Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G17680 Arabidopsis lyrata HOM05D004087 ORTHO05D004787 1.8e-103 379.4 209 100.0
Carub.0007s0665 Capsella rubella HOM05D004087 ORTHO05D004787 2.6e-94 349.0 209 89.0
AT4G33780 Arabidopsis thaliana HOM05D004087 ORTHO05D004787 5.7e-94 347.8 209 93.8
Sp7g31520 Schrenkiella parvula HOM05D004087 ORTHO05D004787 6.3e-93 344.4 209 90.4
CARHR241870 Cardamine hirsuta HOM05D004087 ORTHO05D004787 5.9e-91 337.8 210 91.4
Thhalv10026262m.g Eutrema salsugineum HOM05D004087 ORTHO05D004787 1.1e-89 333.6 209 90.9
BcaNung04672 Brassica carinata HOM05D004087 ORTHO05D004787 1.3e-82 310.1 212 84.4
BraA01t00439Z Brassica rapa HOM05D004087 ORTHO05D004787 6.6e-82 307.8 210 84.8
C07p59880 Brassica napus HOM05D004087 ORTHO05D004787 4.2e-81 305.1 212 84.0
C01p04920 Brassica napus HOM05D004087 ORTHO05D004787 5.5e-81 304.7 211 82.9
Aa31sc355G20 Aethionema arabicum HOM05D004087 ORTHO05D004787 6.1e-80 301.2 210 82.9
BolC1t00476H Brassica oleracea HOM05D004087 ORTHO05D004787 1.5e-78 296.6 206 82.5
BolC7t46432H Brassica oleracea HOM05D004087 ORTHO05D004787 3.1e-71 272.3 212 77.8
BraA03t15307Z Brassica rapa HOM05D004087 ORTHO05D004787 4.0e-71 271.9 212 79.2
A03p62320 Brassica napus HOM05D004087 ORTHO05D004787 1.5e-70 270.0 212 77.8
THA.LOC104807209 Tarenaya hassleriana HOM05D004087 ORTHO05D004787 3.7e-69 265.4 212 70.8
BcaNung02921 Brassica carinata HOM05D004087 ORTHO05D004787 4.9e-61 238.4 151 88.7
BcaNung04326 Brassica carinata HOM05D004087 ORTHO05D004787 3.5e-59 232.3 150 88.0
BcaC09g52189 Brassica carinata HOM05D000477 ORTHO05D000338 5.2e-55 218.4 134 91.8
COL.COLO4_32481 Corchorus olitorius HOM05D004087 ORTHO05D004787 4.1e-52 208.8 209 61.2
A01p04540 Brassica napus HOM05D004087 ORTHO05D004787 6.0e-51 204.9 158 78.5
Duzib132G0587 Durio zibethinus HOM05D004087 ORTHO05D004787 1.0e-50 204.1 189 64.6
Thecc.02G120300 Theobroma cacao HOM05D004087 ORTHO05D004787 3.9e-50 202.2 193 64.2
CiPaw.05G021000 Carya illinoinensis HOM05D004087 ORTHO05D004787 8.6e-50 201.1 210 60.0
Gohir.A03G180900 Gossypium hirsutum HOM05D003497 ORTHO05D003964 7.3e-49 198.0 202 61.9
Atru.chr5.2274 Acer truncatum HOM05D004087 ORTHO05D004787 2.8e-48 196.1 198 61.6
Gohir.D02G203142 Gossypium hirsutum HOM05D003497 ORTHO05D004787 3.6e-48 195.7 202 61.4
Gorai.005G229700 Gossypium raimondii HOM05D003497 ORTHO05D003964 1.1e-47 194.1 202 60.9
TAR628G1056 Trochodendron aralioides HOM05D000194 ORTHO05D000069 3.1e-47 192.6 176 61.4
FAN27G0771 Fragaria x ananassa HOM05D004087 ORTHO05D004787 5.2e-47 191.8 220 54.5
ClCG02G007130 Citrullus lanatus HOM05D004087 ORTHO05D004787 1.5e-46 190.3 198 58.6
Eucgr.G01187 Eucalyptus grandis HOM05D004087 ORTHO05D004787 7.6e-46 188.0 185 57.3
FAN20G2318 Fragaria x ananassa HOM05D004087 ORTHO05D004787 9.9e-46 187.6 221 54.3
RcHm_v2.0_Chr6g0248281 Rosa chinensis HOM05D004087 ORTHO05D004787 2.2e-45 186.4 214 53.7
Ciclev10029333m.g Citrus clementina HOM05D004087 ORTHO05D004787 4.9e-45 185.3 190 59.5
FvH4_2g03150 Fragaria vesca HOM05D004087 ORTHO05D004787 4.9e-45 185.3 224 53.6
PGR042G2373 Punica granatum HOM05D004087 ORTHO05D004787 4.9e-45 185.3 164 60.4
CsaV3_7G007690 Cucumis sativus L. HOM05D004087 ORTHO05D004787 6.4e-45 184.9 211 57.8
FAN24G1045 Fragaria x ananassa HOM05D004087 ORTHO05D004787 6.4e-45 184.9 223 53.4
Cfa004696 Carpinus fangiana HOM05D004087 ORTHO05D004787 8.4e-45 184.5 208 56.2
FAN15G0324 Fragaria x ananassa HOM05D004087 ORTHO05D004787 8.4e-45 184.5 224 53.6
Sed0019763 Sechium edule HOM05D004087 ORTHO05D004787 2.4e-44 183.0 213 56.8
GSVIVG01037047001 Vitis vinifera HOM05D004087 ORTHO05D004787 2.4e-44 183.0 205 58.5
Hma1.2p1_0661F.1_g198070 Hydrangea macrophylla HOM05D004087 ORTHO05D004787 1.2e-43 180.6 180 59.4
Nn5g30675 Nelumbo nucifera HOM05D004087 ORTHO05D004787 2.7e-43 179.5 162 62.3
Prupe.8G150800 Prunus persica HOM05D004087 ORTHO05D004787 3.5e-43 179.1 228 51.3
Potri.001G289600 Populus trichocarpa HOM05D004087 ORTHO05D004787 1.0e-42 177.6 208 55.8
CANSAT25G1673 Cannabis sativa HOM05D004087 ORTHO05D004787 1.7e-42 176.8 202 54.5
Actinidia00355 Actinidia chinensis HOM05D004087 ORTHO05D004787 3.9e-42 175.6 166 62.7
Dinv09536 Davidia involucrata HOM05D004087 ORTHO05D004787 6.6e-42 174.9 211 54.0
CSS0031122 Camellia sinensis var. sinensis HOM05D004087 ORTHO05D004787 8.7e-42 174.5 208 53.4
PSO170G3120 Papaver somniferum HOM05D004087 ORTHO05D004787 1.9e-41 173.3 173 57.2
TWI59G0284 Tripterygium wilfordii HOM05D004087 ORTHO05D004787 1.9e-41 173.3 212 52.8
PSO017G3065 Papaver somniferum HOM05D004087 ORTHO05D004787 5.6e-41 171.8 173 52.6
Sc05g0005570 Simmondsia chinensis HOM05D004087 ORTHO05D004787 7.3e-41 171.4 148 68.9
Aqoxy6G02440 Aquilegia oxysepala HOM05D004087 ORTHO05D004787 9.6e-41 171.0 216 52.3
Hund06503 Selenicereus undatus HOM05D004087 ORTHO05D004787 1.3e-40 170.6 211 55.9
Hund06504 Selenicereus undatus HOM05D004087 ORTHO05D004787 4.8e-40 168.7 208 54.3
QL11p029242 Quercus lobata HOM05D004087 ORTHO05D004787 6.2e-40 168.3 213 53.5
Sabra16G0181200 Salix brachista HOM05D004087 ORTHO05D004787 6.2e-40 168.3 218 52.3
Ah.01g007120 Amaranthus hybridus HOM05D004087 ORTHO05D004787 1.1e-39 167.5 167 63.5
Manes.10G087100 Manihot esculenta HOM05D004087 ORTHO05D004787 4.0e-39 165.6 210 54.3
HanXRQChr17g0551501 Helianthus annuus HOM05D004087 ORTHO05D004787 1.2e-38 164.1 169 59.2
Cc02_g20080 Coffea canephora HOM05D004087 ORTHO05D004787 9.9e-38 161.0 161 61.5
MD05G1106700 Malus domestica HOM05D004087 ORTHO05D004787 1.3e-37 160.6 215 49.8
PGSC0003DMG400025835 Solanum tuberosum HOM05D004087 ORTHO05D004787 1.3e-37 160.6 164 57.9
Lsat_1_v5_gn_7_84781 Lactuca sativa HOM05D004087 ORTHO05D004787 1.7e-37 160.2 222 52.7
ECA236G0105 Erigeron canadensis HOM05D004087 ORTHO05D004787 4.9e-37 158.7 208 51.4
Nitab4.5_0000772g0090 Nicotiana tabacum HOM05D004087 ORTHO05D004787 8.4e-37 157.9 162 57.4
Peaxi162Scf00016g03121 Petunia axillaris HOM05D004087 ORTHO05D004787 8.4e-37 157.9 185 53.5
Sopen01g049120 Solanum pennellii HOM05D004087 ORTHO05D004787 8.4e-37 157.9 164 56.7
Solyc01g106810.4 Solanum lycopersicum HOM05D004087 ORTHO05D004787 3.2e-36 156.0 164 56.7
ATR0739G081 Amborella trichopoda HOM05D004087 ORTHO05D004787 4.2e-36 155.6 114 71.1
Migut.B00471 Erythranthe guttata HOM05D004087 ORTHO05D004787 1.6e-35 153.7 182 54.9
Oeu028917.1 Olea europaea HOM05D004087 ORTHO05D004787 2.1e-35 153.3 109 67.0
Glyma.01G241400 Glycine max HOM05D004087 ORTHO05D004787 2.7e-35 152.9 149 55.7
Phvul.002G050600 Phaseolus vulgaris HOM05D004087 ORTHO05D004787 2.7e-35 152.9 112 67.9
CDE04G2047 Ceratophyllum demersum HOM05D004087 ORTHO05D004787 2.3e-34 149.8 181 51.9
BcaC03g14363 Brassica carinata HOM05D004087 ORTHO05D004787 1.3e-32 144.1 99 89.9
Nitab4.5_0009103g0030 Nicotiana tabacum HOM05D004087 ORTHO05D004787 2.1e-32 143.3 183 50.8
CDE06G2321 Ceratophyllum demersum HOM05D001904 ORTHO05D001854 2.8e-32 142.9 103 66.0
MBI16_g37623_MAGBIO Magnolia biondii HOM05D004087 ORTHO05D004787 3.6e-32 142.5 179 51.4
BolC2t07908H Brassica oleracea HOM05D004087 ORTHO05D004787 1.4e-31 140.6 97 89.7
EL10Ac9g22175 Beta vulgaris HOM05D004087 ORTHO05D004787 2.4e-31 139.8 232 45.3
DCAR_021942 Daucus carota HOM05D004087 ORTHO05D004787 3.4e-30 136.0 226 45.6
AUR62027025 Chenopodium quinoa HOM05D003497 ORTHO05D003964 8.4e-29 131.3 99 65.7
Zm00001eb009500 Zea mays HOM05D004087 ORTHO05D004787 1.1e-28 131.0 107 58.9
Gohir.A13G047950 Gossypium hirsutum HOM05D004087 ORTHO05D004787 9.6e-25 117.9 179 45.3
MELO3C018531.2 Cucumis melo HOM05D004087 ORTHO05D004787 2.8e-24 116.3 143 57.3
SGA_v2.0_scaffold32G12983 Striga asiatica HOM05D004087 ORTHO05D004787 8.1e-24 114.8 94 54.3
MD10G1111500 Malus domestica HOM05D004087 ORTHO05D004787 1.1e-23 114.4 176 51.1
vmacro01944 Vaccinium macrocarpon HOM05D004087 ORTHO05D004787 5.3e-23 112.1 74 68.9
SalBow6G0931 Salvia bowleyana HOM05D004087 ORTHO05D004787 6.9e-23 111.7 87 59.8
C02p17780 Brassica napus HOM05D004087 ORTHO05D004787 3.4e-22 109.4 62 93.5
Haze_10292 Corylus avellana HOM05D004087 ORTHO05D004787 3.4e-22 109.4 295 35.9
Phvul.002G079300 Phaseolus vulgaris HOM05D004087 ORTHO05D004787 2.9e-21 106.3 112 51.8
Glyma.01G039100 Glycine max HOM05D004087 ORTHO05D004787 4.9e-21 105.5 113 52.2
CAN.G300.5 Capsicum annuum HOM05D004087 ORTHO05D004787 1.1e-20 104.4 89 62.9
Ciclev10032809m.g Citrus clementina HOM05D004087 ORTHO05D004787 1.1e-20 104.4 113 51.3
VMungo1215G1106 Vigna mungo HOM05D004087 ORTHO05D004787 1.1e-20 104.4 112 49.1
COL.COLO4_36242 Corchorus olitorius HOM05D004087 ORTHO05D004787 1.4e-20 104.0 112 50.9
Solyc04g005120.3 Solanum lycopersicum HOM05D004087 ORTHO05D004787 1.4e-20 104.0 89 62.9
Cpa.g.sc5.304 Carica papaya HOM05D004087 ORTHO05D004787 1.9e-20 103.6 89 57.3
Peaxi162Scf00187g00617 Petunia axillaris HOM05D004087 ORTHO05D004787 1.9e-20 103.6 89 62.9
Manes.05G094600 Manihot esculenta HOM05D004087 ORTHO05D004787 2.5e-20 103.2 112 52.7
Potri.008G190900 Populus trichocarpa HOM05D004087 ORTHO05D004787 2.5e-20 103.2 114 50.0
Nitab4.5_0000710g0070 Nicotiana tabacum HOM05D004087 ORTHO05D004787 3.2e-20 102.8 89 64.0
Sabra08G0144800 Salix brachista HOM05D004087 ORTHO05D004787 7.1e-20 101.7 111 49.5
Actinidia01168 Actinidia chinensis HOM05D004087 ORTHO05D004787 9.3e-20 101.3 124 47.6
Glyma.02G025600 Glycine max HOM05D004087 ORTHO05D004787 9.3e-20 101.3 113 54.9
Gohir.D04G136500 Gossypium hirsutum HOM05D004087 ORTHO05D004787 9.3e-20 101.3 91 59.3
Gorai.012G120300 Gossypium raimondii HOM05D004087 ORTHO05D004787 9.3e-20 101.3 91 59.3
Sopen04g001140 Solanum pennellii HOM05D004087 ORTHO05D004787 9.3e-20 101.3 181 45.9
Atru.chr11.1891 Acer truncatum HOM05D004087 ORTHO05D004787 1.6e-19 100.5 92 54.3
CiPaw.06G078300 Carya illinoinensis HOM05D004087 ORTHO05D004787 4.6e-19 99.0 105 52.4
Lj2g0011291 Lotus japonicus HOM05D004087 ORTHO05D004787 4.6e-19 99.0 108 50.9
TPR.G26706 Trifolium pratense HOM05D004087 ORTHO05D004787 4.6e-19 99.0 147 41.5
RhsimUnG0040800 Rhododendron simsii HOM05D004087 ORTHO05D004787 6.0e-19 98.6 103 51.5
arahy.Tifrunner.gnm1.ann1.F53DZL Arachis hypogaea HOM05D004087 ORTHO05D004787 1.8e-18 97.1 163 46.0
Eucgr.B02582 Eucalyptus grandis HOM05D004087 ORTHO05D004787 1.8e-18 97.1 188 41.0
Hma1.2p1_0289F.1_g114450 Hydrangea macrophylla HOM05D004087 ORTHO05D004787 1.8e-18 97.1 113 51.3
Lalb_Chr05g0217411 Lupinus albus HOM05D004087 ORTHO05D004787 2.3e-18 96.7 167 41.9
PSO591G0142 Papaver somniferum HOM05D004087 ORTHO05D004787 2.3e-18 96.7 91 54.9
GSVIVG01020122001 Vitis vinifera HOM05D004087 ORTHO05D004787 3.0e-18 96.3 91 57.1
Aqoxy3G03190 Aquilegia oxysepala HOM05D004087 ORTHO05D004787 3.9e-18 95.9 111 54.1
arahy.Tifrunner.gnm1.ann1.0DC02M Arachis hypogaea HOM05D004087 ORTHO05D004787 3.9e-18 95.9 163 46.0
MBI01_g41231_MAGBIO Magnolia biondii HOM05D004087 ORTHO05D004787 5.1e-18 95.5 112 47.3
CARHR063040 Cardamine hirsuta HOM05D004087 ORTHO05D004787 8.7e-18 94.7 91 54.9
TAR622G0570 Trochodendron aralioides HOM05D004087 ORTHO05D004787 1.1e-17 94.4 92 52.2
PSO832G0995 Papaver somniferum HOM05D004087 ORTHO05D004787 1.9e-17 93.6 91 52.7
Sp5g25060 Schrenkiella parvula HOM05D004087 ORTHO05D004787 1.9e-17 93.6 92 52.2
BcaC08g46444 Brassica carinata HOM05D004087 ORTHO05D004787 3.3e-17 92.8 189 37.6
C06p43810 Brassica napus HOM05D004087 ORTHO05D004787 3.3e-17 92.8 92 51.1
BolC6t39453H Brassica oleracea HOM05D004087 ORTHO05D004787 3.3e-17 92.8 189 37.6
Medtr5g037230 Medicago truncatula HOM05D004087 ORTHO05D004787 3.3e-17 92.8 105 44.8
PGR119G1273 Punica granatum HOM05D004087 ORTHO05D004787 3.3e-17 92.8 89 52.8
unitig_0.g632 Utricularia gibba HOM05D004087 ORTHO05D004787 3.3e-17 92.8 60 75.0
AL2G29180 Arabidopsis lyrata HOM05D004087 ORTHO05D004787 4.3e-17 92.4 92 52.2
THA.LOC104822080 Tarenaya hassleriana HOM05D004087 ORTHO05D004787 4.3e-17 92.4 185 39.5
BraA07t31211Z Brassica rapa HOM05D004087 ORTHO05D004787 5.7e-17 92.0 115 50.4
Carub.0002s1665 Capsella rubella HOM05D004087 ORTHO05D004787 5.7e-17 92.0 161 42.9
A07p36390 Brassica napus HOM05D004087 ORTHO05D004787 7.4e-17 91.7 92 51.1
Thhalv10019201m.g Eutrema salsugineum HOM05D004087 ORTHO05D004787 9.6e-17 91.3 188 42.0
AT1G69935 Arabidopsis thaliana HOM05D004087 ORTHO05D004787 1.3e-16 90.9 92 51.1
BcaB03g14773 Brassica carinata HOM05D004087 ORTHO05D004787 6.2e-16 88.6 190 40.0
Psat2g117160 Pisum sativum HOM05D004087 ORTHO05D004787 8.2e-16 88.2 105 42.9
VMungo1215G2093 Vigna mungo HOM05D004087 ORTHO05D004787 1.4e-15 87.4 183 38.8
Rhsim12G0127500 Rhododendron simsii HOM05D004087 ORTHO05D004787 5.3e-15 85.5 128 40.6
Cpa.g.sc106.30 Carica papaya HOM05D004087 ORTHO05D004787 6.9e-15 85.1 92 63.0
Dinv24938 Davidia involucrata HOM05D004087 ORTHO05D004787 2.0e-14 83.6 79 55.7
Haze_12080 Corylus avellana HOM05D004087 ORTHO05D004787 2.6e-14 83.2 89 50.6
AUR62030868 Chenopodium quinoa HOM05D004087 ORTHO05D004787 3.4e-14 82.8 91 49.5
Lj5A221T58 Lonicera japonica HOM05D004087 ORTHO05D004787 1.9e-12 77.0 148 45.9
Cfa009049 Carpinus fangiana HOM05D004087 ORTHO05D004787 2.5e-12 76.6 89 46.1
Mapoly0011s0173 Marchantia polymorpha HOM05D004087 ORTHO05D004787 1.2e-11 74.3 135 36.3
AagrBONN_evm.TU.Sc2ySwM_344.3821 Anthoceros agrestis HOM05D004087 ORTHO05D004787 1.3e-10 70.9 90 40.0
Duzib268G0252 Durio zibethinus HOM05D004087 ORTHO05D004787 3.9e-10 69.3 146 39.7
A07p42060 Brassica napus HOM05D000237 ORTHO05D017465 1.1e-09 67.8 69 58.0
Lsat_1_v5_gn_3_112521 Lactuca sativa HOM05D004087 ORTHO05D004787 1.9e-09 67.0 96 55.2
Lsat_1_v5_gn_9_118200 Lactuca sativa HOM05D004087 ORTHO05D004787 7.4e-09 65.1 93 55.9
Ca_28186_v3 Cicer arietinum L. HOM05D004087 ORTHO05D004787 8.2e-08 61.6 66 50.0
BcaC01g03610 Brassica carinata HOM05D005057 ORTHO05D019871 1.1e-07 61.2 69 53.6
Nn1g03866 Nelumbo nucifera HOM05D004087 ORTHO05D004787 1.1e-07 61.2 89 41.6
QL03p066700 Quercus lobata HOM05D004087 ORTHO05D004787 1.8e-07 60.5 55 58.2
vmacro16306 Vaccinium macrocarpon HOM05D004087 ORTHO05D004787 4.1e-07 59.3 60 51.7
Os02g0531900 Oryza sativa ssp. japonica HOM05D004087 ORTHO05D004787 5.3e-07 58.9 50 56.0
PGSC0003DMG400001914 Solanum tuberosum HOM05D000067 ORTHO05D000097 6.9e-07 58.5 51 60.8


User provided reference genes

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