Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G23670 Arabidopsis lyrata HOM05D006778 ORTHO05D008341 2.7e-80 302.4 202 100.0
AT4G28820 Arabidopsis thaliana HOM05D006778 ORTHO05D008341 7.5e-67 257.7 201 77.1
BcaC09g51658 Brassica carinata HOM05D006778 ORTHO05D008341 2.8e-53 212.6 202 62.9
BcaNung01362 Brassica carinata HOM05D006778 ORTHO05D008341 3.6e-53 212.2 202 63.4
Sp7g26820 Schrenkiella parvula HOM05D006778 ORTHO05D008341 6.8e-52 208.0 197 61.9
A01p09090 Brassica napus HOM05D006778 ORTHO05D008341 1.7e-47 193.4 212 57.5
Carub.0007s1182 Capsella rubella HOM05D006778 ORTHO05D008341 2.3e-47 193.0 200 62.5
CARHR236610 Cardamine hirsuta HOM05D006778 ORTHO05D008341 1.8e-44 183.3 203 62.6
BolC1t01026H Brassica oleracea HOM05D006778 ORTHO05D008341 1.5e-43 180.3 212 55.7
Thhalv10026155m.g Eutrema salsugineum HOM05D006778 ORTHO05D008341 2.6e-43 179.5 205 62.4
C01p10640 Brassica napus HOM05D006778 ORTHO05D008341 1.4e-41 173.7 208 54.8
THA.LOC104820057 Tarenaya hassleriana HOM05D006778 ORTHO05D008341 8.7e-39 164.5 195 50.3
BraA01t00857Z Brassica rapa HOM05D006778 ORTHO05D008341 2.4e-36 156.4 201 52.2
A03p58430 Brassica napus HOM05D006778 ORTHO05D008341 1.3e-34 150.6 229 45.9
BolC7t46124H Brassica oleracea HOM05D006778 ORTHO05D008341 6.0e-32 141.7 212 53.3
C07p56450 Brassica napus HOM05D006778 ORTHO05D008341 2.3e-31 139.8 212 52.8
Cpa.g.sc8.198 Carica papaya HOM05D006778 ORTHO05D008341 3.4e-27 125.9 195 41.5
Aa31LG2G21570 Aethionema arabicum HOM05D006778 ORTHO05D008341 2.7e-24 116.3 229 39.7
Thecc.01G232400 Theobroma cacao HOM05D006778 ORTHO05D008341 2.7e-24 116.3 187 55.1
Manes.12G043800 Manihot esculenta HOM05D006778 ORTHO05D008341 3.5e-24 115.9 188 41.5
Cfa002523 Carpinus fangiana HOM05D006778 ORTHO05D008341 6.0e-24 115.2 193 41.5
CiPaw.03G152900 Carya illinoinensis HOM05D006778 ORTHO05D008341 1.0e-23 114.4 188 42.0
Lj3g0024250 Lotus japonicus HOM05D006778 ORTHO05D008341 1.3e-23 114.0 184 40.8
FAN15G2222 Fragaria x ananassa HOM05D006778 ORTHO05D008341 2.3e-23 113.2 187 40.6
Glyma.13G130200 Glycine max HOM05D006778 ORTHO05D008341 6.7e-23 111.7 183 41.0
Phvul.007G156300 Phaseolus vulgaris HOM05D006778 ORTHO05D008341 6.7e-23 111.7 187 40.1
Glyma.10G042900 Glycine max HOM05D006778 ORTHO05D008341 1.1e-22 110.9 187 41.2
QL07p037469 Quercus lobata HOM05D006778 ORTHO05D008341 1.1e-22 110.9 203 40.4
TAR362G0656 Trochodendron aralioides HOM05D006778 ORTHO05D008341 1.1e-22 110.9 187 39.0
Sabra02G0191900 Salix brachista HOM05D006778 ORTHO05D008341 1.5e-22 110.5 186 40.9
Duzib133G1327 Durio zibethinus HOM05D006778 ORTHO05D008341 1.9e-22 110.2 182 48.9
Gohir.A08G193200 Gossypium hirsutum HOM05D006778 ORTHO05D008341 2.5e-22 109.8 182 47.3
Gohir.D08G211201 Gossypium hirsutum HOM05D006778 ORTHO05D008341 2.5e-22 109.8 188 38.3
MD05G1182200 Malus domestica HOM05D006778 ORTHO05D008341 3.3e-22 109.4 198 39.9
Prupe.8G209000 Prunus persica HOM05D006778 ORTHO05D008341 3.3e-22 109.4 186 39.2
Potri.002G252700 Populus trichocarpa HOM05D006778 ORTHO05D008341 4.3e-22 109.0 187 41.2
FvH4_2g19780 Fragaria vesca HOM05D006778 ORTHO05D008341 5.6e-22 108.6 198 38.9
Gorai.004G223900 Gossypium raimondii HOM05D006778 ORTHO05D008341 5.6e-22 108.6 198 36.9
RcHm_v2.0_Chr6g0285481 Rosa chinensis HOM05D006778 ORTHO05D008341 5.6e-22 108.6 195 39.5
Lj5g0022938 Lotus japonicus HOM05D006778 ORTHO05D008341 7.4e-22 108.2 187 41.2
CiPaw.04G108200 Carya illinoinensis HOM05D006778 ORTHO05D008341 9.6e-22 107.8 190 46.3
Actinidia37573 Actinidia chinensis HOM05D006778 ORTHO05D008341 1.3e-21 107.5 187 39.0
Psat6g064720 Pisum sativum HOM05D006778 ORTHO05D008341 1.3e-21 107.5 189 45.5
GSVIVG01028519001 Vitis vinifera HOM05D006778 ORTHO05D008341 1.3e-21 107.5 188 38.3
AUR62031811 Chenopodium quinoa HOM05D006778 ORTHO05D008341 4.8e-21 105.5 184 50.5
Migut.D00505 Erythranthe guttata HOM05D006778 ORTHO05D008341 4.8e-21 105.5 190 36.3
Pp3c19_5220 Physcomitrium patens HOM05D006778 ORTHO05D008341 4.8e-21 105.5 191 35.1
SGA_v2.0_scaffold8G04666 Striga asiatica HOM05D006778 ORTHO05D008341 6.2e-21 105.1 186 36.0
Lalb_Chr21g0314231 Lupinus albus HOM05D006778 ORTHO05D008341 1.4e-20 104.0 197 40.1
ECA247G0226 Erigeron canadensis HOM05D000070 ORTHO05D003190 2.4e-20 103.2 192 37.5
Mapoly0102s0014 Marchantia polymorpha HOM05D006778 ORTHO05D008341 5.3e-20 102.1 190 34.2
Medtr1g069150 Medicago truncatula HOM05D006778 ORTHO05D008341 5.3e-20 102.1 187 46.0
Nn1g03098 Nelumbo nucifera HOM05D006778 ORTHO05D008341 6.9e-20 101.7 189 38.6
CANSAT01G2408 Cannabis sativa HOM05D006778 ORTHO05D008341 1.2e-19 100.9 189 36.0
DCAR_012626 Daucus carota HOM05D006778 ORTHO05D008341 1.2e-19 100.9 194 35.1
ATR0787G018 Amborella trichopoda HOM05D006778 ORTHO05D008341 2.0e-19 100.1 184 35.9
Sed0012724 Sechium edule HOM05D006778 ORTHO05D008341 2.6e-19 99.8 186 39.8
arahy.Tifrunner.gnm1.ann1.01AYHN Arachis hypogaea HOM05D006778 ORTHO05D008341 4.5e-19 99.0 191 36.1
arahy.Tifrunner.gnm1.ann1.PE83GC Arachis hypogaea HOM05D006778 ORTHO05D008341 5.8e-19 98.6 191 36.1
CANSAT01G3118 Cannabis sativa HOM05D006778 ORTHO05D008341 5.8e-19 98.6 189 35.4
Rhsim13G0042100 Rhododendron simsii HOM05D006778 ORTHO05D008341 5.8e-19 98.6 190 35.3
vmacro02733 Vaccinium macrocarpon HOM05D006778 ORTHO05D008341 7.6e-19 98.2 190 42.6
ClCG07G001620 Citrullus lanatus HOM05D006778 ORTHO05D008341 1.0e-18 97.8 186 38.2
TPR.G33801 Trifolium pratense HOM05D006778 ORTHO05D008341 1.0e-18 97.8 187 36.9
Nitab4.5_0003180g0010 Nicotiana tabacum HOM05D006778 ORTHO05D008341 1.3e-18 97.4 190 35.8
Nitab4.5_0001740g0070 Nicotiana tabacum HOM05D006778 ORTHO05D008341 2.2e-18 96.7 191 37.2
CAN.G941.43 Capsicum annuum HOM05D006778 ORTHO05D008341 3.8e-18 95.9 188 34.0
TWI14G0487 Tripterygium wilfordii HOM05D006778 ORTHO05D008341 4.9e-18 95.5 191 53.9
Cc01_g17420 Coffea canephora HOM05D006778 ORTHO05D008341 6.5e-18 95.1 186 34.9
FAN24G1005 Fragaria x ananassa HOM05D006778 ORTHO05D008341 6.5e-18 95.1 207 34.8
Solyc06g008020.3 Solanum lycopersicum HOM05D006778 ORTHO05D008341 6.5e-18 95.1 189 33.9
MELO3C026499.2 Cucumis melo HOM05D006778 ORTHO05D008341 8.4e-18 94.7 196 38.3
COL.COLO4_28579 Corchorus olitorius HOM05D006778 ORTHO05D008341 1.4e-17 94.0 187 36.4
CsaV3_6G036140 Cucumis sativus L. HOM05D006778 ORTHO05D008341 1.9e-17 93.6 195 37.9
EL10Ac7g17819 Beta vulgaris HOM05D006778 ORTHO05D008341 4.2e-17 92.4 182 33.5
Aqoxy2G03836 Aquilegia oxysepala HOM05D006778 ORTHO05D008341 9.3e-17 91.3 187 32.1
PGR044G1830 Punica granatum HOM05D006778 ORTHO05D008341 1.6e-16 90.5 191 33.0
CDE06G1811 Ceratophyllum demersum HOM05D006778 ORTHO05D008341 6.0e-16 88.6 196 33.7
HPP92_014070 Vanilla planifolia HOM05D006778 ORTHO05D008341 1.0e-15 87.8 195 32.8
BraA03t14903Z Brassica rapa HOM05D006778 ORTHO05D008341 1.3e-15 87.4 185 38.9
Sopen06g002860 Solanum pennellii HOM05D006778 ORTHO05D008341 5.1e-15 85.5 189 32.3
SMO111G0074 Selaginella moellendorffii HOM05D006778 ORTHO05D008341 2.5e-14 83.2 194 30.4
CBR_g29688 Chara braunii HOM05D006778 ORTHO05D008341 5.7e-14 82.0 193 31.1
PGR044G0410 Punica granatum HOM05D006778 ORTHO05D008341 9.6e-14 81.3 190 32.1
Haze_24755 Corylus avellana HOM05D006778 ORTHO05D008341 6.2e-13 78.6 77 57.1
Haze_24757 Corylus avellana HOM05D006778 ORTHO05D008341 6.2e-13 78.6 77 57.1
VMungo0720G2677 Vigna mungo HOM05D006778 ORTHO05D008341 1.8e-12 77.0 71 59.2
CDE07G0370 Ceratophyllum demersum HOM05D006778 ORTHO05D008341 1.5e-11 73.9 192 31.8
AUR62008897 Chenopodium quinoa HOM05D006778 ORTHO05D008341 7.6e-11 71.6 164 46.3
Atru.chr5.1931 Acer truncatum HOM05D006778 ORTHO05D008341 1.3e-10 70.9 67 58.2
Ca_09622_v3 Cicer arietinum L. HOM05D006778 ORTHO05D008341 8.4e-10 68.2 62 58.1
Actinidia30101 Actinidia chinensis HOM05D006778 ORTHO05D008341 1.1e-09 67.8 69 55.1
CSS0042066 Camellia sinensis var. sinensis HOM05D006778 ORTHO05D008341 3.2e-09 66.2 206 27.2
PSO017G3634 Papaver somniferum HOM05D006778 ORTHO05D008341 4.2e-09 65.9 72 47.2
Dinv19236 Davidia involucrata HOM05D006778 ORTHO05D008341 7.1e-09 65.1 163 39.3
Hma1.2p1_1858F.1_g305520 Hydrangea macrophylla HOM05D006778 ORTHO05D008341 9.3e-09 64.7 41 63.4
Zm00001eb149030 Zea mays HOM05D006778 ORTHO05D008341 9.3e-09 64.7 188 26.6
PSO063G2427 Papaver somniferum HOM05D006778 ORTHO05D008341 1.6e-08 63.9 72 47.2
Sed0026958 Sechium edule HOM05D006778 ORTHO05D008341 1.6e-08 63.9 65 56.9
Hund05528 Selenicereus undatus HOM05D006778 ORTHO05D008341 1.6e-08 63.9 85 47.1
Sc17g0002480 Simmondsia chinensis HOM05D006778 ORTHO05D008341 1.6e-08 63.9 146 35.6
SalBow4G2567 Salvia bowleyana HOM05D006778 ORTHO05D008341 2.7e-08 63.2 52 61.5
AagrBONN_evm.TU.Sc2ySwM_228.3325 Anthoceros agrestis HOM05D006778 ORTHO05D008341 3.5e-08 62.8 184 28.3
MCO09G744 Micromonas commoda HOM05D004020 ORTHO05D004735 6.1e-08 62.0 201 26.9
MSTRG.18371 Avicennia marina HOM05D006778 ORTHO05D008341 7.9e-08 61.6 60 45.0
Peaxi162Scf00499g00413 Petunia axillaris HOM05D006778 ORTHO05D008341 7.9e-08 61.6 76 44.7
Lsat_1_v5_gn_9_11140 Lactuca sativa HOM05D006778 ORTHO05D008341 1.3e-07 60.8 64 53.1
MD10G1170500 Malus domestica HOM05D006778 ORTHO05D008341 1.3e-07 60.8 58 56.9
PGSC0003DMG400014691 Solanum tuberosum HOM05D006778 ORTHO05D008341 1.8e-07 60.5 168 30.4
MBI11_g20194_MAGBIO Magnolia biondii HOM05D006778 ORTHO05D008341 2.3e-07 60.1 53 60.4
SEGI_27672 Sequoiadendron giganteum HOM05D006778 ORTHO05D008341 3.0e-07 59.7 59 61.0
Gohir.A05G416601 Gossypium hirsutum HOM05D006778 ORTHO05D008341 3.3e-06 56.2 68 48.5
Gohir.A05G417001 Gossypium hirsutum HOM05D006778 ORTHO05D008341 3.3e-06 56.2 68 48.5
Gorai.012G000200 Gossypium raimondii HOM05D006778 ORTHO05D008341 3.3e-06 56.2 68 48.5
Gohir.D08G007200 Gossypium hirsutum HOM05D006778 ORTHO05D008341 4.3e-06 55.8 68 48.5


User provided reference genes

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