Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G15200 Arabidopsis lyrata HOM05D005949 ORTHO05D006945 9.7e-115 416.8 202 100.0
AL7G15220 Arabidopsis lyrata HOM05D005949 ORTHO05D006945 4.8e-82 308.1 217 74.2
AT4G35850 Arabidopsis thaliana HOM05D005949 ORTHO05D006945 2.0e-80 302.8 217 72.4
CARHR244220 Cardamine hirsuta HOM05D005949 ORTHO05D006945 2.8e-77 292.4 217 69.6
Carub.0007s0438 Capsella rubella HOM05D005949 ORTHO05D006945 2.3e-76 289.3 217 69.6
BolC1t00304H Brassica oleracea HOM05D005949 ORTHO05D006945 1.0e-68 263.8 217 63.1
BcaNung00787 Brassica carinata HOM05D005949 ORTHO05D006945 2.3e-68 262.7 217 62.7
C01p03190 Brassica napus HOM05D005949 ORTHO05D006945 2.3e-68 262.7 217 62.7
A01p02870 Brassica napus HOM05D005949 ORTHO05D006945 4.0e-68 261.9 217 62.2
BraA01t00268Z Brassica rapa HOM05D005949 ORTHO05D006945 5.2e-68 261.5 217 62.2
Thhalv10025194m.g Eutrema salsugineum HOM05D005949 ORTHO05D006945 8.9e-68 260.8 217 62.7
BcaNung04881 Brassica carinata HOM05D005949 ORTHO05D006945 1.5e-67 260.0 217 62.7
Aa31LG6G12800 Aethionema arabicum HOM05D005949 ORTHO05D006945 3.6e-61 238.8 217 58.1
THA.LOC104819734 Tarenaya hassleriana HOM05D005949 ORTHO05D006945 3.4e-59 232.3 217 53.9
Manes.17G110300 Manihot esculenta HOM05D005949 ORTHO05D006945 1.5e-54 216.9 218 50.9
Eucgr.J02262 Eucalyptus grandis HOM05D005949 ORTHO05D006945 3.3e-54 215.7 218 49.1
MSTRG.15541 Avicennia marina HOM05D005949 ORTHO05D006945 7.3e-54 214.5 220 50.0
QL02p073821 Quercus lobata HOM05D005949 ORTHO05D006945 1.1e-52 210.7 218 50.0
MD09G1021300 Malus domestica HOM05D005949 ORTHO05D006945 4.0e-52 208.8 217 48.4
MD17G1021300 Malus domestica HOM05D005949 ORTHO05D006945 6.8e-52 208.0 217 48.4
GSVIVG01032367001 Vitis vinifera HOM05D005949 ORTHO05D006945 6.8e-52 208.0 219 49.3
CANSAT64G2213 Cannabis sativa HOM05D005949 ORTHO05D006945 8.9e-52 207.6 230 47.0
Sed0011104 Sechium edule HOM05D005949 ORTHO05D006945 8.9e-52 207.6 238 44.5
Ciclev10015245m.g Citrus clementina HOM05D005949 ORTHO05D006945 1.2e-51 207.2 218 48.2
Atru.chr6.2442 Acer truncatum HOM05D005949 ORTHO05D006945 2.6e-51 206.1 220 49.5
CiPaw.03G046600 Carya illinoinensis HOM05D005949 ORTHO05D006945 3.4e-51 205.7 218 47.7
Prupe.3G295200 Prunus persica HOM05D005949 ORTHO05D006945 3.4e-51 205.7 217 48.4
Thecc.04G021200 Theobroma cacao HOM05D005949 ORTHO05D006945 5.8e-51 204.9 217 47.5
TAR374G0398 Trochodendron aralioides HOM05D005949 ORTHO05D006945 2.2e-50 203.0 217 48.4
Migut.K01417 Erythranthe guttata HOM05D005949 ORTHO05D006945 2.9e-50 202.6 220 46.8
Cc09_g05780 Coffea canephora HOM05D005949 ORTHO05D006945 4.9e-50 201.8 219 46.6
HanXRQChr15g0486811 Helianthus annuus HOM05D005949 ORTHO05D006945 4.9e-50 201.8 218 49.5
Nitab4.5_0006683g0100 Nicotiana tabacum HOM05D005949 ORTHO05D006945 8.3e-50 201.1 220 48.2
Nitab4.5_0001562g0070 Nicotiana tabacum HOM05D005949 ORTHO05D006945 1.4e-49 200.3 220 48.2
Aqoxy5G03678 Aquilegia oxysepala HOM05D005949 ORTHO05D006945 2.4e-49 199.5 217 49.8
Duzib264G1167 Durio zibethinus HOM05D005949 ORTHO05D006945 3.2e-49 199.1 217 46.5
ClCG10G013730 Citrullus lanatus HOM05D005949 ORTHO05D006945 5.4e-49 198.4 238 42.4
CSS0029670 Camellia sinensis var. sinensis HOM05D005949 ORTHO05D006945 7.1e-49 198.0 217 47.0
Ca_04380_v3 Cicer arietinum L. HOM05D005949 ORTHO05D006945 7.1e-49 198.0 218 45.4
ATR0199G040 Amborella trichopoda HOM05D005949 ORTHO05D006945 1.2e-48 197.2 217 46.1
SGA_v2.0_scaffold47G17523 Striga asiatica HOM05D005949 ORTHO05D006945 1.6e-48 196.8 222 45.9
CAN.G1235.24 Capsicum annuum HOM05D005949 ORTHO05D006945 2.1e-48 196.4 220 46.4
PGSC0003DMG400018653 Solanum tuberosum HOM05D005949 ORTHO05D006945 2.1e-48 196.4 219 47.0
CsaV3_3G042930 Cucumis sativus L. HOM05D000631 ORTHO05D000524 2.7e-48 196.1 231 44.2
Sopen01g054070 Solanum pennellii HOM05D005949 ORTHO05D006945 2.7e-48 196.1 219 47.0
Lalb_Chr06g0174481 Lupinus albus HOM05D005949 ORTHO05D006945 3.5e-48 195.7 219 45.2
Nn2g12389 Nelumbo nucifera HOM05D005949 ORTHO05D006945 3.5e-48 195.7 217 46.5
Lsat_1_v5_gn_4_184520 Lactuca sativa HOM05D005949 ORTHO05D006945 4.6e-48 195.3 229 45.9
Lj7C602T3 Lonicera japonica HOM05D005949 ORTHO05D006945 6.0e-48 194.9 246 43.5
RhsimUnG0006400 Rhododendron simsii HOM05D005949 ORTHO05D006945 7.8e-48 194.5 219 47.0
RhsimUnG0087200 Rhododendron simsii HOM05D005949 ORTHO05D006945 7.8e-48 194.5 219 47.0
Gohir.A10G101600 Gossypium hirsutum HOM05D005949 ORTHO05D006945 1.0e-47 194.1 217 47.0
Gohir.D10G085800 Gossypium hirsutum HOM05D005949 ORTHO05D006945 1.0e-47 194.1 217 47.0
Gorai.011G094000 Gossypium raimondii HOM05D005949 ORTHO05D006945 1.0e-47 194.1 217 47.0
COL.COLO4_29188 Corchorus olitorius HOM05D005949 ORTHO05D006945 1.3e-47 193.7 217 46.5
MELO3C026595.2 Cucumis melo HOM05D005949 ORTHO05D006945 2.3e-47 193.0 230 43.5
Solyc01g112020.3 Solanum lycopersicum HOM05D005949 ORTHO05D006945 2.3e-47 193.0 219 46.6
Glyma.19G052100 Glycine max HOM05D005949 ORTHO05D006945 8.6e-47 191.0 218 44.5
Os05g0145600 Oryza sativa ssp. japonica HOM05D005949 ORTHO05D006945 8.6e-47 191.0 218 45.9
Thhalv10023015m.g Eutrema salsugineum HOM05D005949 ORTHO05D006945 1.1e-46 190.7 217 46.1
Glyma.05G115200 Glycine max HOM05D005949 ORTHO05D006945 1.1e-46 190.7 229 41.9
PGR083G1217 Punica granatum HOM05D005949 ORTHO05D006945 1.9e-46 189.9 218 45.9
VMungo0464G1442 Vigna mungo HOM05D005949 ORTHO05D006945 1.9e-46 189.9 218 44.0
TWI12G1469 Tripterygium wilfordii HOM05D005949 ORTHO05D006945 2.5e-46 189.5 220 45.9
Lj2g0004695 Lotus japonicus HOM05D005949 ORTHO05D006945 3.3e-46 189.1 218 44.5
Cfa007328 Carpinus fangiana HOM05D005949 ORTHO05D006945 4.3e-46 188.7 219 44.3
ECA232G4961 Erigeron canadensis HOM05D005949 ORTHO05D006945 4.3e-46 188.7 220 45.9
TPR.G16864 Trifolium pratense HOM05D005949 ORTHO05D006945 4.3e-46 188.7 218 44.0
arahy.Tifrunner.gnm1.ann1.4A4JE9 Arachis hypogaea HOM05D005949 ORTHO05D006945 5.6e-46 188.3 217 44.7
FvH4_6g51990 Fragaria vesca HOM05D005949 ORTHO05D006945 7.3e-46 188.0 217 45.2
Haze_14768 Corylus avellana HOM05D005949 ORTHO05D006945 1.2e-45 187.2 230 42.6
Phvul.004G060400 Phaseolus vulgaris HOM05D005949 ORTHO05D006945 2.1e-45 186.4 218 42.2
Psat5g064960 Pisum sativum HOM05D005949 ORTHO05D006945 2.1e-45 186.4 218 43.1
TPR.G8694 Trifolium pratense HOM05D005949 ORTHO05D006945 3.6e-45 185.7 218 43.6
unitig_88.g27782 Utricularia gibba HOM05D005949 ORTHO05D006945 4.7e-45 185.3 219 43.8
Medtr6g021740 Medicago truncatula HOM05D005949 ORTHO05D006945 1.1e-44 184.1 218 42.2
FAN14G1023 Fragaria x ananassa HOM05D005949 ORTHO05D006945 1.8e-44 183.3 217 44.7
FAN09G2334 Fragaria x ananassa HOM05D005949 ORTHO05D006945 2.4e-44 183.0 217 43.8
FAN05G2654 Fragaria x ananassa HOM05D005949 ORTHO05D006945 4.0e-44 182.2 217 44.2
RcHm_v2.0_Chr2g0173461 Rosa chinensis HOM05D005949 ORTHO05D006945 5.2e-44 181.8 217 43.8
AUR62028447 Chenopodium quinoa HOM05D005949 ORTHO05D006945 6.8e-44 181.4 218 42.2
PSO063G1157 Papaver somniferum HOM05D005949 ORTHO05D006945 8.9e-44 181.0 229 44.5
PSO754G0010 Papaver somniferum HOM05D005949 ORTHO05D006945 8.9e-44 181.0 229 44.5
FAN02G3213 Fragaria x ananassa HOM05D005949 ORTHO05D006945 1.2e-43 180.6 216 43.5
Sabra16G0221400 Salix brachista HOM05D005949 ORTHO05D006945 2.6e-43 179.5 219 44.3
Peaxi162Scf00420g00016 Petunia axillaris HOM05D005949 ORTHO05D006945 4.4e-43 178.7 183 51.4
arahy.Tifrunner.gnm1.ann1.BK7H4N Arachis hypogaea HOM05D005949 ORTHO05D006945 1.3e-42 177.2 235 41.3
SHI03792 Sapria himalayana HOM05D005949 ORTHO05D006945 1.1e-41 174.1 222 41.0
Potri.001G341400 Populus trichocarpa HOM05D005949 ORTHO05D006945 9.3e-41 171.0 219 42.9
Zm00001eb354320 Zea mays HOM05D005949 ORTHO05D006945 2.7e-40 169.5 222 41.4
SEGI_30195 Sequoiadendron giganteum HOM05D005949 ORTHO05D006945 7.8e-40 167.9 220 40.9
AUR62043287 Chenopodium quinoa HOM05D005949 ORTHO05D006945 3.0e-39 166.0 209 40.7
EL10Ac6g14123 Beta vulgaris HOM05D005949 ORTHO05D006945 3.9e-39 165.6 281 35.9
Ah.02g128260 Amaranthus hybridus HOM05D005949 ORTHO05D006945 1.9e-38 163.3 254 35.0
HPP92_016937 Vanilla planifolia HOM05D005949 ORTHO05D006945 7.1e-33 144.8 218 41.3
DCAR_021740 Daucus carota HOM05D005949 ORTHO05D006945 9.3e-33 144.4 210 37.6
CSS0002019 Camellia sinensis var. sinensis HOM05D005949 ORTHO05D006945 4.6e-32 142.1 217 39.2
Psat1g081680 Pisum sativum HOM05D005949 ORTHO05D006945 6.9e-28 128.3 85 68.2
Actinidia36134 Actinidia chinensis HOM05D005949 ORTHO05D006945 9.3e-25 117.9 95 56.8
Duzib147G0933 Durio zibethinus HOM05D005949 ORTHO05D006945 2.1e-24 116.7 153 39.2
MD09G1021100 Malus domestica HOM05D005949 ORTHO05D006945 4.6e-24 115.5 90 57.8
Hma1.2p1_0818F.1_g223360 Hydrangea macrophylla HOM05D005949 ORTHO05D006945 7.9e-24 114.8 85 61.2
SMO201G0168 Selaginella moellendorffii HOM05D005949 ORTHO05D006945 5.3e-20 102.1 123 37.4
Sc09g0007150 Simmondsia chinensis HOM05D005949 ORTHO05D006945 3.4e-19 99.4 166 36.7
Pp3c1_21850 Physcomitrium patens HOM05D005949 ORTHO05D006945 5.8e-19 98.6 228 28.1
Pp3c14_7210 Physcomitrium patens HOM05D005949 ORTHO05D006945 4.9e-18 95.5 228 26.8
Mapoly0062s0069 Marchantia polymorpha HOM05D005949 ORTHO05D006945 1.0e-15 87.8 154 27.3
Dinv25719 Davidia involucrata HOM05D005949 ORTHO05D006945 3.0e-15 86.3 126 38.9
CBR_g20410 Chara braunii HOM05D005949 ORTHO05D006945 2.5e-14 83.2 127 33.1
CBR_g20407 Chara braunii HOM05D005949 ORTHO05D006945 3.3e-14 82.8 121 33.9
AagrBONN_evm.TU.Sc2ySwM_117.2156 Anthoceros agrestis HOM05D005949 ORTHO05D006945 8.2e-13 78.2 141 30.5
Sp7g33630 Schrenkiella parvula HOM05D005949 ORTHO05D006945 1.2e-11 74.3 40 85.0
Sc07g0004370 Simmondsia chinensis HOM05D005949 ORTHO05D006945 1.2e-11 74.3 66 56.1
Actinidia36133 Actinidia chinensis HOM05D005949 ORTHO05D006945 5.8e-11 72.0 51 64.7
CSS0020931 Camellia sinensis var. sinensis HOM05D005949 ORTHO05D006945 5.8e-11 72.0 126 34.1
vmacro05885 Vaccinium macrocarpon HOM05D005949 ORTHO05D006945 1.0e-10 71.2 46 69.6
Cpa.g.sc130.71 Carica papaya HOM05D005949 ORTHO05D006945 3.8e-10 69.3 46 67.4
Actinidia05972 Actinidia chinensis HOM05D005088 ORTHO05D006914 5.0e-10 68.9 68 44.1
CDE04G3731 Ceratophyllum demersum HOM05D005949 ORTHO05D006945 8.4e-10 68.2 55 58.2
CDE04G3569 Ceratophyllum demersum HOM05D005949 ORTHO05D006945 3.5e-08 62.8 126 30.2
Sc07g0004380 Simmondsia chinensis HOM05D005949 ORTHO05D006945 3.5e-08 62.8 50 58.0
MBI10_g15883_MAGBIO Magnolia biondii HOM05D005949 ORTHO05D006945 6.1e-08 62.0 52 53.8
MBI10_g37260_MAGBIO Magnolia biondii HOM05D005949 ORTHO05D006945 6.1e-08 62.0 52 53.8
MBI07_g20478_MAGBIO Magnolia biondii HOM05D000141 ORTHO05D001968 3.0e-07 59.7 64 46.9
Zm00001eb120940 Zea mays HOM05D005949 ORTHO05D006945 1.1e-06 57.8 129 28.7


User provided reference genes

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