005402 ORTHO05D007036 4.5e-206 721.8 655 56.6
Lsat_1_v5_gn_7_16460 Lactuca sativa HOM05D005402 ORTHO05D007036 5.0e-205 718.4 664 55.9
DCAR_028193 Daucus carota HOM05D000001 ORTHO05D007036 3.3e-204 715.7 678 56.8
FAN04G1555 Fragaria x ananassa HOM05D005402 ORTHO05D007036 3.3e-204 715.7 660 56.2
Peaxi162Scf00394g00020 Petunia axillaris HOM05D005402 ORTHO05D007036 4.3e-204 715.3 655 58.0
FvH4_5g29980 Fragaria vesca HOM05D005402 ORTHO05D007036 9.5e-204 714.1 663 56.3
FAN13G2175 Fragaria x ananassa HOM05D005402 ORTHO05D007036 1.2e-203 713.8 660 56.4
Dinv20063 Davidia involucrata HOM05D005402 ORTHO05D007036 4.7e-203 711.8 656 58.4
PSO675G3880 Papaver somniferum HOM05D005402 ORTHO05D007036 6.1e-203 711.4 661 55.8
PSO541G1465 Papaver somniferum HOM05D005402 ORTHO05D007036 1.0e-202 710.7 661 55.8
TWI63G0339 Tripterygium wilfordii HOM05D005402 ORTHO05D007036 5.2e-202 708.4 655 57.4
MBI02_g15380_MAGBIO Magnolia biondii HOM05D005402 ORTHO05D007036 1.2e-201 707.2 681 55.1
Hund23456 Selenicereus undatus HOM05D005402 ORTHO05D007036 5.8e-201 704.9 656 54.9
MD15G1066800 Malus domestica HOM05D005402 ORTHO05D007036 2.2e-200 703.0 660 56.8
ECA236G3723 Erigeron canadensis HOM05D005402 ORTHO05D000490 3.9e-197 692.2 655 55.3
MD08G1079900 Malus domestica HOM05D005402 ORTHO05D007036 4.3e-196 688.7 656 56.1
Lalb_Chr07g0177141 Lupinus albus HOM05D005402 ORTHO05D007036 2.8e-195 686.0 657 54.3
AUR62015290 Chenopodium quinoa HOM05D005402 ORTHO05D007036 8.9e-194 681.0 658 53.2
Aqoxy1G03121 Aquilegia oxysepala HOM05D005402 ORTHO05D007036 8.3e-192 674.5 660 53.3
Lj2C266G9 Lonicera japonica HOM05D005402 ORTHO05D007036 8.1e-187 657.9 656 55.5
Os02g0103900 Oryza sativa ssp. japonica HOM05D005402 ORTHO05D007036 1.5e-185 653.7 688 50.9
AUR62032734 Chenopodium quinoa HOM05D005402 ORTHO05D007036 6.4e-184 648.3 665 50.7
Ah.10g032740 Amaranthus hybridus HOM05D005402 ORTHO05D007036 1.9e-183 646.7 653 50.7
BcaB03g12559 Brassica carinata HOM05D005402 ORTHO05D007036 5.6e-180 635.2 421 79.6
Actinidia11859 Actinidia chinensis HOM05D005402 ORTHO05D007036 6.2e-179 631.7 652 54.3
CDE05G1008 Ceratophyllum demersum HOM05D005402 ORTHO05D007036 1.1e-178 630.9 661 51.0
ATR0743G102 Amborella trichopoda HOM05D005402 ORTHO05D007036 7.6e-177 624.8 663 50.2
unitig_748.g7549 Utricularia gibba HOM05D005402 ORTHO05D007036 7.3e-172 608.2 653 52.1
HPP92_012414 Vanilla planifolia HOM05D005402 ORTHO05D007036 4.7e-171 605.5 667 49.0
CiPaw.09G093500 Carya illinoinensis HOM05D005402 ORTHO05D007036 1.0e-165 587.8 522 60.2
Hma1.2p1_0412F.1_g147310 Hydrangea macrophylla HOM05D005402 ORTHO05D007036 2.5e-156 556.6 495 58.2
Zm00001eb118290 Zea mays HOM05D005402 ORTHO05D007036 5.7e-132 475.7 523 48.9
SGA_v2.0_scaffold7G03813 Striga asiatica HOM05D005402 ORTHO05D007036 1.9e-127 460.7 485 50.5
SGA_v2.0_scaffold4G01907 Striga asiatica HOM05D005402 ORTHO05D007036 3.3e-124 449.9 625 45.1
Sc05g0009280 Simmondsia chinensis HOM05D005402 ORTHO05D007036 1.2e-121 441.4 363 62.0
Mapoly0165s0012 Marchantia polymorpha HOM05D005402 ORTHO05D007036 2.6e-121 440.3 666 38.6
EL10Ac3g06734 Beta vulgaris HOM05D005402 ORTHO05D007036 3.0e-117 426.8 368 60.1
SMO203G0067 Selaginella moellendorffii HOM05D005402 ORTHO05D007036 7.7e-105 385.6 655 34.8
Pp3c5_4450 Physcomitrium patens HOM05D005402 ORTHO05D007036 5.4e-98 362.8 673 35.1
AagrBONN_evm.TU.Sc2ySwM_228.882 Anthoceros agrestis HOM05D005402 ORTHO05D007036 9.2e-90 335.5 515 39.6
SEGI_35740 Sequoiadendron giganteum HOM05D005402 ORTHO05D007036 3.4e-84 317.0 363 46.8
Sc05g0009290 Simmondsia chinensis HOM05D005402 ORTHO05D007036 1.0e-80 305.4 282 52.1
Cpa.g.sc1199.5 Carica papaya HOM05D005402 ORTHO05D007036 3.7e-75 287.0 270 53.0
CBR_g31384 Chara braunii HOM05D005402 ORTHO05D007036 1.9e-71 274.6 759 28.5
Cre10.g442000 Chlamydomonas reinhardtii HOM05D005402 ORTHO05D007036 2.1e-62 244.6 711 27.0
CAN.G23.24 Capsicum annuum HOM05D005402 ORTHO05D007036 6.0e-57 226.5 277 45.8
EL10Ac3g06733 Beta vulgaris HOM05D005402 ORTHO05D007036 8.7e-56 222.6 352 36.1
RcHm_v2.0_Chr7g0223961 Rosa chinensis HOM05D005402 ORTHO05D007036 6.4e-51 206.5 243 45.3
RcHm_v2.0_Chr6g0291751 Rosa chinensis HOM05D005402 ORTHO05D007036 4.3e-39 167.2 217 44.2
RcHm_v2.0_Chr7g0223941 Rosa chinensis HOM05D005402 ORTHO05D007036 2.4e-29 134.8 81 74.1
RcHm_v2.0_Chr7g0223951 Rosa chinensis HOM05D005402 ORTHO05D007036 4.5e-28 130.6 134 56.7
A01p19620 Brassica napus HOM05D005402 ORTHO05D007036 2.2e-27 128.3 102 68.6
MCO01G148 Micromonas commoda HOM05D005402 ORTHO05D007036 1.4e-26 125.6 205 35.1
SHI32968 Sapria himalayana HOM05D005402 ORTHO05D007036 1.6e-25 122.1 232 34.9
CARHR228840 Cardamine hirsuta HOM05D005402 ORTHO05D007036 2.2e-22 111.7 65 86.2
Zm00001eb129750 Zea mays HOM05D005402 ORTHO05D007036 4.8e-22 110.5 214 35.0
AagrBONN_evm.TU.Sc2ySwM_228.888 Anthoceros agrestis HOM05D005402 ORTHO05D007036 6.9e-21 106.7 101 47.5
SalBow7G0548 Salvia bowleyana HOM05D005402 ORTHO05D037500 7.7e-20 103.2 112 49.1
SalBow5G5666 Salvia bowleyana HOM05D005402 ORTHO05D037500 1.4e-18 99.0 160 39.4
AagrBONN_evm.TU.Sc2ySwM_228.894 Anthoceros agrestis HOM05D005402 ORTHO05D007036 3.2e-18 97.8 86 46.5
AagrBONN_evm.TU.Sc2ySwM_228.885 Anthoceros agrestis HOM05D005402 ORTHO05D007036 2.7e-17 94.7 127 41.7
SalBow1G2367 Salvia bowleyana HOM05D005402 ORTHO05D037500 3.6e-17 94.4 79 58.2
Cfa022130 Carpinus fangiana HOM05D005402 ORTHO05D007036 3.9e-16 90.9 253 30.0
Zm00001eb238100 Zea mays HOM05D005402 ORTHO05D007036 2.8e-14 84.7 104 49.0
Hma1.2p1_0660F.1_g197590 Hydrangea macrophylla HOM05D005402 ORTHO05D007036 2.5e-10 71.6 65 53.8
VMungo1215G1513 Vigna mungo HOM05D005402 ORTHO05D433923 3.3e-07 61.2 41 78.0


User provided reference genes

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