Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G15220 Arabidopsis lyrata HOM05D005949 ORTHO05D006945 2.9e-220 768.5 445 100.0
AT4G35850 Arabidopsis thaliana HOM05D005949 ORTHO05D006945 2.8e-215 751.9 445 97.1
Carub.0007s0438 Capsella rubella HOM05D005949 ORTHO05D006945 7.1e-211 737.3 445 96.0
CARHR244220 Cardamine hirsuta HOM05D005949 ORTHO05D006945 9.0e-206 720.3 443 94.1
Thhalv10025194m.g Eutrema salsugineum HOM05D005949 ORTHO05D006945 2.2e-196 689.1 449 89.8
BolC1t00304H Brassica oleracea HOM05D005949 ORTHO05D006945 6.1e-194 681.0 446 88.1
C01p03190 Brassica napus HOM05D005949 ORTHO05D006945 3.0e-193 678.7 447 87.7
BraA01t00268Z Brassica rapa HOM05D005949 ORTHO05D006945 2.5e-192 675.6 446 87.0
BcaNung04881 Brassica carinata HOM05D005949 ORTHO05D006945 1.8e-190 669.5 447 88.1
A01p02870 Brassica napus HOM05D005949 ORTHO05D006945 7.7e-189 664.1 438 87.2
BcaNung00787 Brassica carinata HOM05D005949 ORTHO05D006945 3.7e-183 645.2 443 74.9
Aa31LG6G12800 Aethionema arabicum HOM05D005949 ORTHO05D006945 1.1e-176 623.6 445 82.2
THA.LOC104819734 Tarenaya hassleriana HOM05D005949 ORTHO05D006945 1.8e-158 563.1 445 74.8
Manes.17G110300 Manihot esculenta HOM05D005949 ORTHO05D006945 1.4e-145 520.4 439 59.9
TAR374G0398 Trochodendron aralioides HOM05D005949 ORTHO05D006945 1.4e-142 510.4 438 59.4
MSTRG.15541 Avicennia marina HOM05D005949 ORTHO05D006945 2.0e-141 506.5 436 58.5
ClCG10G013730 Citrullus lanatus HOM05D005949 ORTHO05D006945 1.1e-139 500.7 436 67.4
RhsimUnG0006400 Rhododendron simsii HOM05D005949 ORTHO05D006945 7.3e-139 498.0 441 58.5
RhsimUnG0087200 Rhododendron simsii HOM05D005949 ORTHO05D006945 7.3e-139 498.0 441 58.5
Nitab4.5_0001562g0070 Nicotiana tabacum HOM05D005949 ORTHO05D006945 3.6e-138 495.7 436 57.1
Nitab4.5_0006683g0100 Nicotiana tabacum HOM05D005949 ORTHO05D006945 8.9e-137 491.1 437 57.0
Ciclev10015245m.g Citrus clementina HOM05D005949 ORTHO05D006945 2.6e-136 489.6 433 58.2
CSS0029670 Camellia sinensis var. sinensis HOM05D005949 ORTHO05D006945 1.7e-135 486.9 433 57.5
Duzib264G1167 Durio zibethinus HOM05D005949 ORTHO05D006945 2.9e-135 486.1 441 56.0
Sed0011104 Sechium edule HOM05D005949 ORTHO05D006945 2.9e-135 486.1 436 65.8
Aqoxy5G03678 Aquilegia oxysepala HOM05D005949 ORTHO05D006945 3.2e-134 482.6 439 55.1
CAN.G1235.24 Capsicum annuum HOM05D005949 ORTHO05D006945 1.2e-133 480.7 439 55.4
HanXRQChr15g0486811 Helianthus annuus HOM05D005949 ORTHO05D006945 6.0e-133 478.4 439 56.0
Nn2g12389 Nelumbo nucifera HOM05D005949 ORTHO05D006945 7.8e-133 478.0 438 61.9
GSVIVG01032367001 Vitis vinifera HOM05D005949 ORTHO05D006945 1.3e-132 477.2 444 59.9
PGSC0003DMG400018653 Solanum tuberosum HOM05D005949 ORTHO05D006945 3.9e-132 475.7 435 54.9
CiPaw.03G046600 Carya illinoinensis HOM05D005949 ORTHO05D006945 1.1e-131 474.2 444 64.4
Migut.K01417 Erythranthe guttata HOM05D005949 ORTHO05D006945 3.3e-131 472.6 437 62.9
Thhalv10023015m.g Eutrema salsugineum HOM05D005949 ORTHO05D006945 5.6e-131 471.9 438 66.2
Sopen01g054070 Solanum pennellii HOM05D005949 ORTHO05D006945 9.5e-131 471.1 435 54.3
SGA_v2.0_scaffold47G17523 Striga asiatica HOM05D005949 ORTHO05D006945 9.5e-131 471.1 445 55.1
QL02p073821 Quercus lobata HOM05D005949 ORTHO05D006945 1.6e-130 470.3 444 58.3
Solyc01g112020.3 Solanum lycopersicum HOM05D005949 ORTHO05D006945 3.6e-130 469.2 435 54.3
Haze_14768 Corylus avellana HOM05D005949 ORTHO05D006945 4.7e-130 468.8 451 57.6
Lsat_1_v5_gn_4_184520 Lactuca sativa HOM05D005949 ORTHO05D006945 4.7e-130 468.8 433 55.0
Cfa007328 Carpinus fangiana HOM05D005949 ORTHO05D006945 1.2e-128 464.2 440 58.2
COL.COLO4_29188 Corchorus olitorius HOM05D005949 ORTHO05D006945 1.9e-126 456.8 443 57.3
ECA232G4961 Erigeron canadensis HOM05D005949 ORTHO05D006945 2.1e-125 453.4 450 51.8
Gohir.D10G085800 Gossypium hirsutum HOM05D005949 ORTHO05D006945 7.8e-125 451.4 438 57.8
Lalb_Chr06g0174481 Lupinus albus HOM05D005949 ORTHO05D006945 3.0e-124 449.5 446 61.7
MD17G1021300 Malus domestica HOM05D005949 ORTHO05D006945 5.1e-124 448.7 436 62.8
MD09G1021300 Malus domestica HOM05D005949 ORTHO05D006945 8.6e-124 448.0 438 61.9
Gorai.011G094000 Gossypium raimondii HOM05D005949 ORTHO05D006945 1.9e-123 446.8 439 57.6
CANSAT64G2213 Cannabis sativa HOM05D005949 ORTHO05D006945 4.3e-123 445.7 442 56.1
Lj7C602T3 Lonicera japonica HOM05D005949 ORTHO05D006945 7.3e-123 444.9 458 51.7
Glyma.05G115200 Glycine max HOM05D005949 ORTHO05D006945 1.2e-122 444.1 448 55.8
Eucgr.J02262 Eucalyptus grandis HOM05D005949 ORTHO05D006945 4.0e-121 439.1 443 54.4
FAN09G2334 Fragaria x ananassa HOM05D005949 ORTHO05D006945 4.0e-121 439.1 441 52.4
Prupe.3G295200 Prunus persica HOM05D005949 ORTHO05D006945 8.9e-121 438.0 436 61.9
Gohir.A10G101600 Gossypium hirsutum HOM05D005949 ORTHO05D006945 1.2e-120 437.6 439 56.7
RcHm_v2.0_Chr2g0173461 Rosa chinensis HOM05D005949 ORTHO05D006945 1.5e-120 437.2 449 62.1
Thecc.04G021200 Theobroma cacao HOM05D005949 ORTHO05D006945 1.5e-120 437.2 444 54.5
Cc09_g05780 Coffea canephora HOM05D005949 ORTHO05D006945 3.4e-120 436.0 440 62.0
Glyma.19G052100 Glycine max HOM05D005949 ORTHO05D006945 3.4e-120 436.0 448 56.0
PSO063G1157 Papaver somniferum HOM05D005949 ORTHO05D006945 2.9e-119 433.0 445 52.4
Peaxi162Scf00420g00016 Petunia axillaris HOM05D005949 ORTHO05D006945 7.1e-118 428.3 438 52.3
PSO754G0010 Papaver somniferum HOM05D005949 ORTHO05D006945 1.6e-117 427.2 445 52.1
EL10Ac6g14123 Beta vulgaris HOM05D005949 ORTHO05D006945 3.9e-116 422.5 490 47.6
Ca_04380_v3 Cicer arietinum L. HOM05D005949 ORTHO05D006945 3.9e-116 422.5 442 52.9
Phvul.004G060400 Phaseolus vulgaris HOM05D005949 ORTHO05D006945 5.1e-116 422.2 447 52.3
arahy.Tifrunner.gnm1.ann1.4A4JE9 Arachis hypogaea HOM05D005949 ORTHO05D006945 2.5e-115 419.9 435 57.9
FAN05G2654 Fragaria x ananassa HOM05D005949 ORTHO05D006945 2.5e-115 419.9 436 61.5
VMungo0464G1442 Vigna mungo HOM05D005949 ORTHO05D006945 4.3e-115 419.1 421 58.4
TWI12G1469 Tripterygium wilfordii HOM05D005949 ORTHO05D006945 9.6e-115 417.9 437 55.8
Ah.02g128260 Amaranthus hybridus HOM05D005949 ORTHO05D006945 2.8e-114 416.4 442 48.4
TPR.G16864 Trifolium pratense HOM05D005949 ORTHO05D006945 4.8e-114 415.6 440 53.2
PGR083G1217 Punica granatum HOM05D005949 ORTHO05D006945 3.1e-113 412.9 446 52.7
FvH4_6g51990 Fragaria vesca HOM05D005949 ORTHO05D006945 4.0e-113 412.5 437 60.4
Lj2g0004695 Lotus japonicus HOM05D005949 ORTHO05D006945 6.9e-113 411.8 444 57.9
FAN14G1023 Fragaria x ananassa HOM05D005949 ORTHO05D006945 7.6e-112 408.3 436 60.3
TPR.G8694 Trifolium pratense HOM05D005949 ORTHO05D006945 7.6e-112 408.3 436 52.8
arahy.Tifrunner.gnm1.ann1.BK7H4N Arachis hypogaea HOM05D005949 ORTHO05D006945 1.3e-111 407.5 454 55.5
ATR0199G040 Amborella trichopoda HOM05D005949 ORTHO05D006945 4.9e-111 405.6 427 51.8
Medtr6g021740 Medicago truncatula HOM05D005949 ORTHO05D006945 1.4e-110 404.1 440 50.7
Sabra16G0221400 Salix brachista HOM05D005949 ORTHO05D006945 1.4e-110 404.1 429 60.6
Potri.001G341400 Populus trichocarpa HOM05D005949 ORTHO05D006945 1.9e-110 403.7 440 59.5
FAN02G3213 Fragaria x ananassa HOM05D005949 ORTHO05D006945 4.2e-110 402.5 436 59.4
CsaV3_3G042930 Cucumis sativus L. HOM05D000631 ORTHO05D000524 2.1e-109 400.2 383 65.0
HPP92_016937 Vanilla planifolia HOM05D005949 ORTHO05D006945 1.1e-107 394.4 435 49.2
SEGI_30195 Sequoiadendron giganteum HOM05D005949 ORTHO05D006945 1.3e-106 391.0 397 62.0
AUR62043287 Chenopodium quinoa HOM05D005949 ORTHO05D006945 8.1e-106 388.3 410 49.5
MELO3C026595.2 Cucumis melo HOM05D005949 ORTHO05D006945 2.6e-104 383.3 373 62.5
Os05g0145600 Oryza sativa ssp. japonica HOM05D005949 ORTHO05D006945 9.3e-102 374.8 430 56.3
unitig_88.g27782 Utricularia gibba HOM05D005949 ORTHO05D006945 2.1e-101 373.6 295 61.0
Atru.chr6.2442 Acer truncatum HOM05D005949 ORTHO05D006945 7.9e-101 371.7 277 65.3
DCAR_021740 Daucus carota HOM05D005949 ORTHO05D006945 5.3e-97 359.0 440 46.1
Zm00001eb354320 Zea mays HOM05D005949 ORTHO05D006945 6.9e-97 358.6 443 54.4
Psat5g064960 Pisum sativum HOM05D005949 ORTHO05D006945 1.7e-95 354.0 285 59.3
Dinv25719 Davidia involucrata HOM05D005949 ORTHO05D006945 1.9e-94 350.5 327 60.6
AUR62028447 Chenopodium quinoa HOM05D005949 ORTHO05D006945 4.2e-94 349.4 351 49.9
Sc09g0007150 Simmondsia chinensis HOM05D005949 ORTHO05D006945 6.0e-93 345.5 367 52.6
Actinidia36133 Actinidia chinensis HOM05D005949 ORTHO05D006945 2.7e-85 320.1 303 71.9
vmacro05885 Vaccinium macrocarpon HOM05D005949 ORTHO05D006945 1.5e-83 314.3 315 54.0
SHI03792 Sapria himalayana HOM05D005949 ORTHO05D006945 7.4e-83 312.0 248 60.1
AL7G15200 Arabidopsis lyrata HOM05D005949 ORTHO05D006945 1.4e-81 307.8 217 74.2
CSS0002019 Camellia sinensis var. sinensis HOM05D005949 ORTHO05D006945 4.6e-77 292.7 280 53.2
Cpa.g.sc130.71 Carica papaya HOM05D005949 ORTHO05D006945 7.2e-70 268.9 273 60.8
Duzib147G0933 Durio zibethinus HOM05D005949 ORTHO05D006945 4.4e-67 259.6 325 43.1
CDE04G3569 Ceratophyllum demersum HOM05D005949 ORTHO05D006945 1.5e-59 234.6 330 44.2
SMO201G0168 Selaginella moellendorffii HOM05D005949 ORTHO05D006945 1.7e-55 221.1 396 43.9
Pp3c1_21850 Physcomitrium patens HOM05D005949 ORTHO05D006945 6.8e-52 209.1 392 42.6
Mapoly0062s0069 Marchantia polymorpha HOM05D005949 ORTHO05D006945 5.4e-49 199.5 408 33.6
Pp3c14_7210 Physcomitrium patens HOM05D005949 ORTHO05D006945 7.0e-49 199.1 392 42.1
CSS0020931 Camellia sinensis var. sinensis HOM05D005949 ORTHO05D006945 3.2e-46 190.3 159 57.2
Sp7g33630 Schrenkiella parvula HOM05D005949 ORTHO05D006945 4.0e-44 183.3 111 82.9
CBR_g20407 Chara braunii HOM05D005949 ORTHO05D006945 6.3e-42 176.0 419 37.9
CBR_g20410 Chara braunii HOM05D005949 ORTHO05D006945 4.1e-41 173.3 399 38.3
Psat1g081720 Pisum sativum HOM05D005949 ORTHO05D006945 2.3e-39 167.5 282 37.2
AagrBONN_evm.TU.Sc2ySwM_117.2156 Anthoceros agrestis HOM05D005949 ORTHO05D006945 8.6e-39 165.6 406 36.9
Sc07g0004380 Simmondsia chinensis HOM05D005949 ORTHO05D006945 1.2e-35 155.2 146 55.5
Psat1g081680 Pisum sativum HOM05D005949 ORTHO05D006945 3.7e-34 150.2 100 69.0
Actinidia36134 Actinidia chinensis HOM05D005949 ORTHO05D006945 4.9e-34 149.8 113 61.1
MD09G1021100 Malus domestica HOM05D005949 ORTHO05D006945 6.3e-34 149.4 113 61.9
MBI10_g15883_MAGBIO Magnolia biondii HOM05D005949 ORTHO05D006945 1.6e-32 144.8 127 58.3
MBI10_g37260_MAGBIO Magnolia biondii HOM05D005949 ORTHO05D006945 4.3e-30 136.7 215 46.5
CAN.G479.6 Capsicum annuum HOM05D005949 ORTHO05D006945 7.3e-30 136.0 214 37.9
Hma1.2p1_0818F.1_g223360 Hydrangea macrophylla HOM05D005949 ORTHO05D006945 1.0e-28 132.1 100 61.0
CAN.G370.99 Capsicum annuum HOM05D000140 ORTHO05D000087 4.1e-25 120.2 109 53.2
SHI03793 Sapria himalayana HOM05D005949 ORTHO05D006945 7.8e-24 115.9 72 73.6
Zm00001eb120940 Zea mays HOM05D005949 ORTHO05D006945 1.0e-23 115.5 131 46.6
CAN.G1258.5 Capsicum annuum HOM05D005949 ORTHO05D006945 4.3e-22 110.2 80 62.5
Actinidia05972 Actinidia chinensis HOM05D005088 ORTHO05D006914 3.4e-19 100.5 196 33.7
Cpa.g.sc130.69 Carica papaya HOM05D005949 ORTHO05D006945 1.1e-14 85.5 57 68.4
CAN.G15.16 Capsicum annuum HOM05D005949 ORTHO05D006945 3.6e-13 80.5 55 63.6
CDE04G3731 Ceratophyllum demersum HOM05D005949 ORTHO05D006945 1.2e-11 75.5 60 58.3
Sc07g0004370 Simmondsia chinensis HOM05D005949 ORTHO05D006945 4.4e-11 73.6 66 56.1
CAN.G153.13 Capsicum annuum HOM05D001265 ORTHO05D006945 7.1e-09 66.2 41 73.2
MBI07_g20478_MAGBIO Magnolia biondii HOM05D000141 ORTHO05D001968 3.0e-07 60.8 50 54.0
CAN.G2149.1 Capsicum annuum HOM05D001265 ORTHO05D006945 6.6e-07 59.7 53 52.8
CAN.G1258.4 Capsicum annuum HOM05D005949 ORTHO05D006945 1.1e-06 58.9 38 68.4
CAN.G898.5 Capsicum annuum HOM05D005949 ORTHO05D006945 5.6e-06 56.6 38 65.8
CAN.G1086.1 Capsicum annuum HOM05D005949 ORTHO05D006945 9.6e-06 55.8 40 62.5


User provided reference genes

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