Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G31730 Arabidopsis lyrata HOM05D005966 ORTHO05D007584 0.0e+00 1268.4 652 100.0
AT5G20170 Arabidopsis thaliana HOM05D005966 ORTHO05D007584 0.0e+00 1208.7 650 95.2
Carub.0006s1857 Capsella rubella HOM05D005966 ORTHO05D007584 0.0e+00 1192.6 650 94.9
CARHR192650 Cardamine hirsuta HOM05D005966 ORTHO05D007584 0.0e+00 1139.4 650 90.5
Sp6g24230 Schrenkiella parvula HOM05D005966 ORTHO05D007584 0.0e+00 1134.4 649 89.8
A03p09900 Brassica napus HOM05D005966 ORTHO05D007584 0.0e+00 1126.3 650 89.5
Thhalv10012923m.g Eutrema salsugineum HOM05D005966 ORTHO05D007584 0.0e+00 1118.2 649 89.1
BolC3t13620H Brassica oleracea HOM05D005966 ORTHO05D007584 0.0e+00 1116.3 651 88.8
C03p11480 Brassica napus HOM05D005966 ORTHO05D007584 0.0e+00 1112.4 650 88.6
BraA03t10303Z Brassica rapa HOM05D005966 ORTHO05D007584 0.0e+00 1100.9 653 87.4
Aa31LG1G14440 Aethionema arabicum HOM05D005966 ORTHO05D007584 7.8e-299 1030.0 656 81.7
THA.LOC104799647 Tarenaya hassleriana HOM05D005966 ORTHO05D007584 2.3e-258 895.6 654 73.9
Gorai.001G041100 Gossypium raimondii HOM05D005966 ORTHO05D007584 6.3e-224 781.2 664 63.4
Gohir.A07G035000 Gossypium hirsutum HOM05D005966 ORTHO05D007584 2.4e-223 779.2 664 63.1
Cfa003353 Carpinus fangiana HOM05D005966 ORTHO05D007584 1.0e-218 763.8 659 60.8
CiPaw.04G170200 Carya illinoinensis HOM05D005966 ORTHO05D007584 1.0e-218 763.8 659 61.6
Duzib187G1826 Durio zibethinus HOM05D005966 ORTHO05D007584 2.3e-218 762.7 668 62.7
Hma1.2p1_0018F.1_g012590 Hydrangea macrophylla HOM05D005966 ORTHO05D007584 3.0e-218 762.3 662 60.0
Dinv36541 Davidia involucrata HOM05D005966 ORTHO05D007584 6.8e-218 761.1 662 60.7
Haze_25609 Corylus avellana HOM05D005966 ORTHO05D007584 5.7e-217 758.1 672 59.8
Thecc.09G123800 Theobroma cacao HOM05D005966 ORTHO05D007584 9.8e-217 757.3 667 62.1
Atru.chr7.1212 Acer truncatum HOM05D005966 ORTHO05D007584 1.9e-212 743.0 663 61.1
Prupe.7G240500 Prunus persica HOM05D005966 ORTHO05D007584 1.9e-212 743.0 661 60.4
MD15G1175600 Malus domestica HOM05D005966 ORTHO05D007584 2.7e-211 739.2 664 59.0
Ciclev10007689m.g Citrus clementina HOM05D005966 ORTHO05D007584 2.3e-210 736.1 662 59.4
GSVIVG01015509001 Vitis vinifera HOM05D005966 ORTHO05D007584 3.0e-210 735.7 663 58.8
CsaV3_5G040100 Cucumis sativus L. HOM05D005966 ORTHO05D007584 1.2e-209 733.8 659 60.1
MELO3C022187.2 Cucumis melo HOM05D005966 ORTHO05D007584 3.7e-208 728.8 659 59.8
Gohir.D07G039000 Gossypium hirsutum HOM05D005966 ORTHO05D007584 3.1e-207 725.7 664 60.2
Potri.015G057100 Populus trichocarpa HOM05D005966 ORTHO05D007584 3.1e-207 725.7 669 59.3
ClCG08G000940 Citrullus lanatus HOM05D005966 ORTHO05D007584 4.1e-207 725.3 659 59.5
Gorai.009G019100 Gossypium raimondii HOM05D005966 ORTHO05D007584 2.7e-206 722.6 675 59.3
CANSAT11G2564 Cannabis sativa HOM05D005966 ORTHO05D007584 1.0e-205 720.7 663 58.4
Eucgr.C04186 Eucalyptus grandis HOM05D005966 ORTHO05D007584 1.7e-205 719.9 663 57.5
Gohir.A05G017800 Gossypium hirsutum HOM05D005966 ORTHO05D007584 1.7e-205 719.9 675 59.0
Sed0002176 Sechium edule HOM05D005966 ORTHO05D007584 4.2e-204 715.3 659 60.2
RcHm_v2.0_Chr7g0212931 Rosa chinensis HOM05D005966 ORTHO05D007584 4.0e-202 708.8 669 57.7
Sopen12g002600 Solanum pennellii HOM05D005966 ORTHO05D007584 5.7e-201 704.9 663 58.1
FvH4_5g23630 Fragaria vesca HOM05D005966 ORTHO05D007584 7.5e-201 704.5 663 57.5
PGSC0003DMG400020667 Solanum tuberosum HOM05D005966 ORTHO05D007584 7.5e-201 704.5 664 58.1
DCAR_014873 Daucus carota HOM05D005966 ORTHO05D007584 9.8e-201 704.1 661 57.9
Solyc12g006650.2 Solanum lycopersicum HOM05D005966 ORTHO05D007584 9.8e-201 704.1 663 57.9
FAN13G2896 Fragaria x ananassa HOM05D005966 ORTHO05D007584 1.1e-199 700.7 663 57.0
Nitab4.5_0007523g0010 Nicotiana tabacum HOM05D005966 ORTHO05D007584 1.8e-199 699.9 668 56.9
SGA_v2.0_scaffold163G38051 Striga asiatica HOM05D005966 ORTHO05D007584 2.4e-199 699.5 669 57.4
Sabra15G0082400 Salix brachista HOM05D005966 ORTHO05D007584 3.2e-199 699.1 669 58.4
CAN.G377.10 Capsicum annuum HOM05D005966 ORTHO05D007584 5.4e-199 698.4 663 57.3
FAN18G1628 Fragaria x ananassa HOM05D005966 ORTHO05D007584 5.4e-199 698.4 658 57.3
Actinidia07431 Actinidia chinensis HOM05D005966 ORTHO05D007584 1.2e-198 697.2 657 56.6
Cc06_g08730 Coffea canephora HOM05D005966 ORTHO05D007584 1.2e-198 697.2 665 56.8
Lj7C631G5 Lonicera japonica HOM05D005966 ORTHO05D007584 6.6e-197 691.4 757 52.3
Glyma.17G117600 Glycine max HOM05D005966 ORTHO05D007584 8.6e-197 691.0 654 58.0
Nitab4.5_0010819g0010 Nicotiana tabacum HOM05D005966 ORTHO05D007584 8.6e-197 691.0 671 56.5
vmacro06121 Vaccinium macrocarpon HOM05D005966 ORTHO05D007584 8.6e-197 691.0 678 54.6
vmacro06181 Vaccinium macrocarpon HOM05D005966 ORTHO05D007584 8.6e-197 691.0 678 54.6
PGR102G3358 Punica granatum HOM05D005966 ORTHO05D007584 1.9e-196 689.9 657 56.3
Glyma.05G009700 Glycine max HOM05D005966 ORTHO05D007584 3.3e-196 689.1 654 57.5
Nn2g12002 Nelumbo nucifera HOM05D005966 ORTHO05D007584 9.5e-196 687.6 668 56.0
arahy.Tifrunner.gnm1.ann1.QB31BF Arachis hypogaea HOM05D005966 ORTHO05D007584 6.2e-195 684.9 658 55.8
MSTRG.14036 Avicennia marina HOM05D005966 ORTHO05D007584 8.0e-195 684.5 665 55.3
VMungo1215G0752 Vigna mungo HOM05D005966 ORTHO05D007584 1.0e-194 684.1 658 56.5
Lj4g0014642 Lotus japonicus HOM05D005966 ORTHO05D007584 1.2e-193 680.6 655 56.8
arahy.Tifrunner.gnm1.ann1.Z0FLIL Arachis hypogaea HOM05D005966 ORTHO05D007584 4.9e-192 675.2 670 54.8
Lalb_Chr07g0178861 Lupinus albus HOM05D005966 ORTHO05D007584 4.9e-192 675.2 655 56.0
Phvul.003G161800 Phaseolus vulgaris HOM05D005966 ORTHO05D007584 1.1e-191 674.1 658 56.5
Medtr4g114100 Medicago truncatula HOM05D005966 ORTHO05D007584 9.2e-191 671.0 657 56.9
FAN18G2691 Fragaria x ananassa HOM05D005966 ORTHO05D007584 2.7e-190 669.5 638 57.1
Actinidia26399 Actinidia chinensis HOM05D005966 ORTHO05D007584 3.5e-190 669.1 682 53.8
PSO170G3915 Papaver somniferum HOM05D005966 ORTHO05D007584 3.5e-190 669.1 669 54.1
TPR.G10691 Trifolium pratense HOM05D005966 ORTHO05D007584 3.5e-190 669.1 661 55.8
Ca_21691_v3 Cicer arietinum L. HOM05D005966 ORTHO05D007584 2.3e-189 666.4 654 56.0
PSO455G0207 Papaver somniferum HOM05D005966 ORTHO05D007584 2.3e-189 666.4 671 54.2
Manes.06G049700 Manihot esculenta HOM05D005966 ORTHO05D007584 5.0e-189 665.2 663 56.4
Psat4g039400 Pisum sativum HOM05D005966 ORTHO05D007584 1.5e-188 663.7 658 56.1
QL02p087915 Quercus lobata HOM05D005966 ORTHO05D007584 2.5e-188 662.9 919 44.1
ECA236G0249 Erigeron canadensis HOM05D005966 ORTHO05D007584 4.3e-188 662.1 660 54.8
CSS0033485 Camellia sinensis var. sinensis HOM05D005966 ORTHO05D007584 7.3e-188 661.4 672 55.5
Oeu018459.1 Olea europaea HOM05D005966 ORTHO05D007584 6.2e-187 658.3 647 55.6
HanXRQChr04g0104201 Helianthus annuus HOM05D005966 ORTHO05D007584 8.1e-187 657.9 659 55.4
Aqoxy5G00491 Aquilegia oxysepala HOM05D005966 ORTHO05D007584 4.0e-186 655.6 669 52.9
TAR636G0633 Trochodendron aralioides HOM05D005966 ORTHO05D007584 8.9e-186 654.4 624 56.4
Oeu021589.1 Olea europaea HOM05D005966 ORTHO05D007584 2.0e-185 653.3 647 54.3
Lsat_1_v5_gn_8_59020 Lactuca sativa HOM05D005966 ORTHO05D007584 9.8e-185 651.0 660 53.9
Migut.E01544 Erythranthe guttata HOM05D005966 ORTHO05D007584 1.7e-184 650.2 664 54.2
Peaxi162Scf00984g00027 Petunia axillaris HOM05D005966 ORTHO05D007584 2.9e-184 649.4 635 55.9
Gohir.D05G018700 Gossypium hirsutum HOM05D005966 ORTHO05D007584 6.6e-181 638.3 675 54.2
SalBow1G1471 Salvia bowleyana HOM05D005966 ORTHO05D007584 4.3e-180 635.6 745 48.9
Hund26492 Selenicereus undatus HOM05D005966 ORTHO05D007584 1.1e-178 630.9 654 52.1
Rhsim03G0247300 Rhododendron simsii HOM05D005966 ORTHO05D007584 1.3e-173 614.0 589 56.5
AUR62033484 Chenopodium quinoa HOM05D005966 ORTHO05D007584 5.1e-173 612.1 671 49.6
AUR62011094 Chenopodium quinoa HOM05D005966 ORTHO05D007584 7.3e-172 608.2 667 49.6
EL10Ac8g18623 Beta vulgaris HOM05D005966 ORTHO05D007584 3.6e-163 579.3 648 48.1
ATR1156G034 Amborella trichopoda HOM05D005966 ORTHO05D007584 6.9e-162 575.1 668 47.5
Sabra15G0082900 Salix brachista HOM05D005966 ORTHO05D007584 2.2e-160 570.1 714 47.3
Ah.14g080180 Amaranthus hybridus HOM05D005966 ORTHO05D007584 1.2e-158 564.3 626 48.9
HPP92_009844 Vanilla planifolia HOM05D005966 ORTHO05D007584 1.9e-156 557.0 662 46.7
Os12g0638600 Oryza sativa ssp. japonica HOM05D005966 ORTHO05D007584 1.9e-148 530.4 670 44.9
MD02G1034800 Malus domestica HOM05D005966 ORTHO05D007584 1.6e-147 527.3 685 47.4
Cpa.g.sc75.51 Carica papaya HOM05D005966 ORTHO05D007584 1.4e-143 514.2 493 58.0
Zm00001eb207940 Zea mays HOM05D005966 ORTHO05D007584 3.3e-140 503.1 664 42.9
SEGI_37567 Sequoiadendron giganteum HOM05D005966 ORTHO05D007584 2.7e-134 483.4 716 39.0
CDE01G0041 Ceratophyllum demersum HOM05D005966 ORTHO05D007584 4.1e-130 469.5 555 46.8
unitig_578.g16582 Utricularia gibba HOM05D005966 ORTHO05D007584 4.3e-124 449.5 649 40.1
Sc08g0006730 Simmondsia chinensis HOM05D005966 ORTHO05D007584 1.4e-122 444.5 524 47.5
Zm00001eb334260 Zea mays HOM05D005966 ORTHO05D007584 3.0e-109 400.2 539 43.6
Glyma.14G007400 Glycine max HOM05D005966 ORTHO05D007584 3.4e-92 343.6 297 60.6
SHI18656 Sapria himalayana HOM05D005966 ORTHO05D007584 5.6e-87 326.2 524 39.7
Mapoly0010s0026 Marchantia polymorpha HOM05D005966 ORTHO05D007584 4.0e-85 320.1 707 32.4
Pp3c3_25450 Physcomitrium patens HOM05D005966 ORTHO05D007584 1.8e-77 294.7 649 31.4
SMO200G0046 Selaginella moellendorffii HOM05D005966 ORTHO05D007584 2.6e-76 290.8 645 31.0
COL.COLO4_05778 Corchorus olitorius HOM05D005966 ORTHO05D007584 4.4e-76 290.0 387 45.2
FAN08G0676 Fragaria x ananassa HOM05D005966 ORTHO05D007584 6.6e-56 223.0 165 69.1
AagrBONN_evm.TU.Sc2ySwM_117.630 Anthoceros agrestis HOM05D005966 ORTHO05D007584 9.0e-45 186.0 480 29.8
Sc08g0006740 Simmondsia chinensis HOM05D005966 ORTHO05D007584 2.0e-44 184.9 140 70.0
SHI18657 Sapria himalayana HOM05D005966 ORTHO05D007584 5.3e-37 160.2 136 62.5
TAR625G1387 Trochodendron aralioides HOM05D005966 ORTHO05D007584 1.6e-30 138.7 342 33.6
Dinv41526 Davidia involucrata HOM05D006513 ORTHO05D008150 8.2e-30 136.3 153 49.0
Cpa.g.sc75.52 Carica papaya HOM05D005966 ORTHO05D007584 1.8e-29 135.2 100 73.0
CBR_g48370 Chara braunii HOM05D005966 ORTHO05D000048 1.9e-26 125.2 243 37.4
Aqoxy7G02129 Aquilegia oxysepala HOM05D005966 ORTHO05D007584 3.0e-24 117.9 178 44.9
GSVIVG01027692001 Vitis vinifera HOM05D005966 ORTHO05D007584 1.1e-15 89.4 50 82.0
Hma1.2p1_0090F.1_g045710 Hydrangea macrophylla HOM05D005966 ORTHO05D007584 4.1e-13 80.9 110 40.9
CAN.G925.3 Capsicum annuum HOM05D005966 ORTHO05D007584 9.1e-13 79.7 101 41.6
COL.COLO4_05779 Corchorus olitorius HOM05D005966 ORTHO05D007584 1.5e-12 79.0 58 60.3
Lsat_1_v5_gn_8_82580 Lactuca sativa HOM05D005966 ORTHO05D007584 4.2e-10 70.9 49 69.4
CAN.G1289.8 Capsicum annuum HOM05D005966 ORTHO05D007584 1.6e-09 68.9 60 50.0
CDE11G0857 Ceratophyllum demersum HOM05D005966 ORTHO05D007584 8.8e-08 63.2 70 45.7
TAR626G0958 Trochodendron aralioides HOM05D005966 ORTHO05D007584 7.4e-07 60.1 35 82.9
TAR362G1246 Trochodendron aralioides HOM05D005966 ORTHO05D007584 2.8e-06 58.2 38 76.3


User provided reference genes

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