Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G35880 Arabidopsis lyrata HOM05D004333 ORTHO05D005363 0.0e+00 4699.0 2380 100.0
AT5G24350 Arabidopsis thaliana HOM05D004333 ORTHO05D005363 0.0e+00 4419.4 2380 93.7
CARHR189090 Cardamine hirsuta HOM05D004333 ORTHO05D005363 0.0e+00 4229.5 2380 90.2
Sp2g22970 Schrenkiella parvula HOM05D004333 ORTHO05D005363 0.0e+00 4144.0 2380 88.1
Thhalv10003502m.g Eutrema salsugineum HOM05D004333 ORTHO05D005363 0.0e+00 4128.9 2383 88.0
C07p43390 Brassica napus HOM05D004333 ORTHO05D005363 0.0e+00 4048.8 2386 86.5
A06p35170 Brassica napus HOM05D004333 ORTHO05D005363 0.0e+00 4042.3 2384 86.4
BraA06t26437Z Brassica rapa HOM05D004333 ORTHO05D005363 0.0e+00 4030.7 2407 85.6
BolC7t44866H Brassica oleracea HOM05D004333 ORTHO05D005363 0.0e+00 4028.0 2413 85.5
BcaNung01227 Brassica carinata HOM05D004333 ORTHO05D005363 0.0e+00 3959.1 2341 85.9
Aa31LG11G3630 Aethionema arabicum HOM05D004333 ORTHO05D005363 0.0e+00 3810.4 2369 81.6
THA.LOC104798907 Tarenaya hassleriana HOM05D004333 ORTHO05D005363 0.0e+00 3431.7 2386 73.0
Carub.0006s2218 Capsella rubella HOM05D004333 ORTHO05D005363 0.0e+00 2855.9 1612 90.9
Thecc.03G204400 Theobroma cacao HOM05D004333 ORTHO05D005363 0.0e+00 2674.0 2440 56.7
Manes.01G037200 Manihot esculenta HOM05D004333 ORTHO05D005363 0.0e+00 2635.1 2428 56.6
Dinv32109 Davidia involucrata HOM05D004333 ORTHO05D005363 0.0e+00 2609.3 2451 55.5
QL11p010725 Quercus lobata HOM05D004333 ORTHO05D005363 0.0e+00 2608.9 2444 55.9
Sabra12G0012900 Salix brachista HOM05D004333 ORTHO05D005363 0.0e+00 2607.8 2421 56.3
Cfa016195 Carpinus fangiana HOM05D004333 ORTHO05D005363 0.0e+00 2598.5 2428 56.2
Haze_00260 Corylus avellana HOM05D004333 ORTHO05D005363 0.0e+00 2597.0 2462 55.9
Potri.012G020000 Populus trichocarpa HOM05D004333 ORTHO05D005363 0.0e+00 2584.3 2429 56.1
Sabra15G0006500 Salix brachista HOM05D004333 ORTHO05D005363 0.0e+00 2578.5 2437 55.4
TAR633G0098 Trochodendron aralioides HOM05D004333 ORTHO05D005363 0.0e+00 2576.2 2439 54.5
MD07G1295800 Malus domestica HOM05D004333 ORTHO05D005363 0.0e+00 2569.7 2417 55.3
Potri.015G008500 Populus trichocarpa HOM05D004333 ORTHO05D005363 0.0e+00 2561.2 2436 54.8
TWI39G1232 Tripterygium wilfordii HOM05D004333 ORTHO05D005363 0.0e+00 2559.6 2419 54.9
Gohir.D12G248500 Gossypium hirsutum HOM05D004333 ORTHO05D005363 0.0e+00 2558.9 2442 55.1
Gorai.008G266500 Gossypium raimondii HOM05D004333 ORTHO05D005363 0.0e+00 2556.6 2442 55.1
Prupe.2G315300 Prunus persica HOM05D004333 ORTHO05D005363 0.0e+00 2552.7 2439 55.0
CiPaw.05G200800 Carya illinoinensis HOM05D004333 ORTHO05D005363 0.0e+00 2545.0 2447 55.2
Gohir.A12G247800 Gossypium hirsutum HOM05D004333 ORTHO05D005363 0.0e+00 2545.0 2448 54.8
Ciclev10000006m.g Citrus clementina HOM05D004333 ORTHO05D005363 0.0e+00 2533.8 2423 54.9
RcHm_v2.0_Chr1g0381961 Rosa chinensis HOM05D004333 ORTHO05D005363 0.0e+00 2530.4 2434 53.9
FvH4_7g32380 Fragaria vesca HOM05D004333 ORTHO05D005363 0.0e+00 2520.3 2430 53.4
FAN06G4186 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 2506.9 2464 52.6
Actinidia08674 Actinidia chinensis HOM05D004333 ORTHO05D005363 0.0e+00 2490.3 2437 53.2
MD01G1225300 Malus domestica HOM05D004333 ORTHO05D005363 0.0e+00 2489.1 2413 54.4
FAN03G1314 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 2487.6 2464 52.4
Lj1C1024G7 Lonicera japonica HOM05D004333 ORTHO05D005363 0.0e+00 2485.7 2468 53.1
FAN10G1078 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 2484.9 2464 52.2
FAN10G0319 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 2466.4 2464 51.9
Lj1g0003347 Lotus japonicus HOM05D004333 ORTHO05D005363 0.0e+00 2444.5 2428 52.9
CANSAT21G1061 Cannabis sativa HOM05D004333 ORTHO05D005363 0.0e+00 2434.1 2425 52.6
Glyma.04G232700 Glycine max HOM05D004333 ORTHO05D005363 0.0e+00 2429.4 2397 53.5
Phvul.009G048100 Phaseolus vulgaris HOM05D004333 ORTHO05D005363 0.0e+00 2427.1 2434 53.1
Ca_16734_v3 Cicer arietinum L. HOM05D004333 ORTHO05D005363 0.0e+00 2419.4 2426 52.6
TPR.G33633 Trifolium pratense HOM05D004333 ORTHO05D005363 0.0e+00 2415.6 2434 52.5
Glyma.06G132300 Glycine max HOM05D004333 ORTHO05D005363 0.0e+00 2412.5 2420 52.9
arahy.Tifrunner.gnm1.ann1.F5KWPZ Arachis hypogaea HOM05D004333 ORTHO05D005363 0.0e+00 2400.2 2425 52.0
Atru.chr12.2311 Acer truncatum HOM05D004333 ORTHO05D005363 0.0e+00 2398.6 2097 58.8
Medtr3g091940 Medicago truncatula HOM05D004333 ORTHO05D005363 0.0e+00 2391.7 2422 51.9
arahy.Tifrunner.gnm1.ann1.SMAV3X Arachis hypogaea HOM05D004333 ORTHO05D005363 0.0e+00 2390.9 2462 51.1
Nn7g38041 Nelumbo nucifera HOM05D004333 ORTHO05D005363 0.0e+00 2378.2 2431 51.0
vmacro06413 Vaccinium macrocarpon HOM05D004333 ORTHO05D005363 0.0e+00 2377.1 2377 52.2
Lalb_Chr08g0240011 Lupinus albus HOM05D004333 ORTHO05D005363 0.0e+00 2370.1 2441 51.7
FAN01G1860 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 2357.0 2457 50.3
FAN20G1934 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 2352.0 2457 50.3
ClCG03G011440 Citrullus lanatus HOM05D004333 ORTHO05D005363 0.0e+00 2343.9 2439 51.5
Rhsim03G0212200 Rhododendron simsii HOM05D004333 ORTHO05D005363 0.0e+00 2340.1 2421 51.1
Sopen03g022440 Solanum pennellii HOM05D004333 ORTHO05D005363 0.0e+00 2326.2 2422 50.7
Migut.F00177 Erythranthe guttata HOM05D004333 ORTHO05D005363 0.0e+00 2320.4 2423 50.6
Sed0018682 Sechium edule HOM05D004333 ORTHO05D005363 0.0e+00 2317.3 2426 50.7
Cc02_g01170 Coffea canephora HOM05D004333 ORTHO05D005363 0.0e+00 2314.7 2409 50.9
DCAR_020346 Daucus carota HOM05D004333 ORTHO05D005363 0.0e+00 2308.1 2380 51.3
PGR142G3828 Punica granatum HOM05D004333 ORTHO05D005363 0.0e+00 2281.1 2400 50.9
GSVIVG01038603001 Vitis vinifera HOM05D004333 ORTHO05D005363 0.0e+00 2280.4 2424 50.7
CsaV3_1G044960 Cucumis sativus L. HOM05D004333 ORTHO05D005363 0.0e+00 2277.3 2430 50.8
Sc19g0000760 Simmondsia chinensis HOM05D004333 ORTHO05D005363 0.0e+00 2277.3 2411 50.5
MELO3C010103.2 Cucumis melo HOM05D004333 ORTHO05D005363 0.0e+00 2275.7 2429 50.8
Nitab4.5_0010367g0010 Nicotiana tabacum HOM05D004333 ORTHO05D005363 0.0e+00 2265.7 2384 50.4
MSTRG.27005 Avicennia marina HOM05D004333 ORTHO05D005363 0.0e+00 2260.0 2419 49.6
SGA_v2.0_scaffold18G08437 Striga asiatica HOM05D004333 ORTHO05D005363 0.0e+00 2252.2 2436 49.2
Peaxi162Scf00740g00426 Petunia axillaris HOM05D004333 ORTHO05D005363 0.0e+00 2247.6 2422 49.2
EL10Ac9g21652 Beta vulgaris HOM05D004333 ORTHO05D005363 0.0e+00 2239.9 2405 49.6
Nitab4.5_0008197g0020 Nicotiana tabacum HOM05D004333 ORTHO05D005363 0.0e+00 2236.8 2433 49.2
Hund21026 Selenicereus undatus HOM05D004333 ORTHO05D005363 0.0e+00 2235.3 2419 49.4
AUR62010404 Chenopodium quinoa HOM05D004333 ORTHO05D005363 0.0e+00 2223.7 2419 48.9
Lsat_1_v5_gn_9_49400 Lactuca sativa HOM05D004333 ORTHO05D005363 0.0e+00 2223.7 2398 48.8
HanXRQChr04g0107121 Helianthus annuus HOM05D004333 ORTHO05D005363 0.0e+00 2222.6 2419 48.8
Aqoxy5G04259 Aquilegia oxysepala HOM05D004333 ORTHO05D005363 0.0e+00 2214.1 2445 48.0
MBI06_g06689_MAGBIO Magnolia biondii HOM05D004333 ORTHO05D005363 0.0e+00 2212.2 2462 48.6
AUR62016813 Chenopodium quinoa HOM05D004333 ORTHO05D005363 0.0e+00 2208.7 2423 48.7
Duzib068G0008 Durio zibethinus HOM05D004333 ORTHO05D005363 0.0e+00 2199.1 2421 49.9
Ah.01g018970 Amaranthus hybridus HOM05D004333 ORTHO05D005363 0.0e+00 2187.5 2417 48.3
COL.COLO4_16822 Corchorus olitorius HOM05D004333 ORTHO05D005363 0.0e+00 2164.8 2418 49.9
PSO063G3257 Papaver somniferum HOM05D004333 ORTHO05D005363 0.0e+00 2164.4 2431 48.2
CSS0015753 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 0.0e+00 2004.2 1946 54.1
CSS0025528 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 0.0e+00 1999.9 1946 54.0
ECA232G2446 Erigeron canadensis HOM05D004333 ORTHO05D005363 0.0e+00 1954.1 2227 47.5
CDE02G3740 Ceratophyllum demersum HOM05D004333 ORTHO05D005363 0.0e+00 1948.3 2375 44.6
ATR0697G293 Amborella trichopoda HOM05D004333 ORTHO05D005363 0.0e+00 1858.2 2417 44.3
Psat5g074840 Pisum sativum HOM05D004333 ORTHO05D005363 0.0e+00 1857.4 1844 52.3
Zm00001eb359130 Zea mays HOM05D004333 ORTHO05D005363 0.0e+00 1800.0 2477 41.9
unitig_0.g2452 Utricularia gibba HOM05D004333 ORTHO05D005363 0.0e+00 1646.7 2401 40.4
Gorai.006G202800 Gossypium raimondii HOM05D004333 ORTHO05D005363 0.0e+00 1619.4 1460 56.9
Aa31LG11G3970 Aethionema arabicum HOM05D004333 ORTHO05D005363 0.0e+00 1615.5 1011 78.8
Gohir.A09G185800 Gossypium hirsutum HOM05D004333 ORTHO05D005363 0.0e+00 1613.2 1461 57.0
VMungo1309G3147 Vigna mungo HOM05D004333 ORTHO05D005363 0.0e+00 1577.0 1521 55.2
Cpa.g.c29767.1 Carica papaya HOM05D004333 ORTHO05D005363 0.0e+00 1541.6 1416 58.4
Carub.0006s2217 Capsella rubella HOM05D004333 ORTHO05D005363 0.0e+00 1408.3 757 91.7
Solyc03g082680.4 Solanum lycopersicum HOM05D004333 ORTHO05D005363 0.0e+00 1337.4 1449 50.2
Gohir.D09G180800 Gossypium hirsutum HOM05D004333 ORTHO05D005363 0.0e+00 1253.4 1086 58.5
CAN.G481.60 Capsicum annuum HOM05D004333 ORTHO05D005363 0.0e+00 1222.2 1375 48.7
HPP92_002817 Vanilla planifolia HOM05D004333 ORTHO05D005363 0.0e+00 1173.3 1488 42.8
CAN.G481.57 Capsicum annuum HOM05D004333 ORTHO05D005363 0.0e+00 1159.4 1420 46.3
Eucgr.D00250 Eucalyptus grandis HOM05D004333 ORTHO05D005363 0.0e+00 1147.5 1144 52.4
SalBow4G2088 Salvia bowleyana HOM05D004333 ORTHO05D005363 0.0e+00 1107.0 1030 55.5
CAN.G481.56 Capsicum annuum HOM05D004333 ORTHO05D005363 1.3e-287 994.6 1003 50.7
AagrBONN_evm.TU.Sc2ySwM_362.1567 Anthoceros agrestis HOM05D004333 ORTHO05D005363 2.0e-275 954.1 2629 28.4
SHI08278 Sapria himalayana HOM05D004333 ORTHO05D005363 9.2e-273 945.3 1377 41.8
Mapoly0143s0007 Marchantia polymorpha HOM05D004333 ORTHO05D005363 1.9e-254 884.4 2082 31.6
Pp3c1_3140 Physcomitrium patens HOM05D004333 ORTHO05D005363 5.8e-243 846.3 2033 30.7
VMungo1309G1648 Vigna mungo HOM05D004333 ORTHO05D005363 3.7e-237 827.0 902 48.8
Psat0s2221g0080 Pisum sativum HOM05D004333 ORTHO05D005363 1.1e-217 762.3 850 48.2
SEGI_24760 Sequoiadendron giganteum HOM05D004333 ORTHO05D005363 2.0e-211 741.5 1479 35.0
CBR_g48777 Chara braunii HOM05D004333 ORTHO05D005363 5.2e-207 726.9 2639 26.0
SMO356G0059 Selaginella moellendorffii HOM05D004333 ORTHO05D005363 2.9e-178 631.3 791 43.1
Eucgr.D00251 Eucalyptus grandis HOM05D004333 ORTHO05D005363 2.1e-176 625.2 807 45.0
Oeu001936.1 Olea europaea HOM05D004333 ORTHO05D005363 1.5e-150 539.3 580 48.4
Cpa.g.c45444 Carica papaya HOM05D004333 ORTHO05D005363 3.5e-115 421.8 312 62.8
Actinidia34248 Actinidia chinensis HOM05D004333 ORTHO05D005363 3.3e-105 388.7 406 49.5
Psat1g135480 Pisum sativum HOM05D004333 ORTHO05D005363 1.2e-99 370.2 259 69.1
CSS0041108 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 7.4e-97 360.9 470 43.2
CSS0044449 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 1.1e-95 357.1 470 43.2
SHI08285 Sapria himalayana HOM05D004333 ORTHO05D000009 6.1e-91 341.3 335 51.0
CAN.G481.55 Capsicum annuum HOM05D004333 ORTHO05D005363 2.2e-80 306.2 392 42.1
SEGI_07013 Sequoiadendron giganteum HOM05D004333 ORTHO05D000001 8.5e-77 294.3 335 48.1
BcaNung02039 Brassica carinata HOM05D004333 ORTHO05D005363 1.5e-76 293.5 329 55.6
CAN.G481.58 Capsicum annuum HOM05D004333 ORTHO05D005363 4.1e-71 275.4 216 60.2
Actinidia34249 Actinidia chinensis HOM05D004333 ORTHO05D005363 2.0e-70 273.1 318 46.9
Os12g0233600 Oryza sativa ssp. japonica HOM05D004333 ORTHO05D005363 1.7e-64 253.4 437 35.7
SHI08286 Sapria himalayana HOM05D004333 ORTHO05D005363 4.9e-64 251.9 329 43.2
SEGI_10720 Sequoiadendron giganteum HOM05D004333 ORTHO05D005363 1.4e-63 250.4 475 32.2
Psat0s3076g0080 Pisum sativum HOM05D004333 ORTHO05D001713 5.2e-50 205.3 150 67.3
Psat4g066600 Pisum sativum HOM05D004333 ORTHO05D005363 1.2e-46 194.1 277 42.6
Nitab4.5_0004178g0050 Nicotiana tabacum HOM05D004333 ORTHO05D005363 6.0e-46 191.8 261 43.7
CAN.G481.59 Capsicum annuum HOM05D004333 ORTHO05D005363 1.0e-45 191.0 122 74.6
Nitab4.5_0004178g0060 Nicotiana tabacum HOM05D004333 ORTHO05D005363 2.3e-45 189.9 368 37.5
Cre09.g415400 Chlamydomonas reinhardtii HOM05D004333 ORTHO05D005363 5.2e-42 178.7 793 23.2
Nitab4.5_0004178g0040 Nicotiana tabacum HOM05D004333 ORTHO05D005363 4.4e-41 175.6 176 46.6
SHI08279 Sapria himalayana HOM05D004333 ORTHO05D005363 3.2e-39 169.5 123 69.1
Lj4g0026522 Lotus japonicus HOM05D004333 ORTHO05D005363 4.1e-39 169.1 149 60.4
CAN.G3762.1 Capsicum annuum HOM05D004333 ORTHO05D005363 8.6e-37 161.4 239 38.5
arahy.Tifrunner.gnm1.ann1.7A8JPA Arachis hypogaea HOM05D004333 ORTHO05D005363 2.1e-35 156.8 137 60.6
A02p40370 Brassica napus HOM05D004333 ORTHO05D005363 3.6e-35 156.0 100 72.0
Psat1g176920 Pisum sativum HOM05D004333 ORTHO05D005363 1.1e-34 154.5 110 68.2
Oeu001937.1 Olea europaea HOM05D004333 ORTHO05D005363 2.9e-32 146.4 194 46.4
Psat1g100720 Pisum sativum HOM05D004333 ORTHO05D005363 4.9e-32 145.6 298 35.9
Oeu049088.1 Olea europaea HOM05D004333 ORTHO05D005363 9.6e-28 131.3 97 63.9
MCO09G360 Micromonas commoda HOM05D004333 ORTHO05D005363 9.9e-25 121.3 326 28.2
Psat1g176800 Pisum sativum HOM05D004029 ORTHO05D004613 8.4e-24 118.2 83 68.7
SHI08287 Sapria himalayana HOM05D004333 ORTHO05D005363 9.3e-23 114.8 166 41.0
BcaC03g17972 Brassica carinata HOM05D029566 ORTHO05D027379 6.6e-21 108.6 173 42.8
Psat6g091080 Pisum sativum HOM05D004333 ORTHO05D005363 8.7e-21 108.2 145 40.0
Nitab4.5_0004178g0010 Nicotiana tabacum HOM05D004333 ORTHO05D005363 1.5e-20 107.5 287 28.6
Psat5g193520 Pisum sativum HOM05D001137 ORTHO05D001967 3.3e-20 106.3 131 40.5
Psat3g000280 Pisum sativum HOM05D002984 ORTHO05D005363 3.5e-14 86.3 124 36.3
BcaC03g17980 Brassica carinata HOM05D004333 ORTHO05D005363 7.9e-14 85.1 72 68.1
Nitab4.5_0004178g0020 Nicotiana tabacum HOM05D004333 ORTHO05D005363 7.9e-14 85.1 196 30.1
Psat6g175840 Pisum sativum HOM05D006947 ORTHO05D005363 6.7e-13 82.0 182 30.8
Psat4g128000 Pisum sativum HOM05D002621 ORTHO05D004807 1.9e-12 80.5 114 39.5
BolC2t12087H Brassica oleracea HOM05D004333 ORTHO05D040299 6.2e-11 75.5 104 43.3
ATR0697G222 Amborella trichopoda HOM05D004333 ORTHO05D038300 9.0e-10 71.6 103 38.8
arahy.Tifrunner.gnm1.ann1.UK8Y7I Arachis hypogaea HOM05D004333 ORTHO05D005363 2.2e-08 67.0 128 36.7
Nitab4.5_0004178g0030 Nicotiana tabacum HOM05D004333 ORTHO05D005363 2.9e-08 66.6 72 44.4
Psat0s2975g0120 Pisum sativum HOM05D000832 ORTHO05D013522 6.4e-08 65.5 76 43.4
C02p60330 Brassica napus HOM05D029566 ORTHO05D027379 2.5e-07 63.5 73 50.7
BolC2t12089H Brassica oleracea HOM05D029566 ORTHO05D027379 2.5e-07 63.5 73 50.7
A02p40500 Brassica napus HOM05D029566 ORTHO05D027379 3.2e-07 63.2 73 50.7
COL.COLO4_19568 Corchorus olitorius HOM05D005366 ORTHO05D006323 2.1e-06 60.5 42 73.8
A02p40430 Brassica napus HOM05D004333 ORTHO05D040299 7.9e-06 58.5 29 82.8


User provided reference genes

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