Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G32560 Arabidopsis lyrata HOM05D001598 ORTHO05D007192 0.0e+00 1301.6 672 100.0
AT5G20990 Arabidopsis thaliana HOM05D001598 ORTHO05D007192 0.0e+00 1255.4 672 96.6
CARHR191850 Cardamine hirsuta HOM05D001598 ORTHO05D007192 0.0e+00 1223.0 673 94.2
Carub.0006s1931 Capsella rubella HOM05D001598 ORTHO05D007192 0.0e+00 1219.5 672 94.3
Thhalv10012894m.g Eutrema salsugineum HOM05D001598 ORTHO05D007192 0.0e+00 1199.5 672 92.3
BraA03t10351Z Brassica rapa HOM05D001598 ORTHO05D007192 0.0e+00 1173.7 674 90.5
A03p10390 Brassica napus HOM05D001598 ORTHO05D007192 0.0e+00 1169.1 672 89.7
BolC3t13663H Brassica oleracea HOM05D001598 ORTHO05D007192 0.0e+00 1157.1 674 89.0
Sp6g23530 Schrenkiella parvula HOM05D001598 ORTHO05D007192 0.0e+00 1145.2 668 89.7
C03p11930 Brassica napus HOM05D001598 ORTHO05D007192 0.0e+00 1139.0 674 88.6
Aa31LG1G13740 Aethionema arabicum HOM05D001598 ORTHO05D007192 0.0e+00 1076.6 672 83.2
Dinv32128 Davidia involucrata HOM05D001598 ORTHO05D007192 5.6e-284 980.7 665 75.8
Ciclev10014503m.g Citrus clementina HOM05D001598 ORTHO05D007192 2.2e-280 968.8 676 73.5
Rhsim01G0197500 Rhododendron simsii HOM05D001598 ORTHO05D007192 4.1e-279 964.5 663 74.5
COL.COLO4_25318 Corchorus olitorius HOM05D001598 ORTHO05D007192 9.2e-279 963.4 676 73.7
CSS0038227 Camellia sinensis var. sinensis HOM05D001598 ORTHO05D007192 1.6e-278 962.6 662 73.6
Atru.chr3.2751 Acer truncatum HOM05D001598 ORTHO05D007192 5.1e-277 957.6 663 73.8
Gorai.009G080100 Gossypium raimondii HOM05D001598 ORTHO05D007192 8.6e-277 956.8 663 73.9
vmacro14297 Vaccinium macrocarpon HOM05D001598 ORTHO05D007192 1.1e-276 956.4 668 73.5
Gohir.A05G076000 Gossypium hirsutum HOM05D001598 ORTHO05D007192 2.5e-276 955.3 663 73.8
Potri.009G156400 Populus trichocarpa HOM05D001598 ORTHO05D007192 1.6e-275 952.6 661 74.6
Eucgr.J00614 Eucalyptus grandis HOM05D001598 ORTHO05D007192 4.7e-275 951.0 664 73.5
Hma1.2p1_0218F.1_g092460 Hydrangea macrophylla HOM05D001598 ORTHO05D007192 6.2e-275 950.7 658 72.9
Gohir.D05G078700 Gossypium hirsutum HOM05D001598 ORTHO05D007192 1.4e-274 949.5 649 74.6
TAR375G0698 Trochodendron aralioides HOM05D001598 ORTHO05D007192 4.4e-273 944.5 661 73.2
CANSAT54G2824 Cannabis sativa HOM05D001598 ORTHO05D007192 2.2e-272 942.2 663 72.9
Sabra09G0122500 Salix brachista HOM05D001598 ORTHO05D007192 2.4e-271 938.7 661 74.1
RcHm_v2.0_Chr5g0048741 Rosa chinensis HOM05D001598 ORTHO05D007192 9.3e-271 936.8 664 71.8
PGR119G0245 Punica granatum HOM05D001598 ORTHO05D007192 2.7e-270 935.3 668 72.5
AUR62020182 Chenopodium quinoa HOM05D001598 ORTHO05D007192 3.5e-270 934.9 660 72.6
DCAR_000741 Daucus carota HOM05D001598 ORTHO05D007192 3.0e-269 931.8 659 72.4
MD11G1181200 Malus domestica HOM05D001598 ORTHO05D007192 1.3e-267 926.4 660 72.1
CiPaw.13G127200 Carya illinoinensis HOM05D001598 ORTHO05D007192 3.6e-267 924.9 674 71.4
CsaV3_1G041840 Cucumis sativus L. HOM05D001598 ORTHO05D007192 1.1e-266 923.3 663 71.6
TWI31G0930 Tripterygium wilfordii HOM05D001598 ORTHO05D007192 6.9e-266 920.6 660 72.0
Sed0001025 Sechium edule HOM05D001598 ORTHO05D007192 9.0e-266 920.2 666 71.0
Solyc01g009050.3 Solanum lycopersicum HOM05D001598 ORTHO05D007192 1.2e-265 919.8 675 69.9
MELO3C015599.2 Cucumis melo HOM05D001598 ORTHO05D007192 2.0e-265 919.1 663 71.6
Sopen01g004540 Solanum pennellii HOM05D001598 ORTHO05D007192 5.8e-265 917.5 675 69.8
Hund20974 Selenicereus undatus HOM05D001598 ORTHO05D007192 1.7e-264 916.0 653 72.6
PSO063G3947 Papaver somniferum HOM05D001598 ORTHO05D007192 2.9e-264 915.2 673 69.8
CAN.G651.7 Capsicum annuum HOM05D001598 ORTHO05D007192 3.8e-264 914.8 672 69.9
Aqoxy3G02341 Aquilegia oxysepala HOM05D001598 ORTHO05D007192 1.4e-263 912.9 666 69.8
GSVIVG01037501001 Vitis vinifera HOM05D001598 ORTHO05D007192 1.4e-263 912.9 663 71.5
Glyma.02G272700 Glycine max HOM05D001598 ORTHO05D007192 2.4e-263 912.1 658 70.5
Phvul.008G209600 Phaseolus vulgaris HOM05D001598 ORTHO05D007192 2.1e-262 909.1 658 70.4
Lalb_Chr10g0105801 Lupinus albus HOM05D001598 ORTHO05D007192 5.1e-261 904.4 655 70.2
VMungo0647G2429 Vigna mungo HOM05D001598 ORTHO05D007192 8.7e-261 903.7 661 69.4
ClCG03G014390 Citrullus lanatus HOM05D001598 ORTHO05D007192 4.3e-260 901.4 667 70.3
Migut.N02410 Erythranthe guttata HOM05D001598 ORTHO05D007192 3.6e-259 898.3 669 68.6
Actinidia22467 Actinidia chinensis HOM05D001598 ORTHO05D007192 4.8e-259 897.9 661 71.0
EL10Ac7g16239 Beta vulgaris HOM05D001598 ORTHO05D007192 2.4e-258 895.6 692 67.3
LjContig00564g0017485 Lotus japonicus HOM05D001598 ORTHO05D007192 4.0e-258 894.8 658 70.1
HanXRQChr06g0180651 Helianthus annuus HOM05D001598 ORTHO05D007192 9.0e-258 893.6 640 70.9
MSTRG.12417 Avicennia marina HOM05D001598 ORTHO05D007192 3.4e-257 891.7 666 69.4
Medtr5g087490 Medicago truncatula HOM05D001598 ORTHO05D007192 4.5e-257 891.3 658 69.3
Nitab4.5_0002300g0120 Nicotiana tabacum HOM05D001598 ORTHO05D007192 7.6e-257 890.6 645 70.1
TPR.G11692 Trifolium pratense HOM05D001598 ORTHO05D007192 1.3e-256 889.8 658 69.1
SalBow3G4459 Salvia bowleyana HOM05D001598 ORTHO05D007192 2.2e-256 889.0 667 67.8
SGA_v2.0_scaffold16G07584 Striga asiatica HOM05D001598 ORTHO05D007192 2.4e-255 885.6 664 68.5
ECA247G1799 Erigeron canadensis HOM05D001598 ORTHO05D007192 1.2e-254 883.2 660 69.2
Cc01_g07890 Coffea canephora HOM05D001598 ORTHO05D007192 2.1e-254 882.5 669 68.2
arahy.Tifrunner.gnm1.ann1.4UW9RQ Arachis hypogaea HOM05D001598 ORTHO05D007192 1.1e-252 876.7 696 66.1
arahy.Tifrunner.gnm1.ann1.IS34PQ Arachis hypogaea HOM05D001598 ORTHO05D007192 2.5e-252 875.5 696 65.8
Lsat_1_v5_gn_2_37520 Lactuca sativa HOM05D001598 ORTHO05D007192 2.4e-250 869.0 647 70.2
FAN25G1601 Fragaria x ananassa HOM05D001598 ORTHO05D007192 3.1e-250 868.6 661 67.9
FAN11G2542 Fragaria x ananassa HOM05D001598 ORTHO05D007192 2.9e-248 862.1 667 67.0
FAN21G0325 Fragaria x ananassa HOM05D001598 ORTHO05D007192 9.3e-247 857.1 650 68.2
Manes.11G103300 Manihot esculenta HOM05D001598 ORTHO05D007192 3.0e-245 852.0 589 73.5
AUR62001598 Chenopodium quinoa HOM05D001598 ORTHO05D007192 3.9e-245 851.7 688 66.6
MBI07_g03077_MAGBIO Magnolia biondii HOM05D001598 ORTHO05D007192 1.9e-244 849.4 674 65.7
Ah.08g222590 Amaranthus hybridus HOM05D001598 ORTHO05D007192 1.8e-242 842.8 611 71.5
Zm00001eb432770 Zea mays HOM05D001598 ORTHO05D007192 2.0e-241 839.3 663 67.1
Cpa.g.sc34.224 Carica papaya HOM05D001598 ORTHO05D007192 3.8e-240 835.1 622 70.6
Nitab4.5_0000428g0110 Nicotiana tabacum HOM05D001598 ORTHO05D007192 5.5e-239 831.2 660 65.8
Psat2g023160 Pisum sativum HOM05D001598 ORTHO05D007192 5.5e-239 831.2 607 70.8
unitig_8.g2986 Utricularia gibba HOM05D001598 ORTHO05D007192 1.3e-237 826.6 649 67.6
ATR0215G007 Amborella trichopoda HOM05D001598 ORTHO05D007192 3.9e-237 825.1 663 64.9
Thecc.09G265000 Theobroma cacao HOM05D001598 ORTHO05D007192 3.3e-236 822.0 677 65.3
Haze_23633 Corylus avellana HOM05D001598 ORTHO05D007192 4.8e-235 818.1 778 59.5
Prupe.6G153900 Prunus persica HOM05D001598 ORTHO05D007192 5.3e-234 814.7 589 72.0
Oeu051504.1 Olea europaea HOM05D001598 ORTHO05D007192 3.9e-229 798.5 665 65.4
Sc21g0006570 Simmondsia chinensis HOM05D001598 ORTHO05D007192 1.2e-222 776.9 592 67.9
Peaxi162Scf00050g02227 Petunia axillaris HOM05D001598 ORTHO05D007192 2.7e-222 775.8 873 51.4
Pp3c14_4050 Physcomitrium patens HOM05D001598 ORTHO05D007192 7.0e-218 761.1 669 59.3
CDE02G2133 Ceratophyllum demersum HOM05D001598 ORTHO05D007192 7.2e-215 751.1 665 60.8
Ca_06138_v3 Cicer arietinum L. HOM05D001598 ORTHO05D007192 4.0e-213 745.3 658 61.7
CDE06G2705 Ceratophyllum demersum HOM05D001598 ORTHO05D007192 1.6e-209 733.4 681 59.5
SMO145G0256 Selaginella moellendorffii HOM05D001598 ORTHO05D007192 2.5e-207 726.1 658 58.4
QL01p007286 Quercus lobata HOM05D001598 ORTHO05D007192 1.4e-194 683.7 852 48.0
FvH4_3g26260 Fragaria vesca HOM05D001598 ORTHO05D007192 8.6e-192 674.5 513 67.4
CSS0048937 Camellia sinensis var. sinensis HOM05D001598 ORTHO05D007192 3.0e-189 666.0 478 70.3
AagrBONN_evm.TU.Sc2ySwM_228.3025 Anthoceros agrestis HOM05D001598 ORTHO05D007192 1.2e-188 664.1 668 54.5
HPP92_013469 Vanilla planifolia HOM05D001598 ORTHO05D007192 1.8e-181 640.2 558 60.0
Lj2C893G11 Lonicera japonica HOM05D001598 ORTHO05D007192 9.5e-175 617.8 476 66.8
Atru.ctg664.11 Acer truncatum HOM05D001598 ORTHO05D007192 1.7e-168 597.0 497 65.2
Mapoly1495s0001 Marchantia polymorpha HOM05D001598 ORTHO05D007192 4.3e-167 592.4 582 54.8
HPP92_013468 Vanilla planifolia HOM05D001598 ORTHO05D007192 1.3e-160 570.9 605 52.9
SEGI_02371 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 3.8e-147 526.2 436 63.1
Lj2A895G19 Lonicera japonica HOM05D001598 ORTHO05D007192 3.3e-135 486.5 437 59.3
Cre10.g451400 Chlamydomonas reinhardtii HOM05D001598 ORTHO05D007192 7.2e-114 415.6 476 49.6
SEGI_00915 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 6.3e-110 402.5 345 61.2
SHI25335 Sapria himalayana HOM05D001598 ORTHO05D000001 1.5e-82 311.6 237 64.1
AagrBONN_evm.TU.Sc2ySwM_117.1323 Anthoceros agrestis HOM05D001598 ORTHO05D007192 5.2e-80 303.1 319 52.7
MCO09G295 Micromonas commoda HOM05D001598 ORTHO05D007192 2.8e-78 297.4 445 42.7
Lj2A895T22 Lonicera japonica HOM05D001598 ORTHO05D007192 4.5e-76 290.0 205 73.7
CSS0046041 Camellia sinensis var. sinensis HOM05D001598 ORTHO05D007192 3.8e-75 287.0 209 72.2
HPP92_013448 Vanilla planifolia HOM05D001598 ORTHO05D007192 1.9e-66 258.1 165 77.0
TPR.G11462 Trifolium pratense HOM05D001598 ORTHO05D007192 3.1e-64 250.8 284 50.4
PRCOL_00000516 Prasinoderma coloniale HOM05D005603 ORTHO05D006944 4.0e-64 250.4 380 42.1
vmacro23059 Vaccinium macrocarpon HOM05D001598 ORTHO05D007192 6.6e-59 233.0 250 54.8
SEGI_37017 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 1.5e-58 231.9 174 64.4
Nn1g00103 Nelumbo nucifera HOM05D001598 ORTHO05D007192 6.8e-48 196.4 137 73.0
Zm00001eb067470 Zea mays HOM05D001598 ORTHO05D007192 1.2e-41 175.6 168 59.5
CBR_g53773 Chara braunii HOM05D000019 ORTHO05D000002 1.8e-40 171.8 427 31.4
HanXRQChr07g0205981 Helianthus annuus HOM05D001598 ORTHO05D007192 8.4e-38 162.9 95 84.2
TPR.G24627 Trifolium pratense HOM05D001598 ORTHO05D007192 4.2e-37 160.6 146 56.8
QL01p007301 Quercus lobata HOM05D001598 ORTHO05D007192 7.1e-37 159.8 134 65.7
CBR_g53784 Chara braunii HOM05D001598 ORTHO05D007192 9.3e-37 159.5 151 57.0
BcaB08g37328 Brassica carinata HOM05D001598 ORTHO05D007192 3.9e-35 154.1 91 82.4
Nn1g08035 Nelumbo nucifera HOM05D001598 ORTHO05D007192 9.0e-32 142.9 96 70.8
Lj2C893T10 Lonicera japonica HOM05D001598 ORTHO05D007192 5.8e-31 140.2 79 87.3
SHI25334 Sapria himalayana HOM05D001598 ORTHO05D000001 9.9e-31 139.4 88 76.1
Mapoly0056s0125 Marchantia polymorpha HOM05D001598 ORTHO05D007192 3.0e-27 127.9 96 63.5
SEGI_32063 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 3.0e-27 127.9 113 56.6
PRCOL_00002568 Prasinoderma coloniale HOM05D001598 ORTHO05D007192 4.3e-26 124.0 153 45.8
BcaB08g37330 Brassica carinata HOM05D001598 ORTHO05D007192 2.8e-25 121.3 84 77.4
MCO03G199 Micromonas commoda HOM05D001598 ORTHO05D007192 4.5e-23 114.0 210 38.1
SGA_v2.0_scaffold6G03251 Striga asiatica HOM05D001598 ORTHO05D007192 8.4e-22 109.8 162 46.9
Ca_14173_v3 Cicer arietinum L. HOM05D000092 ORTHO05D005910 1.9e-21 108.6 96 60.4
BcaC04g19497 Brassica carinata HOM05D001598 ORTHO05D007192 1.0e-19 102.8 91 65.9
Ca_02574_v3 Cicer arietinum L. HOM05D000009 ORTHO05D000008 1.3e-19 102.4 84 60.7
Cre06.g282150 Chlamydomonas reinhardtii HOM05D001598 ORTHO05D007192 5.1e-19 100.5 170 38.2
TAR374G1328 Trochodendron aralioides HOM05D001598 ORTHO05D007192 5.1e-19 100.5 55 89.1
Glyma.14G045450 Glycine max HOM05D001598 ORTHO05D007192 1.5e-18 99.0 65 72.3
Sc01g0005570 Simmondsia chinensis HOM05D001598 ORTHO05D007192 2.0e-15 88.6 67 64.2
Gohir.D02G147550 Gossypium hirsutum HOM05D006828 ORTHO05D008312 1.0e-14 86.3 50 78.0
Gorai.013G167300 Gossypium raimondii HOM05D006828 ORTHO05D008312 1.0e-14 86.3 50 78.0
Os04g0661600 Oryza sativa ssp. japonica HOM05D001598 ORTHO05D007192 4.9e-14 84.0 62 64.5
Gohir.D05G085901 Gossypium hirsutum HOM05D001598 ORTHO05D008312 4.2e-13 80.9 60 65.0
CBR_g53769 Chara braunii HOM05D000019 ORTHO05D000002 1.2e-12 79.3 61 57.4
TPR.G22712 Trifolium pratense HOM05D001598 ORTHO05D046738 6.7e-11 73.6 89 49.4
BraA10t43982Z Brassica rapa HOM05D000234 ORTHO05D001258 5.7e-10 70.5 52 69.2
SMO307G0084 Selaginella moellendorffii HOM05D001598 ORTHO05D007192 1.6e-09 68.9 65 44.6
TWI56G1164 Tripterygium wilfordii HOM05D001598 ORTHO05D007192 3.4e-07 61.2 49 61.2
Glyma.16G121250 Glycine max HOM05D001598 ORTHO05D046738 6.5e-06 57.0 54 57.4


User provided reference genes

Program Settings