Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G41650 Arabidopsis lyrata HOM05D002704 ORTHO05D002891 9.5e-101 370.2 185 100.0
AT4G08910 Arabidopsis thaliana HOM05D002704 ORTHO05D002891 3.2e-80 302.0 189 83.1
Carub.0006s2748 Capsella rubella HOM05D002704 ORTHO05D002891 7.1e-64 247.7 189 74.1
Sp6g08890 Schrenkiella parvula HOM05D002704 ORTHO05D002891 3.3e-61 238.8 187 70.6
CARHR259930 Cardamine hirsuta HOM05D002704 ORTHO05D002891 1.3e-60 236.9 188 67.6
Thhalv10028969m.g Eutrema salsugineum HOM05D002704 ORTHO05D002891 1.8e-51 206.5 191 62.8
THA.LOC104816761 Tarenaya hassleriana HOM05D002704 ORTHO05D002891 1.0e-22 110.9 219 39.7
BraA07t30408Z Brassica rapa HOM05D002704 ORTHO05D002891 1.5e-16 90.5 180 37.8
Thhalv10019097m.g Eutrema salsugineum HOM05D002704 ORTHO05D002891 9.4e-16 87.8 120 43.3
BcaB03g15984 Brassica carinata HOM05D002704 ORTHO05D002891 2.1e-15 86.7 154 39.0
Manes.18G067800 Manihot esculenta HOM05D002704 ORTHO05D002891 1.8e-14 83.6 131 40.5
Dinv14325 Davidia involucrata HOM05D002704 ORTHO05D002891 2.3e-14 83.2 132 40.2
BcaB02g07152 Brassica carinata HOM05D002704 ORTHO05D002891 4.0e-14 82.4 119 41.2
BcaC08g47392 Brassica carinata HOM05D002704 ORTHO05D002891 4.0e-14 82.4 159 37.1
C06p52120 Brassica napus HOM05D002704 ORTHO05D002891 4.0e-14 82.4 159 37.1
BolC6t40235H Brassica oleracea HOM05D002704 ORTHO05D002891 4.0e-14 82.4 159 37.1
A07p27670 Brassica napus HOM05D002704 ORTHO05D002891 6.8e-14 81.6 184 35.3
CARHR071630 Cardamine hirsuta HOM05D002704 ORTHO05D002891 6.8e-14 81.6 176 36.9
Duzib093G0662 Durio zibethinus HOM05D002704 ORTHO05D002891 8.8e-14 81.3 112 42.0
Thecc.08G107400 Theobroma cacao HOM05D002704 ORTHO05D002891 8.8e-14 81.3 115 43.5
Dinv44770 Davidia involucrata HOM05D002704 ORTHO05D002891 1.2e-13 80.9 131 39.7
Lalb_Chr10g0102361 Lupinus albus HOM05D002704 ORTHO05D002891 1.2e-13 80.9 135 40.0
Duzib041G0800 Durio zibethinus HOM05D002704 ORTHO05D002891 1.5e-13 80.5 129 39.5
TAR628G0302 Trochodendron aralioides HOM05D002704 ORTHO05D002891 1.5e-13 80.5 121 43.0
Lalb_Chr23g0270591 Lupinus albus HOM05D002704 ORTHO05D002891 2.0e-13 80.1 121 38.0
MBI05_g19349_MAGBIO Magnolia biondii HOM05D002704 ORTHO05D002891 2.0e-13 80.1 133 39.8
TPR.G32999 Trifolium pratense HOM05D002704 ORTHO05D002891 2.0e-13 80.1 121 42.1
Actinidia10319 Actinidia chinensis HOM05D002704 ORTHO05D002891 2.6e-13 79.7 157 35.7
AT1G78170 Arabidopsis thaliana HOM05D002704 ORTHO05D002891 3.4e-13 79.3 129 43.4
Nn5g30117 Nelumbo nucifera HOM05D002704 ORTHO05D002891 3.4e-13 79.3 138 38.4
TPR.G34534 Trifolium pratense HOM05D002704 ORTHO05D002891 3.4e-13 79.3 117 42.7
Medtr3g074450 Medicago truncatula HOM05D002704 ORTHO05D002891 4.4e-13 79.0 117 42.7
THA.LOC104809714 Tarenaya hassleriana HOM05D002704 ORTHO05D002891 4.4e-13 79.0 155 36.8
FAN08G2281 Fragaria x ananassa HOM05D002704 ORTHO05D002891 7.5e-13 78.2 150 39.3
Cc10_g07250 Coffea canephora HOM05D002704 ORTHO05D002891 9.8e-13 77.8 44 72.7
Oeu046295.1 Olea europaea HOM05D002704 ORTHO05D002891 9.8e-13 77.8 124 41.1
Glyma.06G103700 Glycine max HOM05D002704 ORTHO05D002891 1.3e-12 77.4 140 38.6
GSVIVG01009025001 Vitis vinifera HOM05D002704 ORTHO05D002891 1.3e-12 77.4 115 41.7
FvH4_5g37370 Fragaria vesca HOM05D002704 ORTHO05D002891 1.7e-12 77.0 150 38.7
FAN04G1068 Fragaria x ananassa HOM05D002704 ORTHO05D002891 1.7e-12 77.0 150 38.7
Gohir.A05G226700 Gossypium hirsutum HOM05D002704 ORTHO05D002891 1.7e-12 77.0 112 42.0
Lalb_Chr04g0253151 Lupinus albus HOM05D002704 ORTHO05D002891 1.7e-12 77.0 129 38.0
Sp5g33290 Schrenkiella parvula HOM05D002704 ORTHO05D002891 1.7e-12 77.0 183 32.8
Sc23g0000210 Simmondsia chinensis HOM05D002704 ORTHO05D002891 1.7e-12 77.0 122 43.4
Aqoxy6G00791 Aquilegia oxysepala HOM05D002704 ORTHO05D002891 2.2e-12 76.6 122 38.5
AL2G38480 Arabidopsis lyrata HOM05D002704 ORTHO05D002891 2.2e-12 76.6 132 41.7
THA.LOC104800151 Tarenaya hassleriana HOM05D002704 ORTHO05D002891 2.8e-12 76.3 167 35.9
BcaC08g45431 Brassica carinata HOM05D002704 ORTHO05D002891 4.8e-12 75.5 108 40.7
C06p30640 Brassica napus HOM05D002704 ORTHO05D002891 4.8e-12 75.5 108 40.7
BolC6t38228H Brassica oleracea HOM05D002704 ORTHO05D002891 4.8e-12 75.5 108 40.7
COL.COLO4_16406 Corchorus olitorius HOM05D002704 ORTHO05D002891 4.8e-12 75.5 52 67.3
Manes.02G153000 Manihot esculenta HOM05D002704 ORTHO05D002891 4.8e-12 75.5 118 40.7
arahy.Tifrunner.gnm1.ann1.8HDV7G Arachis hypogaea HOM05D002704 ORTHO05D002891 6.3e-12 75.1 38 78.9
arahy.Tifrunner.gnm1.ann1.AF75R2 Arachis hypogaea HOM05D002704 ORTHO05D002891 6.3e-12 75.1 38 78.9
A07p43470 Brassica napus HOM05D002704 ORTHO05D002891 8.3e-12 74.7 73 50.7
BraA07t31860Z Brassica rapa HOM05D002704 ORTHO05D002891 8.3e-12 74.7 73 50.7
Rhsim06G0082500 Rhododendron simsii HOM05D002704 ORTHO05D002891 8.3e-12 74.7 52 59.6
CSS0027836 Camellia sinensis var. sinensis HOM05D002704 ORTHO05D002891 1.1e-11 74.3 121 42.1
Ciclev10002416m.g Citrus clementina HOM05D002704 ORTHO05D002891 1.1e-11 74.3 119 39.5
FAN13G2774 Fragaria x ananassa HOM05D002704 ORTHO05D002891 1.1e-11 74.3 142 38.0
Prupe.1G516300 Prunus persica HOM05D002704 ORTHO05D002891 1.1e-11 74.3 124 40.3
Hund16912 Selenicereus undatus HOM05D002704 ORTHO05D002891 1.1e-11 74.3 47 72.3
CiPaw.08G044800 Carya illinoinensis HOM05D002704 ORTHO05D002891 1.4e-11 73.9 146 35.6
Gohir.D05G229400 Gossypium hirsutum HOM05D002704 ORTHO05D002891 1.4e-11 73.9 111 38.7
Gorai.009G237500 Gossypium raimondii HOM05D002704 ORTHO05D002891 1.4e-11 73.9 111 38.7
PGSC0003DMG400006402 Solanum tuberosum HOM05D002704 ORTHO05D002891 1.4e-11 73.9 119 41.2
FAN18G1803 Fragaria x ananassa HOM05D002704 ORTHO05D002891 1.8e-11 73.6 150 38.7
Aa31LG7G6190 Aethionema arabicum HOM05D002704 ORTHO05D002891 2.4e-11 73.2 118 42.4
Actinidia27183 Actinidia chinensis HOM05D002704 ORTHO05D002891 3.1e-11 72.8 50 60.0
Medtr5g063720 Medicago truncatula HOM05D002704 ORTHO05D002891 3.1e-11 72.8 43 69.8
Phvul.009G030900 Phaseolus vulgaris HOM05D002704 ORTHO05D002891 3.1e-11 72.8 120 40.0
QL12p036715 Quercus lobata HOM05D002704 ORTHO05D002891 3.1e-11 72.8 209 32.5
Hund26960 Selenicereus undatus HOM05D002704 ORTHO05D002891 3.1e-11 72.8 124 42.7
arahy.Tifrunner.gnm1.ann1.5JIN69 Arachis hypogaea HOM05D002704 ORTHO05D002891 4.1e-11 72.4 40 72.5
Carub.0002s2506 Capsella rubella HOM05D002704 ORTHO05D002891 5.4e-11 72.0 127 37.8
Ca_15248_v3 Cicer arietinum L. HOM05D002704 ORTHO05D002891 5.4e-11 72.0 116 40.5
Lsat_1_v5_gn_9_41620 Lactuca sativa HOM05D002704 ORTHO05D002891 5.4e-11 72.0 136 39.0
Nn1g05351 Nelumbo nucifera HOM05D002704 ORTHO05D002891 5.4e-11 72.0 43 67.4
Solyc04g074080.3 Solanum lycopersicum HOM05D002704 ORTHO05D002891 5.4e-11 72.0 139 36.7
TWI12G0499 Tripterygium wilfordii HOM05D002704 ORTHO05D002891 5.4e-11 72.0 55 60.0
CAN.G101.15 Capsicum annuum HOM05D002704 ORTHO05D002891 7.0e-11 71.6 116 41.4
Nitab4.5_0005777g0010 Nicotiana tabacum HOM05D002704 ORTHO05D002891 7.0e-11 71.6 114 41.2
Ca_05274_v3 Cicer arietinum L. HOM05D002704 ORTHO05D002891 9.1e-11 71.2 122 38.5
Hma1.2p1_0237F.1_g099460 Hydrangea macrophylla HOM05D002704 ORTHO05D002891 9.1e-11 71.2 141 36.2
Psat5g138480 Pisum sativum HOM05D002704 ORTHO05D002891 9.1e-11 71.2 120 40.8
VMungo0647G0311 Vigna mungo HOM05D002704 ORTHO05D002891 9.1e-11 71.2 37 70.3
Cpa.g.sc36.127 Carica papaya HOM05D002704 ORTHO05D002891 1.2e-10 70.9 147 36.7
Glyma.13G088900 Glycine max HOM05D002704 ORTHO05D002891 1.2e-10 70.9 117 41.0
Nitab4.5_0000232g0230 Nicotiana tabacum HOM05D002704 ORTHO05D002891 1.2e-10 70.9 115 41.7
TWI56G1046 Tripterygium wilfordii HOM05D002704 ORTHO05D002891 1.2e-10 70.9 55 60.0
Carub.0001s2180 Capsella rubella HOM05D002704 ORTHO05D002891 1.6e-10 70.5 73 46.6
RcHm_v2.0_Chr7g0239041 Rosa chinensis HOM05D002704 ORTHO05D002891 1.6e-10 70.5 46 65.2
EL10Ac1g01225 Beta vulgaris HOM05D002704 ORTHO05D002891 2.7e-10 69.7 133 36.8
TAR625G1386 Trochodendron aralioides HOM05D002704 ORTHO05D002891 2.7e-10 69.7 128 40.6
vmacro21275 Vaccinium macrocarpon HOM05D002704 ORTHO05D002891 2.7e-10 69.7 39 66.7
Zm00001eb006930 Zea mays HOM05D002704 ORTHO05D002891 2.7e-10 69.7 36 75.0
BraA02t07210Z Brassica rapa HOM05D002704 ORTHO05D002891 3.5e-10 69.3 144 38.9
Duzib116G0617 Durio zibethinus HOM05D002704 ORTHO05D002891 3.5e-10 69.3 198 31.3
Gohir.A02G076100 Gossypium hirsutum HOM05D002704 ORTHO05D002891 3.5e-10 69.3 52 61.5
VMungo1309G0496 Vigna mungo HOM05D002704 ORTHO05D002891 3.5e-10 69.3 120 40.8
Aa31LG4G8210 Aethionema arabicum HOM05D002704 ORTHO05D002891 4.5e-10 68.9 84 40.5
Oeu012923.1 Olea europaea HOM05D002704 ORTHO05D002891 4.5e-10 68.9 124 40.3
CANSAT25G0913 Cannabis sativa HOM05D002704 ORTHO05D002891 5.9e-10 68.6 38 71.1
Glyma.14G172800 Glycine max HOM05D002704 ORTHO05D002891 5.9e-10 68.6 113 39.8
MD15G1368100 Malus domestica HOM05D002704 ORTHO05D002891 5.9e-10 68.6 159 33.3
Potri.005G165300 Populus trichocarpa HOM05D002704 ORTHO05D002891 5.9e-10 68.6 211 28.9
Sc01g0000430 Simmondsia chinensis HOM05D002704 ORTHO05D002891 5.9e-10 68.6 36 77.8
Lj4C103T16 Lonicera japonica HOM05D002704 ORTHO05D002891 7.7e-10 68.2 131 38.9
Lj1g0002648 Lotus japonicus HOM05D002704 ORTHO05D002891 7.7e-10 68.2 124 35.5
Lalb_Chr11g0065441 Lupinus albus HOM05D002704 ORTHO05D002891 7.7e-10 68.2 197 35.0
Phvul.008G173300 Phaseolus vulgaris HOM05D002704 ORTHO05D002891 7.7e-10 68.2 111 40.5
AUR62038516 Chenopodium quinoa HOM05D002704 ORTHO05D002891 1.0e-09 67.8 124 36.3
Haze_22261 Corylus avellana HOM05D002704 ORTHO05D002891 1.0e-09 67.8 40 67.5
PSO447G0371 Papaver somniferum HOM05D002704 ORTHO05D002891 1.0e-09 67.8 130 33.8
A02p22080 Brassica napus HOM05D002704 ORTHO05D002891 1.3e-09 67.4 132 39.4
CARHR022620 Cardamine hirsuta HOM05D002704 ORTHO05D002891 1.3e-09 67.4 119 37.8
Eucgr.B00020 Eucalyptus grandis HOM05D002704 ORTHO05D002891 1.3e-09 67.4 154 35.7
Glyma.04G102400 Glycine max HOM05D002704 ORTHO05D002891 1.3e-09 67.4 190 34.2
PSO210G1059 Papaver somniferum HOM05D002704 ORTHO05D002891 1.3e-09 67.4 130 33.8
Peaxi162Scf00041g00165 Petunia axillaris HOM05D002704 ORTHO05D002891 1.3e-09 67.4 117 37.6
unitig_8.g4838 Utricularia gibba HOM05D002704 ORTHO05D002891 1.3e-09 67.4 126 36.5
A01p24680 Brassica napus HOM05D002704 ORTHO05D002891 1.7e-09 67.0 123 39.8
BraA01t02380Z Brassica rapa HOM05D002704 ORTHO05D002891 1.7e-09 67.0 123 39.8
AUR62027750 Chenopodium quinoa HOM05D002704 ORTHO05D002891 1.7e-09 67.0 129 34.9
Gohir.D02G083400 Gossypium hirsutum HOM05D002704 ORTHO05D002891 1.7e-09 67.0 52 59.6
MD08G1182400 Malus domestica HOM05D002704 ORTHO05D002891 1.7e-09 67.0 48 60.4
Sabra02G0075700 Salix brachista HOM05D002704 ORTHO05D002891 1.7e-09 67.0 53 58.5
Ah.05g170030 Amaranthus hybridus HOM05D002704 ORTHO05D002891 2.3e-09 66.6 135 34.1
BcaB05g25124 Brassica carinata HOM05D002704 ORTHO05D002891 2.3e-09 66.6 143 39.2
CsaV3_2G029650 Cucumis sativus L. HOM05D002704 ORTHO05D002891 2.9e-09 66.2 134 32.8
Atru.chr13.1197 Acer truncatum HOM05D002704 ORTHO05D002891 3.8e-09 65.9 111 38.7
MELO3C011023.2 Cucumis melo HOM05D002704 ORTHO05D002891 3.8e-09 65.9 37 78.4
Zm00001eb401340 Zea mays HOM05D002704 ORTHO05D002891 3.8e-09 65.9 59 50.8
BolC2t09563H Brassica oleracea HOM05D002704 ORTHO05D002891 5.0e-09 65.5 122 41.0
Nitab4.5_0000421g0060 Nicotiana tabacum HOM05D002704 ORTHO05D002891 5.0e-09 65.5 118 36.4
CiPaw.07G180300 Carya illinoinensis HOM05D002704 ORTHO05D002891 6.5e-09 65.1 195 34.4
ClCG08G011070 Citrullus lanatus HOM05D002704 ORTHO05D002891 6.5e-09 65.1 115 33.9
Thhalv10008815m.g Eutrema salsugineum HOM05D002704 ORTHO05D002891 8.6e-09 64.7 125 38.4
BraA07t29205Z Brassica rapa HOM05D002704 ORTHO05D002891 1.1e-08 64.3 43 65.1
DCAR_029361 Daucus carota HOM05D002704 ORTHO05D002891 1.5e-08 63.9 107 38.3
Eucgr.F02409 Eucalyptus grandis HOM05D002704 ORTHO05D002891 1.5e-08 63.9 152 34.2
Gorai.005G094000 Gossypium raimondii HOM05D002704 ORTHO05D002891 1.5e-08 63.9 52 57.7
BcaB03g14223 Brassica carinata HOM05D002704 ORTHO05D002891 2.5e-08 63.2 127 37.0
BcaB03g14224 Brassica carinata HOM05D002704 ORTHO05D002891 2.5e-08 63.2 127 37.0
Potri.002G096100 Populus trichocarpa HOM05D002704 ORTHO05D002891 2.5e-08 63.2 38 63.2
MELO3C003450.2 Cucumis melo HOM05D002704 ORTHO05D002891 4.2e-08 62.4 36 69.4
HPP92_011168 Vanilla planifolia HOM05D002704 ORTHO05D002891 4.2e-08 62.4 152 34.9
PSO781G0307 Papaver somniferum HOM05D002704 ORTHO05D002891 5.5e-08 62.0 165 30.9
Os03g0191200 Oryza sativa ssp. japonica HOM05D002704 ORTHO05D002891 7.2e-08 61.6 41 61.0
PSO541G2691 Papaver somniferum HOM05D002704 ORTHO05D002891 9.5e-08 61.2 162 30.9
Psat2g072240 Pisum sativum HOM05D002704 ORTHO05D002891 9.5e-08 61.2 181 28.2
HPP92_011170 Vanilla planifolia HOM05D002704 ORTHO05D002891 9.5e-08 61.2 164 33.5
CDE10G0994 Ceratophyllum demersum HOM05D002704 ORTHO05D002891 1.2e-07 60.8 43 62.8
HanXRQChr15g0491861 Helianthus annuus HOM05D002704 ORTHO05D002891 1.2e-07 60.8 203 28.6
Aqoxy2G04081 Aquilegia oxysepala HOM05D002704 ORTHO05D002891 1.6e-07 60.5 97 36.1
Aqoxy6G02333 Aquilegia oxysepala HOM05D002704 ORTHO05D002891 1.6e-07 60.5 97 36.1
MSTRG.24460 Avicennia marina HOM05D002704 ORTHO05D002891 2.1e-07 60.1 120 35.0
Sp1g19760 Schrenkiella parvula HOM05D002704 ORTHO05D002891 2.1e-07 60.1 173 31.8
Sed0023198 Sechium edule HOM05D002704 ORTHO05D002891 2.1e-07 60.1 32 71.9
TAR381G1126 Trochodendron aralioides HOM05D002704 ORTHO05D002891 2.1e-07 60.1 135 38.5
CsaV3_3G048710 Cucumis sativus L. HOM05D002704 ORTHO05D002891 2.8e-07 59.7 146 32.9
BcaB07g32247 Brassica carinata HOM05D002704 ORTHO05D002891 3.6e-07 59.3 179 33.5
Nitab4.5_0002098g0040 Nicotiana tabacum HOM05D002704 ORTHO05D002891 3.6e-07 59.3 173 31.8
Sed0020547 Sechium edule HOM05D002704 ORTHO05D002891 3.6e-07 59.3 127 34.6
CDE04G0076 Ceratophyllum demersum HOM05D002704 ORTHO05D002891 4.7e-07 58.9 111 35.1
BolC5t30835H Brassica oleracea HOM05D002704 ORTHO05D002891 6.1e-07 58.5 188 34.0
Migut.N02898 Erythranthe guttata HOM05D002704 ORTHO05D002891 6.1e-07 58.5 45 60.0
MBI08_g28697_MAGBIO Magnolia biondii HOM05D002704 ORTHO05D002891 6.1e-07 58.5 30 73.3
A09p42520 Brassica napus HOM05D002704 ORTHO05D002891 8.0e-07 58.2 178 34.8
BraA09t39728Z Brassica rapa HOM05D002704 ORTHO05D002891 8.0e-07 58.2 178 34.8
unitig_578.g16200 Utricularia gibba HOM05D002704 ORTHO05D002891 8.0e-07 58.2 201 29.9
AT1G22250 Arabidopsis thaliana HOM05D002704 ORTHO05D002891 1.8e-06 57.0 195 30.3
Sed0024849 Sechium edule HOM05D002704 ORTHO05D002891 1.8e-06 57.0 162 32.1
MSTRG.22153 Avicennia marina HOM05D002704 ORTHO05D002891 2.3e-06 56.6 189 31.7
BcaC06g34946 Brassica carinata HOM05D002704 ORTHO05D002891 2.3e-06 56.6 193 31.6
C07p21480 Brassica napus HOM05D002704 ORTHO05D002891 2.3e-06 56.6 193 31.6
BolC7t42674H Brassica oleracea HOM05D002704 ORTHO05D002891 2.3e-06 56.6 193 31.6
TAR633G1006 Trochodendron aralioides HOM05D002704 ORTHO05D002891 2.3e-06 56.6 121 34.7
BcaC05g26153 Brassica carinata HOM05D002704 ORTHO05D002891 4.0e-06 55.8 168 35.7
Os11g0294400 Oryza sativa ssp. japonica HOM05D002704 ORTHO05D002891 4.0e-06 55.8 38 63.2
CDE08G0150 Ceratophyllum demersum HOM05D002704 ORTHO05D002891 5.2e-06 55.5 33 66.7
C05p21380 Brassica napus HOM05D002704 ORTHO05D002891 8.8e-06 54.7 176 34.1
ClCG11G015290 Citrullus lanatus HOM05D002704 ORTHO05D002891 8.8e-06 54.7 137 33.6
MBI11_g35640_MAGBIO Magnolia biondii HOM05D002704 ORTHO05D002891 8.8e-06 54.7 46 52.2


User provided reference genes

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