Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G12620 Arabidopsis lyrata HOM05D007191 ORTHO05D009370 5.9e-200 700.7 356 100.0
AT4G38020 Arabidopsis thaliana HOM05D007191 ORTHO05D009370 1.3e-178 629.8 351 90.6
Thhalv10025567m.g Eutrema salsugineum HOM05D007191 ORTHO05D009370 2.4e-177 625.5 355 88.7
Carub.0007s0220 Capsella rubella HOM05D007191 ORTHO05D009370 6.0e-176 620.9 354 87.9
Sp7g35660 Schrenkiella parvula HOM05D007191 ORTHO05D009370 7.8e-176 620.5 355 88.5
CARHR246430 Cardamine hirsuta HOM05D007191 ORTHO05D009370 8.6e-175 617.1 355 88.7
C01p01190 Brassica napus HOM05D007191 ORTHO05D009370 3.1e-164 582.0 351 84.9
A01p01070 Brassica napus HOM05D007191 ORTHO05D009370 6.8e-164 580.9 351 85.2
BraA01t00105Z Brassica rapa HOM05D007191 ORTHO05D009370 6.8e-164 580.9 351 85.2
BcaNung00953 Brassica carinata HOM05D007191 ORTHO05D009370 1.2e-163 580.1 351 84.6
BolC1t00117H Brassica oleracea HOM05D007191 ORTHO05D009370 4.4e-163 578.2 351 84.3
BcaNung05371 Brassica carinata HOM05D007191 ORTHO05D009370 2.3e-159 565.8 353 83.6
Aa31LG6G14960 Aethionema arabicum HOM05D007191 ORTHO05D009370 2.7e-144 515.8 376 72.1
THA.LOC104804178 Tarenaya hassleriana HOM05D007191 ORTHO05D009370 1.7e-130 469.9 337 71.8
Cpa.g.sc55.6 Carica papaya HOM05D007191 ORTHO05D009370 2.6e-115 419.5 356 64.0
Dinv13563 Davidia involucrata HOM05D007191 ORTHO05D009370 1.2e-112 410.6 346 63.3
QL06p036361 Quercus lobata HOM05D007191 ORTHO05D009370 3.6e-112 409.1 292 70.2
CsaV3_3G006990 Cucumis sativus L. HOM05D007191 ORTHO05D009370 1.4e-111 407.1 293 68.6
Dinv36956 Davidia involucrata HOM05D007191 ORTHO05D009370 1.4e-111 407.1 346 63.3
Prupe.6G204900 Prunus persica HOM05D007191 ORTHO05D009370 1.4e-111 407.1 351 61.5
MELO3C014951.2 Cucumis melo HOM05D007191 ORTHO05D009370 1.8e-111 406.8 293 68.9
GSVIVG01003951001 Vitis vinifera HOM05D007191 ORTHO05D003232 3.0e-111 406.0 301 68.1
MD01G1041100 Malus domestica HOM05D007191 ORTHO05D009370 5.7e-110 401.7 351 61.5
ClCG10G008240 Citrullus lanatus HOM05D007191 ORTHO05D009370 4.8e-109 398.7 296 67.9
Atru.chr3.1215 Acer truncatum HOM05D007191 ORTHO05D009370 1.8e-108 396.7 332 63.0
RcHm_v2.0_Chr2g0110691 Rosa chinensis HOM05D007191 ORTHO05D003232 9.1e-108 394.4 293 68.6
Nitab4.5_0000402g0060 Nicotiana tabacum HOM05D007191 ORTHO05D009370 1.2e-107 394.0 339 60.5
Eucgr.H02435 Eucalyptus grandis HOM05D007191 ORTHO05D009370 4.5e-107 392.1 350 59.4
CiPaw.07G045700 Carya illinoinensis HOM05D007191 ORTHO05D009370 7.7e-107 391.3 302 65.2
COL.COLO4_27378 Corchorus olitorius HOM05D007191 ORTHO05D009370 7.7e-107 391.3 297 65.7
FvH4_1g19321 Fragaria vesca HOM05D007191 ORTHO05D009370 1.3e-106 390.6 325 63.4
Gohir.A11G207400 Gossypium hirsutum HOM05D007191 ORTHO05D009370 1.3e-106 390.6 328 62.5
Ciclev10025907m.g Citrus clementina HOM05D007191 ORTHO05D009370 5.0e-106 388.7 339 60.2
TWI74G0882 Tripterygium wilfordii HOM05D007191 ORTHO05D009370 6.5e-106 388.3 364 59.3
Peaxi162Scf00085g00523 Petunia axillaris HOM05D007191 ORTHO05D009370 3.2e-105 386.0 289 67.8
Thecc.01G088100 Theobroma cacao HOM05D007191 ORTHO05D009370 3.2e-105 386.0 347 58.8
CSS0046556 Camellia sinensis var. sinensis HOM05D007191 ORTHO05D009370 5.5e-105 385.2 289 67.8
FAN19G2137 Fragaria x ananassa HOM05D007191 ORTHO05D000122 1.2e-104 384.0 321 63.2
Gorai.007G232000 Gossypium raimondii HOM05D007191 ORTHO05D009370 1.2e-104 384.0 328 61.9
Sopen11g005640 Solanum pennellii HOM05D007191 ORTHO05D009370 1.2e-104 384.0 339 59.6
Duzib147G1243 Durio zibethinus HOM05D007191 ORTHO05D009370 1.6e-104 383.6 333 60.4
FAN19G0835 Fragaria x ananassa HOM05D007191 ORTHO05D000122 1.6e-104 383.6 321 62.9
Gohir.D11G215700 Gossypium hirsutum HOM05D007191 ORTHO05D009370 1.6e-104 383.6 328 61.9
Manes.13G101800 Manihot esculenta HOM05D007191 ORTHO05D009370 3.6e-104 382.5 344 59.9
Psat4g117600 Pisum sativum HOM05D007191 ORTHO05D009370 4.7e-104 382.1 284 65.8
Solyc11g010900.2 Solanum lycopersicum HOM05D007191 ORTHO05D009370 4.7e-104 382.1 341 58.9
vmacro13023 Vaccinium macrocarpon HOM05D007191 ORTHO05D009370 4.7e-104 382.1 359 59.3
Actinidia25299 Actinidia chinensis HOM05D007191 ORTHO05D009370 6.1e-104 381.7 344 59.3
Ca_22623_v3 Cicer arietinum L. HOM05D007191 ORTHO05D009370 7.9e-104 381.3 314 62.1
Haze_03901 Corylus avellana HOM05D007191 ORTHO05D009370 1.0e-103 380.9 417 52.5
MBI16_g30311_MAGBIO Magnolia biondii HOM05D007191 ORTHO05D009370 8.8e-103 377.9 317 62.5
CANSAT01G2982 Cannabis sativa HOM05D007191 ORTHO05D009370 2.0e-102 376.7 330 61.5
Manes.13G092280 Manihot esculenta HOM05D007191 ORTHO05D009370 2.6e-102 376.3 344 59.0
Medtr8g068220 Medicago truncatula HOM05D007191 ORTHO05D009370 2.2e-101 373.2 283 66.1
Lsat_1_v5_gn_4_142441 Lactuca sativa HOM05D007191 ORTHO05D009370 1.1e-100 370.9 344 57.0
AUR62003688 Chenopodium quinoa HOM05D007191 ORTHO05D009370 1.4e-100 370.5 317 60.6
Glyma.08G276900 Glycine max HOM05D007191 ORTHO05D009370 2.4e-100 369.8 283 64.7
PSO675G0552 Papaver somniferum HOM05D007191 ORTHO05D009370 7.0e-100 368.2 329 59.0
VMungo0251G2065 Vigna mungo HOM05D007191 ORTHO05D009370 1.2e-99 367.5 282 64.2
HanXRQChr09g0259541 Helianthus annuus HOM05D007191 ORTHO05D009370 2.0e-99 366.7 296 64.5
AUR62018000 Chenopodium quinoa HOM05D007191 ORTHO05D009370 4.5e-99 365.5 328 58.5
Lalb_Chr16g0392111 Lupinus albus HOM05D007191 ORTHO05D009370 4.5e-99 365.5 282 64.9
TPR.G29816 Trifolium pratense HOM05D007191 ORTHO05D009370 7.7e-99 364.8 283 63.6
Lj4g0026970 Lotus japonicus HOM05D007191 ORTHO05D009370 1.7e-98 363.6 282 65.2
Cfa006863 Carpinus fangiana HOM05D007191 ORTHO05D000122 3.8e-98 362.5 378 55.8
Phvul.003G287700 Phaseolus vulgaris HOM05D007191 ORTHO05D009370 8.5e-98 361.3 282 63.5
Sed0016887 Sechium edule HOM05D007191 ORTHO05D009370 1.5e-97 360.5 303 63.0
Ah.03g143260 Amaranthus hybridus HOM05D007191 ORTHO05D009370 9.4e-97 357.8 307 61.2
PSO541G2681 Papaver somniferum HOM05D007191 ORTHO05D009370 9.4e-97 357.8 326 58.6
arahy.Tifrunner.gnm1.ann1.DV4H7C Arachis hypogaea HOM05D007191 ORTHO05D009370 1.2e-96 357.5 283 65.4
Aqoxy6G01485 Aquilegia oxysepala HOM05D007191 ORTHO05D009370 2.7e-96 356.3 289 62.3
Nitab4.5_0005446g0010 Nicotiana tabacum HOM05D007191 ORTHO05D009370 4.7e-96 355.5 327 59.9
Potri.005G147600 Populus trichocarpa HOM05D007191 ORTHO05D009370 3.0e-95 352.8 339 56.9
MSTRG.23388 Avicennia marina HOM05D007191 ORTHO05D009370 2.0e-94 350.1 339 54.9
Oeu017115.1 Olea europaea HOM05D007191 ORTHO05D009370 2.2e-93 346.7 331 56.5
Sabra05G0118000 Salix brachista HOM05D007191 ORTHO05D009370 2.2e-93 346.7 292 61.6
Migut.H02278 Erythranthe guttata HOM05D007191 ORTHO05D009370 2.8e-93 346.3 317 58.7
CDE04G1458 Ceratophyllum demersum HOM05D007191 ORTHO05D009370 3.1e-92 342.8 291 59.1
SalBow3G4077 Salvia bowleyana HOM05D007191 ORTHO05D009370 1.1e-89 334.3 310 58.4
Nn5g29827 Nelumbo nucifera HOM05D007191 ORTHO05D009370 7.2e-89 331.6 289 59.9
Sc03g0000490 Simmondsia chinensis HOM05D007191 ORTHO05D009370 1.0e-87 327.8 296 57.8
arahy.Tifrunner.gnm1.ann1.6T17AW Arachis hypogaea HOM05D007191 ORTHO05D009370 3.1e-84 316.2 353 51.6
CAN.G1771.10 Capsicum annuum HOM05D007191 ORTHO05D009370 2.2e-82 310.1 248 62.1
DCAR_003441 Daucus carota HOM05D007191 ORTHO05D003232 3.2e-81 306.2 246 64.2
Os03g0685100 Oryza sativa ssp. japonica HOM05D007191 ORTHO05D009370 1.6e-80 303.9 283 55.8
SGA_v2.0_scaffold108G30936 Striga asiatica HOM05D007191 ORTHO05D009370 2.1e-80 303.5 284 57.0
unitig_27.g25347 Utricularia gibba HOM05D007191 ORTHO05D009370 6.8e-79 298.5 297 54.9
ECA232G3284 Erigeron canadensis HOM05D000006 ORTHO05D000001 2.4e-76 290.0 245 61.6
Lj2A526T20 Lonicera japonica HOM05D007191 ORTHO05D009370 3.8e-74 282.7 293 52.2
HPP92_014152 Vanilla planifolia HOM05D007191 ORTHO05D009370 2.5e-73 280.0 292 53.4
PGSC0003DMG400016118 Solanum tuberosum HOM05D007191 ORTHO05D009370 1.2e-72 277.7 200 67.5
SMO364G0498 Selaginella moellendorffii HOM05D007191 ORTHO05D009370 1.0e-71 274.6 319 47.0
HPP92_014172 Vanilla planifolia HOM05D007191 ORTHO05D009370 3.4e-70 269.6 301 51.2
Pp3c5_6200 Physcomitrium patens HOM05D007191 ORTHO05D009370 7.5e-70 268.5 314 46.2
Zm00001eb053350 Zea mays HOM05D007191 ORTHO05D009370 4.9e-69 265.8 261 52.5
Mapoly0036s0111 Marchantia polymorpha HOM05D007191 ORTHO05D009370 6.2e-64 248.8 323 44.6
CBR_g31860 Chara braunii HOM05D000601 ORTHO05D000407 2.9e-61 240.0 305 43.6
AUR62043608 Chenopodium quinoa HOM05D007191 ORTHO05D009370 3.7e-53 213.0 148 68.2
Pp3c5_6210 Physcomitrium patens HOM05D007191 ORTHO05D009370 2.4e-52 210.3 231 47.2
AUR62014153 Chenopodium quinoa HOM05D007191 ORTHO05D002709 6.8e-47 192.2 137 65.7
Cc00_g34880 Coffea canephora HOM05D007191 ORTHO05D009370 2.0e-46 190.7 160 61.2
PGR102G1719 Punica granatum HOM05D007191 ORTHO05D009370 2.6e-46 190.3 197 53.3
MCO07G132 Micromonas commoda HOM05D007191 ORTHO05D009370 1.3e-45 188.0 291 38.1
Cre17.g744947 Chlamydomonas reinhardtii HOM05D007191 ORTHO05D009370 1.8e-39 167.5 382 33.2
SEGI_38116 Sequoiadendron giganteum HOM05D007191 ORTHO05D009370 1.1e-33 148.3 163 46.0
PRCOL_00003319 Prasinoderma coloniale HOM05D007191 ORTHO05D009370 3.6e-32 143.3 304 35.5
SEGI_29034 Sequoiadendron giganteum HOM05D007191 ORTHO05D009370 2.5e-25 120.6 147 46.3
Cc07_g13870 Coffea canephora HOM05D007191 ORTHO05D003232 6.4e-21 105.9 70 67.1
Cc07_g13860 Coffea canephora HOM05D007191 ORTHO05D009370 2.7e-19 100.5 92 53.3
RcHm_v2.0_Chr6g0269301 Rosa chinensis HOM05D007191 ORTHO05D009370 2.5e-17 94.0 102 51.0
Ca_28666_v3 Cicer arietinum L. HOM05D005801 ORTHO05D009370 1.2e-11 75.1 153 34.0
HanXRQChr10g0318941 Helianthus annuus HOM05D005801 ORTHO05D008555 1.4e-07 61.6 170 33.5
HanXRQChr14g0438761 Helianthus annuus HOM05D005801 ORTHO05D008555 1.4e-07 61.6 170 33.5
Lsat_1_v5_gn_5_144900 Lactuca sativa HOM05D005801 ORTHO05D008555 1.4e-07 61.6 164 32.3
HPP92_009088 Vanilla planifolia HOM05D005801 ORTHO05D008555 2.4e-07 60.8 244 26.2
HanXRQChr10g0318931 Helianthus annuus HOM05D005801 ORTHO05D008555 3.1e-07 60.5 170 32.9
MSTRG.10602 Avicennia marina HOM05D005801 ORTHO05D008555 9.0e-07 58.9 215 27.9
Lj4P387T11 Lonicera japonica HOM05D005801 ORTHO05D008555 1.5e-06 58.2 216 27.3
ECA234G2262 Erigeron canadensis HOM05D005801 ORTHO05D008555 2.0e-06 57.8 243 26.3
GSVIVG01015302001 Vitis vinifera HOM05D005801 ORTHO05D008555 3.4e-06 57.0 216 27.3
Nitab4.5_0000066g0110 Nicotiana tabacum HOM05D005801 ORTHO05D008555 7.6e-06 55.8 213 27.7
Nitab4.5_0001703g0010 Nicotiana tabacum HOM05D005801 ORTHO05D008555 1.0e-05 55.5 177 30.5
Oeu053186.1 Olea europaea HOM05D005801 ORTHO05D008555 1.0e-05 55.5 246 26.8


User provided reference genes

Program Settings