Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G15540 Arabidopsis lyrata HOM05D008569 ORTHO05D010111 2.9e-130 468.8 270 100.0
AT4G35610 Arabidopsis thaliana HOM05D008569 ORTHO05D010111 1.1e-86 323.9 271 73.1
Carub.0007s0469 Capsella rubella HOM05D008569 ORTHO05D010111 6.5e-58 228.4 306 53.6
Sp7g33380 Schrenkiella parvula HOM05D008569 ORTHO05D010111 8.5e-58 228.0 271 57.9
Thhalv10026930m.g Eutrema salsugineum HOM05D008569 ORTHO05D010111 2.3e-47 193.4 281 50.2
BcaNung03648 Brassica carinata HOM05D008569 ORTHO05D010111 6.8e-47 191.8 272 55.9
BcaNung03645 Brassica carinata HOM05D008569 ORTHO05D010111 5.7e-46 188.7 275 54.2
A01p03020 Brassica napus HOM05D008569 ORTHO05D010111 1.1e-44 184.5 276 55.1
BraA01t00284Z Brassica rapa HOM05D008569 ORTHO05D010111 1.1e-44 184.5 276 55.1
C01p03370 Brassica napus HOM05D008569 ORTHO05D010111 4.7e-40 169.1 262 49.2
BolC1t00322H Brassica oleracea HOM05D008569 ORTHO05D010111 4.7e-40 169.1 262 49.2
AT4G35700 Arabidopsis thaliana HOM05D008569 ORTHO05D010111 6.4e-37 158.7 292 42.8
Thhalv10026068m.g Eutrema salsugineum HOM05D008569 ORTHO05D010111 1.4e-36 157.5 293 42.7
A01p02990 Brassica napus HOM05D008569 ORTHO05D010111 8.0e-32 141.7 298 40.6
BraA01t00282Z Brassica rapa HOM05D008569 ORTHO05D010111 8.0e-32 141.7 298 40.6
AL7G15420 Arabidopsis lyrata HOM05D008569 ORTHO05D010111 1.0e-31 141.4 306 40.5
CARHR243950 Cardamine hirsuta HOM05D008569 ORTHO05D010111 4.4e-30 136.0 205 47.3
C01p03340 Brassica napus HOM05D008569 ORTHO05D010111 2.4e-28 130.2 298 40.9
BolC1t00319H Brassica oleracea HOM05D008569 ORTHO05D010111 2.4e-28 130.2 298 40.9
Carub.0007s0458 Capsella rubella HOM05D008569 ORTHO05D010111 3.6e-24 116.3 292 36.6
THA.LOC104820185 Tarenaya hassleriana HOM05D008569 ORTHO05D010111 3.4e-22 109.8 257 36.6
THA.LOC104820184 Tarenaya hassleriana HOM05D008569 ORTHO05D010111 4.3e-17 92.8 271 40.6
Thhalv10023161m.g Eutrema salsugineum HOM05D008569 ORTHO05D010111 8.1e-16 88.6 233 38.2
MELO3C007971.2 Cucumis melo HOM05D008569 ORTHO05D010111 2.0e-14 84.0 145 39.3
CsaV3_6G047820 Cucumis sativus L. HOM05D008569 ORTHO05D010111 3.4e-14 83.2 145 38.6
arahy.Tifrunner.gnm1.ann1.62X1XK Arachis hypogaea HOM05D010736 ORTHO05D010111 1.3e-13 81.3 158 37.3
arahy.Tifrunner.gnm1.ann1.IS160S Arachis hypogaea HOM05D010736 ORTHO05D010111 1.3e-13 81.3 158 37.3
Cfa007069 Carpinus fangiana HOM05D008569 ORTHO05D010111 2.2e-13 80.5 169 35.5
ClCG01G020850 Citrullus lanatus HOM05D008569 ORTHO05D010111 4.9e-13 79.3 150 38.0
arahy.Tifrunner.gnm1.ann1.JYQV5P Arachis hypogaea HOM05D010736 ORTHO05D010111 1.9e-12 77.4 55 54.5
arahy.Tifrunner.gnm1.ann1.KB9TDA Arachis hypogaea HOM05D010736 ORTHO05D010111 1.9e-12 77.4 55 54.5
Haze_03671 Corylus avellana HOM05D008569 ORTHO05D010111 2.4e-12 77.0 169 36.1
Medtr5g023910 Medicago truncatula HOM05D010736 ORTHO05D010111 1.6e-11 74.3 153 34.0
Sed0010976 Sechium edule HOM05D008569 ORTHO05D010111 2.1e-11 73.9 157 35.7
Ca_24971_v3 Cicer arietinum L. HOM05D010736 ORTHO05D010111 6.0e-11 72.4 53 49.1
Psat2g149320 Pisum sativum HOM05D010736 ORTHO05D010111 1.3e-10 71.2 167 37.1
Sabra05G0082900 Salix brachista HOM05D008569 ORTHO05D010111 1.3e-10 71.2 161 34.8
CsaV3_3G000220 Cucumis sativus L. HOM05D008569 ORTHO05D010111 2.3e-10 70.5 146 32.9
Ca_24970_v3 Cicer arietinum L. HOM05D010736 ORTHO05D010111 3.0e-10 70.1 62 46.8
MELO3C013717.2 Cucumis melo HOM05D008569 ORTHO05D010111 3.9e-10 69.7 146 31.5
Sed0003917 Sechium edule HOM05D008569 ORTHO05D010111 3.9e-10 69.7 135 35.6
TPR.G8399 Trifolium pratense HOM05D013440 ORTHO05D013937 3.9e-10 69.7 55 50.9
QL06p053745 Quercus lobata HOM05D008569 ORTHO05D010111 5.1e-10 69.3 59 52.5
ClCG10G000200 Citrullus lanatus HOM05D008569 ORTHO05D010111 8.6e-10 68.6 123 36.6
QL06p052831 Quercus lobata HOM05D008569 ORTHO05D010111 1.5e-09 67.8 52 53.8
TPR.G8374 Trifolium pratense HOM05D010736 ORTHO05D010111 1.5e-09 67.8 55 49.1
Lj2g0020887 Lotus japonicus HOM05D010736 ORTHO05D010111 1.9e-09 67.4 146 34.2
Phvul.002G115500 Phaseolus vulgaris HOM05D010736 ORTHO05D010111 1.9e-09 67.4 149 32.2
VMungo1215G0851 Vigna mungo HOM05D010736 ORTHO05D010111 1.9e-09 67.4 160 32.5
CiPaw.07G003700 Carya illinoinensis HOM05D008569 ORTHO05D010111 2.5e-09 67.0 174 32.8
Psat0s1262g0120 Pisum sativum HOM05D010736 ORTHO05D010111 2.5e-09 67.0 159 35.8
Manes.02G113100 Manihot esculenta HOM05D008569 ORTHO05D010111 4.3e-09 66.2 116 35.3
ClCG02G009940 Citrullus lanatus HOM05D000174 ORTHO05D001526 1.2e-08 64.7 141 33.3
Potri.005G100300 Populus trichocarpa HOM05D008569 ORTHO05D010111 1.6e-08 64.3 158 33.5
Prupe.7G181100 Prunus persica HOM05D008569 ORTHO05D010111 1.6e-08 64.3 61 49.2
FvH4_2g16630 Fragaria vesca HOM05D000174 ORTHO05D001526 2.1e-08 63.9 74 41.9
FAN24G2331 Fragaria x ananassa HOM05D000174 ORTHO05D001526 2.1e-08 63.9 74 41.9
FAN27G0184 Fragaria x ananassa HOM05D000174 ORTHO05D001526 2.1e-08 63.9 74 41.9
RcHm_v2.0_Chr6g0280711 Rosa chinensis HOM05D000174 ORTHO05D001526 2.1e-08 63.9 62 46.8
Psat0s1262g0240 Pisum sativum HOM05D010736 ORTHO05D010111 2.8e-08 63.5 143 31.5
Rhsim05G0047500 Rhododendron simsii HOM05D000174 ORTHO05D001526 2.8e-08 63.5 60 46.7
RhsimUnG0141900 Rhododendron simsii HOM05D000174 ORTHO05D001526 2.8e-08 63.5 60 46.7
FAN15G2497 Fragaria x ananassa HOM05D000174 ORTHO05D001526 3.6e-08 63.2 74 40.5
Glyma.11G084900 Glycine max HOM05D010736 ORTHO05D010111 4.7e-08 62.8 144 30.6
Gorai.001G198600 Gossypium raimondii HOM05D019103 ORTHO05D010111 1.1e-07 61.6 52 50.0
Hma1.2p1_0032F.1_g018820 Hydrangea macrophylla HOM05D000174 ORTHO05D001526 1.4e-07 61.2 56 48.2
vmacro17301 Vaccinium macrocarpon HOM05D000174 ORTHO05D001526 1.4e-07 61.2 55 47.3
CSS0027823 Camellia sinensis var. sinensis HOM05D000174 ORTHO05D001526 1.8e-07 60.8 55 47.3
FAN20G1232 Fragaria x ananassa HOM05D000174 ORTHO05D001526 1.8e-07 60.8 64 43.8
Cc10_g04030 Coffea canephora HOM05D000174 ORTHO05D001526 2.4e-07 60.5 61 45.9
Zm00001eb033660 Zea mays HOM05D000174 ORTHO05D001526 2.4e-07 60.5 70 40.0
Actinidia20568 Actinidia chinensis HOM05D000174 ORTHO05D001526 3.1e-07 60.1 79 39.2
Gohir.A07G170878 Gossypium hirsutum HOM05D019103 ORTHO05D010111 3.1e-07 60.1 42 54.8
Gohir.D07G177633 Gossypium hirsutum HOM05D019103 ORTHO05D010111 3.1e-07 60.1 42 54.8
Hma1.2p1_0032F.1_g018690 Hydrangea macrophylla HOM05D000174 ORTHO05D001526 4.0e-07 59.7 55 47.3
AL7G15890 Arabidopsis lyrata HOM05D000174 ORTHO05D001526 5.2e-07 59.3 59 45.8
Atru.chr3.964 Acer truncatum HOM05D008569 ORTHO05D010111 6.8e-07 58.9 77 45.5
Aqoxy6G01686 Aquilegia oxysepala HOM05D000174 ORTHO05D001526 6.8e-07 58.9 60 43.3
Duzib147G0625 Durio zibethinus HOM05D019103 ORTHO05D010111 6.8e-07 58.9 60 46.7
Rhsim11G0197100 Rhododendron simsii HOM05D000174 ORTHO05D001526 6.8e-07 58.9 71 40.8
AT4G35280 Arabidopsis thaliana HOM05D000174 ORTHO05D001526 8.9e-07 58.5 56 46.4
Dinv41879 Davidia involucrata HOM05D000174 ORTHO05D001526 8.9e-07 58.5 53 47.2
Thecc.02G044700 Theobroma cacao HOM05D000174 ORTHO05D001526 8.9e-07 58.5 54 46.3
Duzib264G0559 Durio zibethinus HOM05D019103 ORTHO05D010111 1.2e-06 58.2 62 46.8
Oeu015527.1 Olea europaea HOM05D000174 ORTHO05D001526 1.2e-06 58.2 54 46.3
Oeu015529.1 Olea europaea HOM05D000174 ORTHO05D001526 1.2e-06 58.2 54 46.3
HPP92_020708 Vanilla planifolia HOM05D000174 ORTHO05D001526 1.2e-06 58.2 37 59.5
GSVIVG01023887001 Vitis vinifera HOM05D000174 ORTHO05D001526 1.2e-06 58.2 56 44.6
CARHR243600 Cardamine hirsuta HOM05D000174 ORTHO05D001526 1.5e-06 57.8 56 46.4
Ciclev10030233m.g Citrus clementina HOM05D000174 ORTHO05D001526 1.5e-06 57.8 58 44.8
Duzib248G0614 Durio zibethinus HOM05D000174 ORTHO05D001526 1.5e-06 57.8 74 37.8
Eucgr.I01518 Eucalyptus grandis HOM05D000174 ORTHO05D001526 1.5e-06 57.8 77 37.7
Gohir.A03G209700 Gossypium hirsutum HOM05D000174 ORTHO05D001526 1.5e-06 57.8 53 45.3
Carub.0003s3112 Capsella rubella HOM05D000174 ORTHO05D001526 2.0e-06 57.4 61 42.6
Gohir.D02G231400 Gossypium hirsutum HOM05D000174 ORTHO05D001526 2.0e-06 57.4 53 45.3
Gorai.005G259000 Gossypium raimondii HOM05D000174 ORTHO05D001526 2.0e-06 57.4 53 45.3
Nn6g31718 Nelumbo nucifera HOM05D000174 ORTHO05D001526 2.0e-06 57.4 54 44.4
Oeu048888.1 Olea europaea HOM05D008569 ORTHO05D026372 2.0e-06 57.4 130 30.8
Aa31LG2G14820 Aethionema arabicum HOM05D000174 ORTHO05D001526 2.6e-06 57.0 54 44.4
Lj9P406T21 Lonicera japonica HOM05D000174 ORTHO05D001526 2.6e-06 57.0 53 47.2
MBI08_g12710_MAGBIO Magnolia biondii HOM05D000174 ORTHO05D001526 2.6e-06 57.0 54 44.4
Oeu031633.1 Olea europaea HOM05D008569 ORTHO05D010111 2.6e-06 57.0 117 35.9
Potri.004G205300 Populus trichocarpa HOM05D000174 ORTHO05D001526 2.6e-06 57.0 54 44.4
Sabra15G0041100 Salix brachista HOM05D000174 ORTHO05D001526 2.6e-06 57.0 56 42.9
Zm00001eb199290 Zea mays HOM05D000174 ORTHO05D001526 2.6e-06 57.0 71 42.3
Ah.01g023730 Amaranthus hybridus HOM05D000174 ORTHO05D001526 3.4e-06 56.6 54 44.4
CARHR293490 Cardamine hirsuta HOM05D000174 ORTHO05D001526 3.4e-06 56.6 57 47.4
Cpa.g.sc20.205 Carica papaya HOM05D000174 ORTHO05D001526 3.4e-06 56.6 54 44.4
Migut.H02203 Erythranthe guttata HOM05D008569 ORTHO05D010111 3.4e-06 56.6 59 45.8
Gohir.A01G175000 Gossypium hirsutum HOM05D000174 ORTHO05D001526 3.4e-06 56.6 54 44.4
Gohir.D01G166100 Gossypium hirsutum HOM05D000174 ORTHO05D001526 3.4e-06 56.6 54 44.4
Gorai.002G206600 Gossypium raimondii HOM05D000174 ORTHO05D001526 3.4e-06 56.6 54 44.4
Sed0014639 Sechium edule HOM05D000174 ORTHO05D001526 3.4e-06 56.6 52 46.2
THA.LOC104819687 Tarenaya hassleriana HOM05D000174 ORTHO05D001526 3.4e-06 56.6 54 44.4
EL10Ac9g21244 Beta vulgaris HOM05D000174 ORTHO05D001526 4.4e-06 56.2 36 58.3
HanXRQChr12g0374431 Helianthus annuus HOM05D000174 ORTHO05D001526 4.4e-06 56.2 52 46.2
Oeu051846.1 Olea europaea HOM05D001927 ORTHO05D001972 4.4e-06 56.2 52 46.2
PGR042G3277 Punica granatum HOM05D000174 ORTHO05D001526 4.4e-06 56.2 57 42.1
TWI75G1586 Tripterygium wilfordii HOM05D000174 ORTHO05D001526 4.4e-06 56.2 72 40.3
Duzib052G0399 Durio zibethinus HOM05D000174 ORTHO05D001526 5.8e-06 55.8 54 44.4
Duzib132G0848 Durio zibethinus HOM05D000174 ORTHO05D001526 5.8e-06 55.8 54 42.6
Lj5P172T80 Lonicera japonica HOM05D000174 ORTHO05D001526 5.8e-06 55.8 52 46.2
Lalb_Chr22g0352391 Lupinus albus HOM05D000174 ORTHO05D001526 5.8e-06 55.8 55 47.3
Lalb_Chr22g0352401 Lupinus albus HOM05D000174 ORTHO05D001526 5.8e-06 55.8 55 47.3
MD03G1043000 Malus domestica HOM05D000174 ORTHO05D000630 5.8e-06 55.8 36 55.6
Psat2g001240 Pisum sativum HOM05D000174 ORTHO05D001526 5.8e-06 55.8 38 55.3
Psat2g023640 Pisum sativum HOM05D000174 ORTHO05D001526 5.8e-06 55.8 38 55.3
Potri.009G166200 Populus trichocarpa HOM05D000174 ORTHO05D001526 5.8e-06 55.8 53 43.4
PGR102G2978 Punica granatum HOM05D008569 ORTHO05D010111 5.8e-06 55.8 157 32.5
Sabra04G0138600 Salix brachista HOM05D000174 ORTHO05D001526 5.8e-06 55.8 52 46.2
Sp7g33060 Schrenkiella parvula HOM05D000174 ORTHO05D001526 5.8e-06 55.8 52 46.2
Sc08g0002310 Simmondsia chinensis HOM05D000174 ORTHO05D001526 5.8e-06 55.8 52 46.2
Thecc.01G006600 Theobroma cacao HOM05D019103 ORTHO05D010111 5.8e-06 55.8 60 43.3
BolC1t00353H Brassica oleracea HOM05D000174 ORTHO05D001526 7.6e-06 55.5 58 44.8
CiPaw.05G091800 Carya illinoinensis HOM05D000174 ORTHO05D001526 7.6e-06 55.5 57 43.9
AUR62033207 Chenopodium quinoa HOM05D000174 ORTHO05D001526 7.6e-06 55.5 50 48.0
AUR62033209 Chenopodium quinoa HOM05D000174 ORTHO05D001526 7.6e-06 55.5 50 48.0
COL.COLO4_17932 Corchorus olitorius HOM05D000174 ORTHO05D001526 7.6e-06 55.5 57 42.1
Glyma.02G311100 Glycine max HOM05D000174 ORTHO05D001526 7.6e-06 55.5 56 46.4
MD10G1139600 Malus domestica HOM05D000174 ORTHO05D001526 7.6e-06 55.5 52 46.2
QL11p055621 Quercus lobata HOM05D000174 ORTHO05D001526 7.6e-06 55.5 63 44.4
QL11p055917 Quercus lobata HOM05D000174 ORTHO05D001526 7.6e-06 55.5 63 44.4
A01p03280 Brassica napus HOM05D000174 ORTHO05D001526 9.9e-06 55.1 116 29.3
BraA01t00313Z Brassica rapa HOM05D000174 ORTHO05D001526 9.9e-06 55.1 116 29.3
CAN.G62.50 Capsicum annuum HOM05D000174 ORTHO05D001526 9.9e-06 55.1 61 44.3
ECA246G3372 Erigeron canadensis HOM05D000174 ORTHO05D001526 9.9e-06 55.1 52 46.2
HanXRQChr17g0543991 Helianthus annuus HOM05D000174 ORTHO05D001526 9.9e-06 55.1 52 46.2
Lsat_1_v5_gn_3_48800 Lactuca sativa HOM05D000174 ORTHO05D001526 9.9e-06 55.1 52 46.2
PSO478G0578 Papaver somniferum HOM05D000174 ORTHO05D001526 9.9e-06 55.1 53 45.3
TWI31G0140 Tripterygium wilfordii HOM05D000174 ORTHO05D001526 9.9e-06 55.1 54 44.4
unitig_736.g22730 Utricularia gibba HOM05D008569 ORTHO05D001526 9.9e-06 55.1 60 41.7


User provided reference genes

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