Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G37270 Arabidopsis lyrata HOM05D008662 ORTHO05D010843 1.4e-167 592.8 281 100.0
AT5G25475 Arabidopsis thaliana HOM05D008662 ORTHO05D010843 4.3e-145 518.1 281 88.6
Carub.0006s2333 Capsella rubella HOM05D008662 ORTHO05D010843 6.7e-122 441.0 279 74.6
AT5G25470 Arabidopsis thaliana HOM05D008662 ORTHO05D010843 2.3e-114 416.0 282 72.3
AL6G37260 Arabidopsis lyrata HOM05D008662 ORTHO05D010843 2.0e-110 402.9 282 70.9
Carub.0006s2332 Capsella rubella HOM05D008662 ORTHO05D010843 1.6e-107 393.3 281 69.4
Sp3g16060 Schrenkiella parvula HOM05D008662 ORTHO05D010843 2.2e-93 346.3 280 62.5
CARHR187920 Cardamine hirsuta HOM05D008662 ORTHO05D010843 1.4e-90 337.0 283 61.8
Thhalv10004752m.g Eutrema salsugineum HOM05D008662 ORTHO05D010843 7.7e-86 321.2 278 59.4
C03p49300 Brassica napus HOM05D008662 ORTHO05D010843 2.0e-81 306.6 276 54.7
BcaB04g18973 Brassica carinata HOM05D008662 ORTHO05D010843 7.5e-81 304.7 270 56.3
BolC3t17219H Brassica oleracea HOM05D008662 ORTHO05D010843 9.7e-81 304.3 288 53.5
Sp2g22060 Schrenkiella parvula HOM05D008662 ORTHO05D010843 9.7e-81 304.3 282 55.0
BcaC01g03721 Brassica carinata HOM05D008662 ORTHO05D010843 1.1e-79 300.8 286 53.1
A03p40460 Brassica napus HOM05D008662 ORTHO05D010843 1.1e-79 300.8 278 54.7
BraA03t13204Z Brassica rapa HOM05D008662 ORTHO05D010843 1.4e-79 300.4 278 54.3
BraA02t08937Z Brassica rapa HOM05D008662 ORTHO05D010843 3.1e-79 299.3 282 55.0
BcaC09g48756 Brassica carinata HOM05D008662 ORTHO05D010843 7.0e-79 298.1 267 56.2
C01p46230 Brassica napus HOM05D008662 ORTHO05D010843 7.0e-79 298.1 267 56.2
C02p59500 Brassica napus HOM05D008662 ORTHO05D010843 7.0e-79 298.1 282 54.3
BolC1t04584H Brassica oleracea HOM05D008662 ORTHO05D010843 7.0e-79 298.1 267 56.2
BcaC05g28732 Brassica carinata HOM05D008662 ORTHO05D010843 1.2e-78 297.4 262 58.8
A02p39720 Brassica napus HOM05D008662 ORTHO05D010843 1.2e-78 297.4 282 54.6
A06p36170 Brassica napus HOM05D008662 ORTHO05D010843 1.2e-78 297.4 282 54.3
BolC2t12013H Brassica oleracea HOM05D008662 ORTHO05D010843 1.2e-78 297.4 282 55.0
C05p48350 Brassica napus HOM05D008662 ORTHO05D010843 2.0e-78 296.6 262 58.8
BraA06t26539Z Brassica rapa HOM05D008662 ORTHO05D010843 2.0e-78 296.6 285 54.7
BraA05t22018Z Brassica rapa HOM05D008662 ORTHO05D010843 3.5e-78 295.8 267 56.6
C07p42350 Brassica napus HOM05D008662 ORTHO05D010843 5.9e-78 295.0 290 54.1
BraA01t03711Z Brassica rapa HOM05D008662 ORTHO05D010843 7.7e-78 294.7 267 55.8
A05p31860 Brassica napus HOM05D008662 ORTHO05D010843 2.2e-77 293.1 262 58.0
BolC7t44763H Brassica oleracea HOM05D005914 ORTHO05D007361 2.9e-77 292.7 291 54.3
A01p36470 Brassica napus HOM05D008662 ORTHO05D010843 5.0e-77 292.0 267 55.1
Thhalv10021356m.g Eutrema salsugineum HOM05D008662 ORTHO05D010843 1.1e-76 290.8 267 54.3
BcaB06g25856 Brassica carinata HOM05D008662 ORTHO05D010843 1.6e-75 287.0 269 54.3
BraA09t36259Z Brassica rapa HOM05D008662 ORTHO05D010843 2.3e-74 283.1 315 49.5
BolC5t33569H Brassica oleracea HOM05D008662 ORTHO05D010843 5.2e-74 282.0 301 50.8
BcaB04g20805 Brassica carinata HOM05D008662 ORTHO05D010843 4.5e-70 268.9 246 54.9
Aa31LG11G4850 Aethionema arabicum HOM05D005914 ORTHO05D007361 8.9e-66 254.6 282 51.1
BcaB07g32200 Brassica carinata HOM05D008662 ORTHO05D010843 5.6e-44 182.2 214 49.1
CARHR000030 Cardamine hirsuta HOM05D008662 ORTHO05D010843 1.2e-43 181.0 175 53.1
BcaB04g19788 Brassica carinata HOM05D008662 ORTHO05D010843 2.8e-35 153.3 135 56.3
CARHR187960 Cardamine hirsuta HOM05D008662 ORTHO05D010843 4.0e-34 149.4 94 71.3
BcaB04g20807 Brassica carinata HOM05D008662 ORTHO05D010843 6.4e-32 142.1 125 52.0
BcaNung02264 Brassica carinata HOM05D008662 ORTHO05D010843 1.4e-31 141.0 116 56.9
C07p42410 Brassica napus HOM05D008662 ORTHO05D010843 4.1e-31 139.4 116 56.0
BolC7t44768H Brassica oleracea HOM05D008662 ORTHO05D010843 4.1e-31 139.4 116 56.0
CARHR292350 Cardamine hirsuta HOM05D008662 ORTHO05D010843 2.8e-19 100.1 63 69.8
THA.LOC104807340 Tarenaya hassleriana HOM05D006628 ORTHO05D000088 4.8e-19 99.4 282 27.3
Aa31LG7G14390 Aethionema arabicum HOM05D006628 ORTHO05D000088 7.1e-15 85.5 237 25.7
C07p60560 Brassica napus HOM05D006628 ORTHO05D000088 3.5e-14 83.2 116 37.9
BolC7t46487H Brassica oleracea HOM05D006628 ORTHO05D000088 3.5e-14 83.2 116 37.9
THA.LOC104807272 Tarenaya hassleriana HOM05D006628 ORTHO05D000088 6.0e-14 82.4 262 24.8
A03p62870 Brassica napus HOM05D006628 ORTHO05D000088 1.3e-13 81.3 118 36.4
BraA03t15364Z Brassica rapa HOM05D006628 ORTHO05D000088 1.3e-13 81.3 118 36.4
THA.LOC104819596 Tarenaya hassleriana HOM05D007600 ORTHO05D009132 1.3e-13 81.3 143 34.3
Aa31LG5G11590 Aethionema arabicum HOM05D006628 ORTHO05D000088 3.9e-13 79.7 237 25.7
Sp7g27330 Schrenkiella parvula HOM05D006628 ORTHO05D000088 5.1e-13 79.3 279 24.4
C01p16350 Brassica napus HOM05D006628 ORTHO05D000088 1.1e-12 78.2 121 39.7
BolC1t01586H Brassica oleracea HOM05D006628 ORTHO05D000088 1.5e-12 77.8 121 39.7
BcaB05g22370 Brassica carinata HOM05D006628 ORTHO05D000088 2.5e-12 77.0 270 23.0
Thhalv10025812m.g Eutrema salsugineum HOM05D006628 ORTHO05D000088 5.6e-12 75.9 109 38.5
A02p08260 Brassica napus HOM05D006628 ORTHO05D000088 7.4e-12 75.5 272 21.0
Sp6g19410 Schrenkiella parvula HOM05D006628 ORTHO05D000088 7.4e-12 75.5 274 22.6
BraA01t00809Z Brassica rapa HOM05D006628 ORTHO05D000088 1.3e-11 74.7 185 28.1
BraA02t05898Z Brassica rapa HOM05D006628 ORTHO05D000088 1.3e-11 74.7 272 21.0
BcaC03g16172 Brassica carinata HOM05D006628 ORTHO05D000088 1.6e-11 74.3 108 39.8
A01p08580 Brassica napus HOM05D000106 ORTHO05D000160 1.6e-11 74.3 185 28.1
A02p24960 Brassica napus HOM05D006628 ORTHO05D000088 1.6e-11 74.3 108 39.8
C02p39080 Brassica napus HOM05D006628 ORTHO05D000088 1.6e-11 74.3 108 39.8
BolC2t09918H Brassica oleracea HOM05D006628 ORTHO05D000088 1.6e-11 74.3 108 39.8
BraA02t07486Z Brassica rapa HOM05D006628 ORTHO05D000088 1.6e-11 74.3 108 39.8
Thhalv10028696m.g Eutrema salsugineum HOM05D006628 ORTHO05D000088 2.1e-11 73.9 146 32.2
BraA03t13149Z Brassica rapa HOM05D007600 ORTHO05D009132 4.8e-11 72.8 244 23.0
BolC1t00991H Brassica oleracea HOM05D006628 ORTHO05D000088 8.1e-11 72.0 188 28.7
Thhalv10026054m.g Eutrema salsugineum HOM05D006628 ORTHO05D000088 8.1e-11 72.0 255 25.5
Sp6g02680 Schrenkiella parvula HOM05D006628 ORTHO05D000088 8.1e-11 72.0 108 37.0
BcaC09g51730 Brassica carinata HOM05D006628 ORTHO05D000088 1.4e-10 71.2 186 29.6
BcaNung06129 Brassica carinata HOM05D000765 ORTHO05D000613 1.4e-10 71.2 110 35.5
CARHR242370 Cardamine hirsuta HOM05D006628 ORTHO05D000088 1.4e-10 71.2 108 37.0
AT5G57720 Arabidopsis thaliana HOM05D006628 ORTHO05D000088 2.4e-10 70.5 277 22.7
BcaB05g23317 Brassica carinata HOM05D007600 ORTHO05D009132 2.4e-10 70.5 120 30.0
C01p10050 Brassica napus HOM05D006628 ORTHO05D000088 2.4e-10 70.5 187 28.3
Carub.0006s1619 Capsella rubella HOM05D007600 ORTHO05D009132 3.1e-10 70.1 120 31.7
AL6G29100 Arabidopsis lyrata HOM05D007600 ORTHO05D009132 4.0e-10 69.7 120 30.8
AL8G33760 Arabidopsis lyrata HOM05D006628 ORTHO05D000088 4.0e-10 69.7 275 21.5
AT4G34400 Arabidopsis thaliana HOM05D006628 ORTHO05D000088 4.0e-10 69.7 162 29.0
BcaB05g23662 Brassica carinata HOM05D006628 ORTHO05D000088 4.0e-10 69.7 108 37.0
Sp1g09320 Schrenkiella parvula HOM05D007600 ORTHO05D009132 4.0e-10 69.7 95 33.7
C02p13950 Brassica napus HOM05D006628 ORTHO05D000088 5.3e-10 69.3 117 29.9
BcaC03g14130 Brassica carinata HOM05D006628 ORTHO05D000088 6.9e-10 68.9 117 29.9
BolC2t07512H Brassica oleracea HOM05D006628 ORTHO05D000088 6.9e-10 68.9 117 29.9
Thhalv10014229m.g Eutrema salsugineum HOM05D006628 ORTHO05D000088 6.9e-10 68.9 116 29.3
BcaB06g25793 Brassica carinata HOM05D007600 ORTHO05D009132 9.0e-10 68.6 136 28.7
BcaNung01328 Brassica carinata HOM05D006628 ORTHO05D000088 9.0e-10 68.6 117 32.5
BraA04t18782Z Brassica rapa HOM05D007600 ORTHO05D009132 9.0e-10 68.6 270 26.3
A01p08840 Brassica napus HOM05D006628 ORTHO05D000088 1.2e-09 68.2 188 28.7
A04p33230 Brassica napus HOM05D007600 ORTHO05D009132 1.2e-09 68.2 278 26.3
C04p70920 Brassica napus HOM05D007600 ORTHO05D009132 1.2e-09 68.2 115 34.8
BolC4t28592H Brassica oleracea HOM05D007600 ORTHO05D009132 1.2e-09 68.2 115 34.8
BraA01t00831Z Brassica rapa HOM05D006628 ORTHO05D000088 1.2e-09 68.2 188 28.7
BraA01t01293Z Brassica rapa HOM05D006628 ORTHO05D000088 1.2e-09 68.2 110 39.1
AT5G18000 Arabidopsis thaliana HOM05D007600 ORTHO05D009132 2.0e-09 67.4 104 33.7
BolC2t06864H Brassica oleracea HOM05D007600 ORTHO05D009132 2.0e-09 67.4 120 28.3
AL6G29290 Arabidopsis lyrata HOM05D007600 ORTHO05D009132 2.6e-09 67.0 182 29.7
BcaC03g13563 Brassica carinata HOM05D007600 ORTHO05D009132 2.6e-09 67.0 120 28.3
C02p09570 Brassica napus HOM05D007600 ORTHO05D009132 2.6e-09 67.0 120 28.3
BcaC09g51706 Brassica carinata HOM05D006628 ORTHO05D000088 3.4e-09 66.6 262 24.8
BcaB06g25788 Brassica carinata HOM05D007600 ORTHO05D009132 4.5e-09 66.2 233 25.3
A02p04630 Brassica napus HOM05D007600 ORTHO05D009132 4.5e-09 66.2 121 28.1
A08p33850 Brassica napus HOM05D007600 ORTHO05D009132 4.5e-09 66.2 251 25.5
BolC2t07514H Brassica oleracea HOM05D006628 ORTHO05D000088 4.5e-09 66.2 268 20.9
BraA02t05424Z Brassica rapa HOM05D007600 ORTHO05D009132 4.5e-09 66.2 120 28.3
BraA08t35300Z Brassica rapa HOM05D007600 ORTHO05D009132 4.5e-09 66.2 251 25.5
Thhalv10015617m.g Eutrema salsugineum HOM05D007600 ORTHO05D009132 4.5e-09 66.2 270 24.1
Sp3g15230 Schrenkiella parvula HOM05D007600 ORTHO05D009132 4.5e-09 66.2 109 33.9
BcaC01g03796 Brassica carinata HOM05D007600 ORTHO05D009132 9.9e-09 65.1 233 24.9
C03p48540 Brassica napus HOM05D007600 ORTHO05D009132 9.9e-09 65.1 233 24.9
BolC3t17132H Brassica oleracea HOM05D007600 ORTHO05D009132 9.9e-09 65.1 233 24.9
Carub.0007s0593 Capsella rubella HOM05D006628 ORTHO05D000088 9.9e-09 65.1 162 29.6
BcaC07g38617 Brassica carinata HOM05D007600 ORTHO05D009132 1.3e-08 64.7 102 31.4
A02p08270 Brassica napus HOM05D006628 ORTHO05D000088 1.7e-08 64.3 112 27.7
BraA02t05899Z Brassica rapa HOM05D006628 ORTHO05D000088 1.7e-08 64.3 112 27.7
Duzib248G0282 Durio zibethinus HOM05D000823 ORTHO05D009132 1.7e-08 64.3 275 26.2
CARHR271470 Cardamine hirsuta HOM05D006628 ORTHO05D000088 2.2e-08 63.9 250 21.2
Migut.J01193 Erythranthe guttata HOM05D008110 ORTHO05D000088 2.2e-08 63.9 308 24.7
BcaB04g18919 Brassica carinata HOM05D007600 ORTHO05D009132 2.9e-08 63.5 90 33.3
Carub.0008s1823 Capsella rubella HOM05D006628 ORTHO05D000088 2.9e-08 63.5 285 21.8
CARHR195070 Cardamine hirsuta HOM05D007600 ORTHO05D009132 2.9e-08 63.5 120 29.2
C09p58890 Brassica napus HOM05D007600 ORTHO05D009132 3.8e-08 63.2 121 29.8
Carub.0006s1638 Capsella rubella HOM05D007600 ORTHO05D009132 3.8e-08 63.2 120 30.8
BcaC07g38580 Brassica carinata HOM05D007600 ORTHO05D009132 4.9e-08 62.8 95 30.5
A03p40010 Brassica napus HOM05D007600 ORTHO05D009132 4.9e-08 62.8 234 24.4
C08p13860 Brassica napus HOM05D007600 ORTHO05D009132 6.4e-08 62.4 95 30.5
BolC8t49021H Brassica oleracea HOM05D007600 ORTHO05D009132 6.4e-08 62.4 95 30.5
Aa31LG10G8440 Aethionema arabicum HOM05D006628 ORTHO05D000088 8.4e-08 62.0 205 27.3
Aa31LG11G11510 Aethionema arabicum HOM05D007600 ORTHO05D009132 8.4e-08 62.0 88 33.0
CARHR092260 Cardamine hirsuta HOM05D007600 ORTHO05D009132 8.4e-08 62.0 90 32.2
Sp6g26220 Schrenkiella parvula HOM05D007600 ORTHO05D009132 8.4e-08 62.0 120 29.2
AT2G35310 Arabidopsis thaliana HOM05D007600 ORTHO05D009132 1.1e-07 61.6 249 24.9
BcaB06g25789 Brassica carinata HOM05D007600 ORTHO05D009132 1.1e-07 61.6 114 29.8
BcaC01g03795 Brassica carinata HOM05D007600 ORTHO05D009132 1.1e-07 61.6 114 29.8
A03p40020 Brassica napus HOM05D007600 ORTHO05D009132 1.1e-07 61.6 114 29.8
C03p48550 Brassica napus HOM05D007600 ORTHO05D009132 1.1e-07 61.6 114 29.8
BolC3t17133H Brassica oleracea HOM05D007600 ORTHO05D009132 1.1e-07 61.6 114 29.8
BraA03t13150Z Brassica rapa HOM05D007600 ORTHO05D009132 1.1e-07 61.6 114 29.8
A05p32720 Brassica napus HOM05D007600 ORTHO05D009132 1.4e-07 61.2 90 31.1
CARHR080680 Cardamine hirsuta HOM05D006628 ORTHO05D000088 1.9e-07 60.8 114 28.1
AL457U10020 Arabidopsis lyrata HOM05D007600 ORTHO05D009132 2.4e-07 60.5 96 32.3
BcaB04g18922 Brassica carinata HOM05D007600 ORTHO05D009132 2.4e-07 60.5 127 29.9
Carub.0006s0819 Capsella rubella HOM05D007600 ORTHO05D009132 2.4e-07 60.5 260 25.0
Aa31LG1G12320 Aethionema arabicum HOM05D009243 ORTHO05D011355 3.2e-07 60.1 118 32.2
BraA05t22094Z Brassica rapa HOM05D007600 ORTHO05D009132 3.2e-07 60.1 89 31.5
AL7G16870 Arabidopsis lyrata HOM05D006628 ORTHO05D000088 4.2e-07 59.7 102 33.3
Thhalv10000999m.g Eutrema salsugineum HOM05D006628 ORTHO05D000088 4.2e-07 59.7 198 24.2
A10p21410 Brassica napus HOM05D007600 ORTHO05D009132 5.5e-07 59.3 121 28.1
BraA04t18175Z Brassica rapa HOM05D007600 ORTHO05D009132 5.5e-07 59.3 250 24.0
Carub.0003s2950 Capsella rubella HOM05D007600 ORTHO05D009132 5.5e-07 59.3 90 33.3
Thhalv10010633m.g Eutrema salsugineum HOM05D006628 ORTHO05D000088 5.5e-07 59.3 221 21.3
Thhalv10014488m.g Eutrema salsugineum HOM05D009243 ORTHO05D011355 7.1e-07 58.9 115 29.6
C01p10360 Brassica napus HOM05D006628 ORTHO05D000088 9.3e-07 58.5 148 30.4
BolC4t27889H Brassica oleracea HOM05D007600 ORTHO05D009132 9.3e-07 58.5 246 25.2
BcaB08g36132 Brassica carinata HOM05D006628 ORTHO05D000088 1.2e-06 58.2 140 28.6
CARHR106010 Cardamine hirsuta HOM05D007600 ORTHO05D009132 1.2e-06 58.2 90 32.2
AT3G06160 Arabidopsis thaliana HOM05D006628 ORTHO05D000088 1.6e-06 57.8 293 21.5
BolC5t33688H Brassica oleracea HOM05D007600 ORTHO05D009132 1.6e-06 57.8 90 31.1
AT5G18090 Arabidopsis thaliana HOM05D007600 ORTHO05D009132 2.1e-06 57.4 115 28.7
BcaB08g36708 Brassica carinata HOM05D007600 ORTHO05D009132 2.1e-06 57.4 104 30.8
TWI75G0037 Tripterygium wilfordii HOM05D000823 ORTHO05D000088 2.1e-06 57.4 293 21.2
CARHR291980 Cardamine hirsuta HOM05D007600 ORTHO05D009132 3.5e-06 56.6 93 29.0
BcaC04g18726 Brassica carinata HOM05D007600 ORTHO05D009132 7.9e-06 55.5 122 28.7
BolC9t58734H Brassica oleracea HOM05D007600 ORTHO05D009132 7.9e-06 55.5 122 28.7
Medtr1g021270 Medicago truncatula HOM05D000823 ORTHO05D000088 7.9e-06 55.5 105 34.3


User provided reference genes

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