Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G50720 Arabidopsis lyrata HOM05D000880 ORTHO05D004760 0.0e+00 1576.6 851 100.0
AT4G02400 Arabidopsis thaliana HOM05D000880 ORTHO05D004760 0.0e+00 1455.7 856 92.2
Carub.0006s3476 Capsella rubella HOM05D000880 ORTHO05D004760 0.0e+00 1349.0 846 86.8
Sp6g02280 Schrenkiella parvula HOM05D000880 ORTHO05D004760 0.0e+00 1276.5 852 81.9
CARHR250590 Cardamine hirsuta HOM05D000880 ORTHO05D004760 0.0e+00 1258.8 860 81.0
Aa31LG5G2040 Aethionema arabicum HOM05D000880 ORTHO05D004760 0.0e+00 1236.5 867 78.9
Thhalv10028424m.g Eutrema salsugineum HOM05D000880 ORTHO05D004760 0.0e+00 1214.9 845 78.3
BcaC03g16120 Brassica carinata HOM05D000880 ORTHO05D004760 0.0e+00 1199.9 857 77.9
BcaB05g23626 Brassica carinata HOM05D000880 ORTHO05D004760 0.0e+00 1190.3 851 78.4
BolC2t09905H Brassica oleracea HOM05D000880 ORTHO05D004760 0.0e+00 1184.5 884 74.0
A02p24660 Brassica napus HOM05D000880 ORTHO05D004760 0.0e+00 1167.5 863 75.9
C02p38920 Brassica napus HOM05D000880 ORTHO05D004760 0.0e+00 1156.0 872 75.0
BraA02t07457Z Brassica rapa HOM05D000880 ORTHO05D004760 0.0e+00 1129.0 887 73.2
Thhalv10015339m.g Eutrema salsugineum HOM05D000880 ORTHO05D004760 3.6e-304 1048.1 815 73.6
Carub.0006s0757 Capsella rubella HOM05D000880 ORTHO05D004760 1.1e-303 1046.6 840 71.1
AL6G19330 Arabidopsis lyrata HOM05D000880 ORTHO05D004760 7.3e-297 1023.8 836 69.7
AT5G08600 Arabidopsis thaliana HOM05D000880 ORTHO05D004760 4.9e-293 1011.1 863 68.6
THA.LOC104801276 Tarenaya hassleriana HOM05D000880 ORTHO05D004760 3.2e-276 955.3 856 65.1
A09p01860 Brassica napus HOM05D000880 ORTHO05D004760 1.2e-275 953.4 852 66.2
BcaNung04048 Brassica carinata HOM05D000880 ORTHO05D004760 7.1e-268 927.5 859 65.1
Dinv33059 Davidia involucrata HOM05D000880 ORTHO05D004760 1.4e-234 817.0 894 54.7
Cpa.g.sc229.11 Carica papaya HOM05D000880 ORTHO05D004760 1.4e-231 807.0 913 55.6
Thecc.01G301500 Theobroma cacao HOM05D000880 ORTHO05D004760 1.4e-226 790.4 890 53.5
Oeu000551.1 Olea europaea HOM05D000880 ORTHO05D004760 1.5e-225 786.9 865 54.6
Manes.01G219900 Manihot esculenta HOM05D000880 ORTHO05D004760 1.3e-224 783.9 891 53.2
Duzib138G0681 Durio zibethinus HOM05D000880 ORTHO05D004760 2.2e-224 783.1 877 53.4
GSVIVG01028028001 Vitis vinifera HOM05D000880 ORTHO05D004760 9.1e-223 777.7 888 53.9
Eucgr.K03490 Eucalyptus grandis HOM05D000880 ORTHO05D004760 1.2e-222 777.3 889 52.6
Ciclev10027776m.g Citrus clementina HOM05D000880 ORTHO05D004760 1.6e-222 776.9 891 52.6
Lj2A1196T50 Lonicera japonica HOM05D000880 ORTHO05D004760 2.5e-220 769.6 886 52.0
Gorai.008G144800 Gossypium raimondii HOM05D000880 ORTHO05D004760 3.2e-220 769.2 883 55.8
Gohir.D12G133800 Gossypium hirsutum HOM05D000880 ORTHO05D004760 1.2e-219 767.3 883 55.6
Gohir.A12G130000 Gossypium hirsutum HOM05D000880 ORTHO05D004760 3.6e-219 765.8 867 54.9
BcaB01g02051 Brassica carinata HOM05D000880 ORTHO05D004760 8.0e-219 764.6 743 62.7
Cc01_g20920 Coffea canephora HOM05D000880 ORTHO05D004760 1.4e-218 763.8 877 54.3
QL12p028379 Quercus lobata HOM05D000880 ORTHO05D004760 3.3e-217 759.2 900 52.9
Hma1.2p1_0494F.1_g165220 Hydrangea macrophylla HOM05D000880 ORTHO05D004760 9.7e-217 757.7 897 52.3
CSS0046847 Camellia sinensis var. sinensis HOM05D000880 ORTHO05D004760 4.8e-216 755.4 888 52.3
Atru.chr3.2809 Acer truncatum HOM05D000880 ORTHO05D004760 2.7e-214 749.6 874 52.6
Nitab4.5_0002995g0010 Nicotiana tabacum HOM05D000880 ORTHO05D004760 1.3e-213 747.3 881 52.1
TAR362G0476 Trochodendron aralioides HOM05D000880 ORTHO05D004760 3.8e-213 745.7 905 51.4
CANSAT25G3354 Cannabis sativa HOM05D000880 ORTHO05D004760 1.5e-212 743.8 871 52.5
Cfa005904 Carpinus fangiana HOM05D000880 ORTHO05D004760 7.2e-212 741.5 843 54.0
PGSC0003DMG400023908 Solanum tuberosum HOM05D000880 ORTHO05D004760 9.4e-212 741.1 860 52.9
Haze_04946 Corylus avellana HOM05D000880 ORTHO05D004760 1.2e-211 740.7 829 54.4
MELO3C015997.2 Cucumis melo HOM05D000880 ORTHO05D004760 2.1e-211 740.0 889 50.3
Solyc09g005760.3 Solanum lycopersicum HOM05D000880 ORTHO05D004760 3.6e-211 739.2 879 52.9
CsaV3_7G029310 Cucumis sativus L. HOM05D000880 ORTHO05D004760 8.0e-211 738.0 889 50.3
Migut.C01322 Erythranthe guttata HOM05D000880 ORTHO05D004760 4.0e-210 735.7 890 51.7
CSS0022271 Camellia sinensis var. sinensis HOM05D000880 ORTHO05D004760 5.2e-210 735.3 858 52.7
CiPaw.07G109900 Carya illinoinensis HOM05D000880 ORTHO05D004760 6.8e-210 734.9 886 51.9
Sopen09g001650 Solanum pennellii HOM05D000880 ORTHO05D004760 2.6e-209 733.0 897 51.6
ClCG09G005830 Citrullus lanatus HOM05D000880 ORTHO05D004760 3.7e-208 729.2 889 49.6
Sed0027832 Sechium edule HOM05D000880 ORTHO05D004760 1.1e-207 727.6 885 50.5
PGR044G0963 Punica granatum HOM05D000880 ORTHO05D004760 3.1e-207 726.1 882 50.5
SalBow7G4572 Salvia bowleyana HOM05D000880 ORTHO05D004760 1.2e-206 724.2 883 50.7
CAN.G125.1 Capsicum annuum HOM05D000880 ORTHO05D004760 2.7e-206 723.0 863 52.5
Sed0021307 Sechium edule HOM05D000880 ORTHO05D004760 7.7e-206 721.5 873 50.3
Hund25319 Selenicereus undatus HOM05D000880 ORTHO05D004760 1.7e-205 720.3 880 49.7
Nn3g21505 Nelumbo nucifera HOM05D000880 ORTHO05D004760 2.3e-205 719.9 872 51.9
COL.COLO4_23336 Corchorus olitorius HOM05D000880 ORTHO05D004760 3.8e-205 719.2 861 51.5
Potri.014G128300 Populus trichocarpa HOM05D000880 ORTHO05D004760 5.0e-205 718.8 886 49.3
PSO541G5609 Papaver somniferum HOM05D000880 ORTHO05D004760 6.6e-205 718.4 883 51.0
SGA_v2.0_scaffold24G10608 Striga asiatica HOM05D000880 ORTHO05D004760 1.5e-204 717.2 864 52.9
Sc04g0008900 Simmondsia chinensis HOM05D000880 ORTHO05D004760 1.9e-204 716.8 881 50.9
Ah.07g202710 Amaranthus hybridus HOM05D000880 ORTHO05D004760 2.8e-203 713.0 869 51.1
Lalb_Chr18g0046951 Lupinus albus HOM05D000880 ORTHO05D004760 4.7e-203 712.2 893 49.8
SalBow5G3782 Salvia bowleyana HOM05D000880 ORTHO05D004760 8.9e-202 708.0 885 50.6
PSO675G6830 Papaver somniferum HOM05D000880 ORTHO05D004760 1.2e-201 707.6 887 51.4
Lj1g0000333 Lotus japonicus HOM05D000880 ORTHO05D004760 3.4e-201 706.1 893 49.2
TWI14G0456 Tripterygium wilfordii HOM05D000880 ORTHO05D004760 3.4e-201 706.1 914 50.4
Peaxi162Scf00039g00620 Petunia axillaris HOM05D000880 ORTHO05D004760 2.8e-200 703.0 806 53.2
DCAR_015239 Daucus carota HOM05D000880 ORTHO05D004760 1.8e-199 700.3 808 51.7
arahy.Tifrunner.gnm1.ann1.FAXC2W Arachis hypogaea HOM05D000880 ORTHO05D004760 9.2e-199 698.0 894 50.7
Phvul.001G207700 Phaseolus vulgaris HOM05D000880 ORTHO05D004760 1.6e-198 697.2 886 51.7
Glyma.19G211500 Glycine max HOM05D000880 ORTHO05D004760 1.0e-197 694.5 896 50.9
AUR62026599 Chenopodium quinoa HOM05D000880 ORTHO05D004760 2.9e-197 693.0 859 49.7
Potri.002G203700 Populus trichocarpa HOM05D000880 ORTHO05D004760 2.9e-197 693.0 888 48.3
MD11G1308900 Malus domestica HOM05D000880 ORTHO05D004760 2.5e-196 689.9 896 50.8
arahy.Tifrunner.gnm1.ann1.DCE7TU Arachis hypogaea HOM05D000880 ORTHO05D004760 3.3e-196 689.5 898 49.9
Glyma.03G214900 Glycine max HOM05D000880 ORTHO05D004760 4.3e-196 689.1 896 50.9
FAN20G0148 Fragaria x ananassa HOM05D000880 ORTHO05D007053 1.2e-193 681.0 892 48.5
vmacro15153 Vaccinium macrocarpon HOM05D000880 ORTHO05D004760 3.4e-193 679.5 860 49.9
EL10Ac9g22871 Beta vulgaris HOM05D000880 ORTHO05D004760 4.4e-193 679.1 814 52.8
FAN27G2693 Fragaria x ananassa HOM05D000880 ORTHO05D004760 5.8e-193 678.7 874 48.9
Aqoxy2G02932 Aquilegia oxysepala HOM05D000880 ORTHO05D004760 9.8e-193 677.9 892 48.0
Sabra02G0155400 Salix brachista HOM05D000880 ORTHO05D004760 1.3e-192 677.6 869 48.3
MD03G1289000 Malus domestica HOM05D000880 ORTHO05D004760 1.7e-192 677.2 889 50.8
Ca_09177_v3 Cicer arietinum L. HOM05D000880 ORTHO05D004760 1.6e-190 670.6 877 49.0
RcHm_v2.0_Chr6g0294141 Rosa chinensis HOM05D000880 ORTHO05D004760 2.3e-189 666.8 896 49.3
Lsat_1_v5_gn_5_191521 Lactuca sativa HOM05D000880 ORTHO05D004760 8.6e-189 664.8 832 50.2
FAN24G3174 Fragaria x ananassa HOM05D000880 ORTHO05D007053 9.5e-188 661.4 887 47.6
Psat3g021720 Pisum sativum HOM05D000880 ORTHO05D004760 3.1e-186 656.4 866 48.5
FAN15G1023 Fragaria x ananassa HOM05D000880 ORTHO05D007053 4.0e-186 656.0 876 48.2
Rhsim01G0285600 Rhododendron simsii HOM05D000880 ORTHO05D004760 6.8e-186 655.2 825 50.1
MSTRG.25483 Avicennia marina HOM05D000880 ORTHO05D004760 2.9e-184 649.8 755 51.4
Rhsim11G0035900 Rhododendron simsii HOM05D000880 ORTHO05D004760 3.7e-184 649.4 831 49.6
FvH4_2g25830 Fragaria vesca HOM05D000880 ORTHO05D004760 3.2e-183 646.4 835 48.6
AUR62005314 Chenopodium quinoa HOM05D000880 ORTHO05D004760 4.6e-182 642.5 868 46.9
HPP92_011847 Vanilla planifolia HOM05D000880 ORTHO05D004760 2.5e-180 636.7 866 47.9
HanXRQChr01g0001311 Helianthus annuus HOM05D000880 ORTHO05D004760 3.3e-180 636.3 861 48.0
Hma1.2p1_1471F.1_g285620 Hydrangea macrophylla HOM05D000880 ORTHO05D004760 7.5e-177 625.2 774 50.3
Medtr7g108730 Medicago truncatula HOM05D000880 ORTHO05D004760 6.4e-176 622.1 881 45.5
Os03g0343300 Oryza sativa ssp. japonica HOM05D000880 ORTHO05D004760 6.4e-176 622.1 861 48.2
TPR.G9606 Trifolium pratense HOM05D000880 ORTHO05D004760 2.7e-174 616.7 879 45.2
unitig_747.g21560 Utricularia gibba HOM05D000880 ORTHO05D004760 3.9e-173 612.8 870 48.0
C09p01900 Brassica napus HOM05D000880 ORTHO05D004760 2.2e-168 597.0 871 47.6
BolC9t53125H Brassica oleracea HOM05D000880 ORTHO05D004760 2.2e-168 597.0 871 47.6
Zm00001eb016440 Zea mays HOM05D000880 ORTHO05D004760 1.0e-165 588.2 861 46.5
Nitab4.5_0004207g0040 Nicotiana tabacum HOM05D000880 ORTHO05D004760 3.0e-165 586.6 887 44.2
PSO478G4138 Papaver somniferum HOM05D000880 ORTHO05D004760 8.7e-165 585.1 749 49.7
ECA248G0121 Erigeron canadensis HOM05D000880 ORTHO05D004760 2.4e-162 577.0 858 45.5
ATR0100G058 Amborella trichopoda HOM05D000880 ORTHO05D004760 3.2e-159 566.6 877 42.5
Medtr3g113240 Medicago truncatula HOM05D000880 ORTHO05D004760 4.2e-159 566.2 855 44.0
Oeu028138.2 Olea europaea HOM05D000880 ORTHO05D004760 3.1e-154 550.1 769 46.6
Nitab4.5_0007049g0030 Nicotiana tabacum HOM05D000880 ORTHO05D004760 1.0e-141 508.4 611 49.8
Actinidia26752 Actinidia chinensis HOM05D000880 ORTHO05D004760 1.8e-138 497.7 575 54.1
Atru.chr5.2474 Acer truncatum HOM05D000880 ORTHO05D004760 1.0e-133 481.9 649 48.2
Prupe.8G262300 Prunus persica HOM05D000880 ORTHO05D004760 9.0e-130 468.8 643 48.7
BolC4t25292H Brassica oleracea HOM05D000880 ORTHO05D004760 2.2e-128 464.2 383 70.2
SEGI_18392 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 2.9e-128 463.8 1066 35.7
BcaC07g42028 Brassica carinata HOM05D000880 ORTHO05D004760 5.0e-128 463.0 401 68.8
BcaC02g09729 Brassica carinata HOM05D000880 ORTHO05D004760 2.5e-127 460.7 383 70.0
CDE05G0797 Ceratophyllum demersum HOM05D000880 ORTHO05D004760 2.1e-126 457.6 836 42.0
C02p30160 Brassica napus HOM05D000880 ORTHO05D004760 5.3e-122 443.0 392 67.9
BcaC06g34728 Brassica carinata HOM05D000880 ORTHO05D004760 4.5e-121 439.9 345 72.5
Medtr7g091790 Medicago truncatula HOM05D000880 ORTHO05D004760 1.8e-117 427.9 819 37.9
C08p50820 Brassica napus HOM05D000880 ORTHO05D004760 7.4e-116 422.5 381 66.7
SMO146G0364 Selaginella moellendorffii HOM05D000880 ORTHO05D004760 6.1e-110 402.9 901 35.0
VMungo1383G0181 Vigna mungo HOM05D000880 ORTHO05D004760 1.5e-108 398.3 435 52.9
Mapoly0012s0035 Marchantia polymorpha HOM05D000880 ORTHO05D004760 3.1e-106 390.6 1046 33.9
BcaC08g44566 Brassica carinata HOM05D000880 ORTHO05D004760 7.7e-105 386.0 345 65.5
MBI19_g43564_MAGBIO Magnolia biondii HOM05D000880 ORTHO05D004760 2.3e-101 374.4 409 53.8
BcaC03g15404 Brassica carinata HOM05D000880 ORTHO05D001048 2.8e-99 367.5 287 72.8
PSO541G3373 Papaver somniferum HOM05D000880 ORTHO05D004760 2.8e-99 367.5 441 50.8
BolC8t52610H Brassica oleracea HOM05D000880 ORTHO05D004760 1.7e-96 358.2 291 70.4
Pp3c9_17240 Physcomitrium patens HOM05D000880 ORTHO05D004760 4.2e-87 327.0 988 30.8
PSO782G1438 Papaver somniferum HOM05D000880 ORTHO05D004760 1.6e-86 325.1 468 47.6
AagrBONN_evm.TU.Sc2ySwM_117.3282 Anthoceros agrestis HOM05D000880 ORTHO05D004760 1.8e-85 321.6 909 33.3
BraA04t17148Z Brassica rapa HOM05D000880 ORTHO05D004760 3.7e-83 313.9 290 65.5
A04p15040 Brassica napus HOM05D000880 ORTHO05D004760 4.1e-82 310.5 291 65.3
A09p11280 Brassica napus HOM05D000880 ORTHO05D004760 9.2e-74 282.7 287 61.7
A04p00500 Brassica napus HOM05D000880 ORTHO05D004760 1.6e-73 282.0 287 61.7
CBR_g19437 Chara braunii HOM05D000880 ORTHO05D004760 1.0e-72 279.3 976 28.1
Medtr8g058740 Medicago truncatula HOM05D000880 ORTHO05D004760 6.6e-72 276.6 339 46.3
TAR633G1122 Trochodendron aralioides HOM05D000880 ORTHO05D004760 1.6e-70 271.9 249 57.0
TAR636G2791 Trochodendron aralioides HOM05D000880 ORTHO05D004760 8.1e-70 269.6 286 51.7
VMungo1383G0715 Vigna mungo HOM05D000880 ORTHO05D004760 2.6e-68 264.6 207 66.2
PGR003G0015 Punica granatum HOM05D000880 ORTHO05D004760 3.4e-68 264.2 310 48.1
MSTRG.25474 Avicennia marina HOM05D000880 ORTHO05D004760 1.3e-67 262.3 225 60.9
A10p23840 Brassica napus HOM05D000880 ORTHO05D004760 8.1e-62 243.0 183 72.7
MCO13G364 Micromonas commoda HOM05D000880 ORTHO05D004760 4.0e-61 240.7 811 29.0
C07p40760 Brassica napus HOM05D000880 ORTHO05D004760 1.3e-59 235.7 160 78.8
PSO210G4167 Papaver somniferum HOM05D000880 ORTHO05D004760 2.3e-56 224.9 315 49.8
PRCOL_00002788 Prasinoderma coloniale HOM05D000880 ORTHO05D004760 4.7e-54 217.2 824 28.5
Oeu000538.1 Olea europaea HOM05D000880 ORTHO05D004760 2.1e-46 191.8 464 34.1
SEGI_12067 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 1.3e-40 172.6 191 50.8
Gorai.008G145900 Gossypium raimondii HOM05D000880 ORTHO05D004760 3.6e-38 164.5 176 56.8
Gohir.D12G134950 Gossypium hirsutum HOM05D000880 ORTHO05D004760 4.8e-38 164.1 174 58.0
SEGI_30897 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 6.2e-38 163.7 162 52.5
AT5G36980 Arabidopsis thaliana HOM05D000880 ORTHO05D004760 1.2e-36 159.5 182 57.7
CAN.G1465.7 Capsicum annuum HOM05D000880 ORTHO05D004760 1.5e-36 159.1 197 52.8
Cfa026849 Carpinus fangiana HOM05D000880 ORTHO05D004760 2.1e-30 138.7 655 26.9
SMO146G0006 Selaginella moellendorffii HOM05D000880 ORTHO05D004760 2.1e-30 138.7 235 39.1
TAR627G0201 Trochodendron aralioides HOM05D000880 ORTHO05D004760 1.4e-29 136.0 294 35.4
CAN.G1018.15 Capsicum annuum HOM05D000880 ORTHO05D004760 8.4e-27 126.7 132 50.0
Cre11.g478950 Chlamydomonas reinhardtii HOM05D000880 ORTHO05D004760 1.9e-26 125.6 967 23.2
SEGI_39037 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 2.1e-22 112.1 122 53.3
Gohir.A12G131050 Gossypium hirsutum HOM05D000880 ORTHO05D004760 3.7e-22 111.3 127 53.5
Cre11.g478966 Chlamydomonas reinhardtii HOM05D000880 ORTHO05D004760 7.9e-17 93.6 813 22.5
Actinidia21043 Actinidia chinensis HOM05D000203 ORTHO05D000135 2.2e-11 75.5 209 26.3
Rhsim01G0285700 Rhododendron simsii HOM05D000203 ORTHO05D000135 9.4e-10 70.1 248 30.6
BcaB04g17655 Brassica carinata HOM05D005969 ORTHO05D007407 2.1e-09 68.9 59 69.5
CAN.G1465.8 Capsicum annuum HOM05D000880 ORTHO05D004760 3.6e-09 68.2 82 46.3
A04p15050 Brassica napus HOM05D000880 ORTHO05D014501 1.5e-07 62.8 47 70.2
C04p15890 Brassica napus HOM05D000022 ORTHO05D010270 5.7e-07 60.8 53 69.8


User provided reference genes

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