Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G27690 Arabidopsis lyrata HOM05D005820 ORTHO05D007116 0.0e+00 1426.0 742 100.0
Sp6g27470 Schrenkiella parvula HOM05D005820 ORTHO05D007116 0.0e+00 1283.1 736 89.0
AT5G16690 Arabidopsis thaliana HOM05D005820 ORTHO05D007116 0.0e+00 1281.5 704 94.7
Carub.0006s1489 Capsella rubella HOM05D005820 ORTHO05D007116 0.0e+00 1269.6 736 89.3
Thhalv10012783m.g Eutrema salsugineum HOM05D005820 ORTHO05D007116 0.0e+00 1233.8 736 86.0
C09p60450 Brassica napus HOM05D005820 ORTHO05D007116 0.0e+00 1215.3 736 86.4
BraA10t44315Z Brassica rapa HOM05D005820 ORTHO05D007116 0.0e+00 1203.7 737 85.6
CARHR196510 Cardamine hirsuta HOM05D005820 ORTHO05D007116 0.0e+00 1201.4 731 86.6
A10p22530 Brassica napus HOM05D005820 ORTHO05D007116 0.0e+00 1200.7 731 86.0
BolC9t58877H Brassica oleracea HOM05D005820 ORTHO05D007116 0.0e+00 1184.1 790 80.0
Aa31LG11G12940 Aethionema arabicum HOM05D005820 ORTHO05D007116 0.0e+00 1155.2 785 77.5
BcaB08g36827 Brassica carinata HOM05D005820 ORTHO05D007116 5.7e-306 1053.9 754 76.8
THA.LOC104821161 Tarenaya hassleriana HOM05D005820 ORTHO05D007116 1.4e-272 943.0 743 67.3
Atru.chr12.1871 Acer truncatum HOM05D005820 ORTHO05D007116 6.7e-214 748.0 748 53.6
Atru.chr13.1435 Acer truncatum HOM05D005820 ORTHO05D007116 1.3e-212 743.8 749 53.5
Cfa016076 Carpinus fangiana HOM05D005820 ORTHO05D007116 9.1e-211 737.6 742 52.7
CiPaw.05G212600 Carya illinoinensis HOM05D005820 ORTHO05D007116 2.0e-210 736.5 742 53.0
Gorai.003G057900 Gossypium raimondii HOM05D005820 ORTHO05D007116 5.5e-208 728.4 732 53.6
Gohir.D03G055100 Gossypium hirsutum HOM05D005820 ORTHO05D007116 9.4e-208 727.6 732 53.3
Potri.013G077200 Populus trichocarpa HOM05D005820 ORTHO05D007116 2.7e-207 726.1 754 52.7
QL09p020654 Quercus lobata HOM05D005820 ORTHO05D007116 5.7e-205 718.4 755 51.8
TAR633G0012 Trochodendron aralioides HOM05D005820 ORTHO05D007116 3.1e-203 712.6 735 52.1
TWI53G1480 Tripterygium wilfordii HOM05D005820 ORTHO05D007116 2.0e-202 709.9 749 52.2
Duzib106G1003 Durio zibethinus HOM05D005820 ORTHO05D007116 2.9e-201 706.1 735 52.1
Gohir.A02G125300 Gossypium hirsutum HOM05D005820 ORTHO05D007116 1.9e-200 703.4 654 55.7
Nn3g21157 Nelumbo nucifera HOM05D005820 ORTHO05D007116 1.8e-198 696.8 746 50.5
Thecc.05G222900 Theobroma cacao HOM05D005820 ORTHO05D007116 4.0e-198 695.7 712 53.9
CSS0036845 Camellia sinensis var. sinensis HOM05D005820 ORTHO05D007116 8.0e-191 671.4 738 49.3
COL.COLO4_15131 Corchorus olitorius HOM05D005820 ORTHO05D007116 3.4e-189 666.0 750 50.0
TAR365G1123 Trochodendron aralioides HOM05D005820 ORTHO05D007116 4.9e-188 662.1 730 49.7
TAR365G1018 Trochodendron aralioides HOM05D005820 ORTHO05D007116 2.7e-186 656.4 747 49.4
DCAR_020431 Daucus carota HOM05D005820 ORTHO05D007116 3.8e-185 652.5 718 49.2
Haze_00369 Corylus avellana HOM05D005820 ORTHO05D007116 5.0e-185 652.1 811 46.1
CsaV3_5G005010 Cucumis sativus L. HOM05D005820 ORTHO05D007116 3.3e-184 649.4 760 47.5
MELO3C005455.2 Cucumis melo HOM05D005820 ORTHO05D007116 9.5e-184 647.9 760 47.5
Glyma.12G014600 Glycine max HOM05D005820 ORTHO05D007116 6.1e-183 645.2 748 46.7
RcHm_v2.0_Chr1g0384611 Rosa chinensis HOM05D005820 ORTHO05D007116 2.6e-181 639.8 742 47.8
CANSAT54G2180 Cannabis sativa HOM05D005820 ORTHO05D007116 1.7e-180 637.1 742 48.4
Sed0005542 Sechium edule HOM05D005820 ORTHO05D007116 2.9e-180 636.3 762 46.5
Lj3g0016493 Lotus japonicus HOM05D005820 ORTHO05D007116 3.7e-180 636.0 725 48.4
Aqoxy2G01900 Aquilegia oxysepala HOM05D005820 ORTHO05D007116 4.9e-180 635.6 746 46.4
PSO339G0775 Papaver somniferum HOM05D005820 ORTHO05D007116 4.9e-180 635.6 782 46.7
Phvul.011G017500 Phaseolus vulgaris HOM05D005820 ORTHO05D007116 4.1e-179 632.5 750 47.1
PSO384G2364 Papaver somniferum HOM05D005820 ORTHO05D007116 2.0e-178 630.2 813 44.8
FvH4_7g34260 Fragaria vesca HOM05D005820 ORTHO05D007116 7.8e-178 628.2 755 47.0
PSO210G4891 Papaver somniferum HOM05D005820 ORTHO05D007116 5.0e-177 625.5 780 45.6
VMungo1127G1342 Vigna mungo HOM05D005820 ORTHO05D007116 8.6e-177 624.8 757 46.1
Peaxi162Scf00046g02624 Petunia axillaris HOM05D005820 ORTHO05D007116 1.5e-176 624.0 726 48.8
Solyc12g013880.2 Solanum lycopersicum HOM05D005820 ORTHO05D007116 7.3e-176 621.7 731 47.7
FAN01G2368 Fragaria x ananassa HOM05D005820 ORTHO05D007116 1.2e-175 620.9 755 46.8
Sopen12g007200 Solanum pennellii HOM05D005820 ORTHO05D007116 3.6e-175 619.4 729 47.1
ECA232G1869 Erigeron canadensis HOM05D005820 ORTHO05D007116 8.0e-175 618.2 735 45.9
Medtr5g082610 Medicago truncatula HOM05D005820 ORTHO05D007116 2.3e-174 616.7 743 44.3
PGR042G2204 Punica granatum HOM05D005820 ORTHO05D007116 8.9e-174 614.8 715 47.3
MD07G1032700 Malus domestica HOM05D005820 ORTHO05D007116 1.2e-173 614.4 751 46.9
FAN03G2216 Fragaria x ananassa HOM05D005820 ORTHO05D007116 4.4e-173 612.5 765 46.3
Actinidia08766 Actinidia chinensis HOM05D005820 ORTHO05D007116 9.8e-173 611.3 675 49.5
ECA233G1554 Erigeron canadensis HOM05D005820 ORTHO05D007116 2.1e-170 603.6 730 44.8
HanXRQChr15g0492741 Helianthus annuus HOM05D005820 ORTHO05D007116 3.3e-168 596.3 727 44.7
AUR62033087 Chenopodium quinoa HOM05D005820 ORTHO05D007116 5.6e-168 595.5 710 46.5
Prupe.2G329300 Prunus persica HOM05D005820 ORTHO05D007116 1.5e-165 587.4 732 46.2
TPR.G19809 Trifolium pratense HOM05D005820 ORTHO05D007116 3.7e-164 582.8 645 46.8
vmacro06371 Vaccinium macrocarpon HOM05D005820 ORTHO05D007116 3.2e-163 579.7 761 44.3
Cc10_g10830 Coffea canephora HOM05D005820 ORTHO05D007116 4.6e-162 575.9 738 45.0
EL10Ac4g08387 Beta vulgaris HOM05D005820 ORTHO05D007116 2.3e-161 573.5 706 45.8
Lsat_1_v5_gn_9_46201 Lactuca sativa HOM05D005820 ORTHO05D007116 3.0e-161 573.2 738 43.4
EL10Ac2g03131 Beta vulgaris HOM05D005820 ORTHO05D007116 8.6e-161 571.6 678 46.6
MSTRG.19155 Avicennia marina HOM05D005820 ORTHO05D007116 1.1e-160 571.2 738 43.4
ATR0829G080 Amborella trichopoda HOM05D005820 ORTHO05D007116 2.6e-157 560.1 711 44.0
Rhsim03G0224500 Rhododendron simsii HOM05D005820 ORTHO05D007116 2.6e-157 560.1 756 42.7
Manes.08G160700 Manihot esculenta HOM05D005820 ORTHO05D007116 4.4e-157 559.3 612 50.3
Os10g0402200 Oryza sativa ssp. japonica HOM05D005820 ORTHO05D007116 6.4e-156 555.4 729 42.1
Eucgr.A02992 Eucalyptus grandis HOM05D005820 ORTHO05D007116 1.1e-155 554.7 729 42.0
Nitab4.5_0012358g0010 Nicotiana tabacum HOM05D005820 ORTHO05D007116 1.4e-155 554.3 746 43.3
SGA_v2.0_scaffold75G24867 Striga asiatica HOM05D005820 ORTHO05D007116 2.3e-153 547.0 741 42.8
Migut.J00550 Erythranthe guttata HOM05D005820 ORTHO05D007116 6.6e-153 545.4 752 44.0
Zm00001eb031810 Zea mays HOM05D005820 ORTHO05D007116 1.1e-152 544.7 739 41.5
FAN10G1332 Fragaria x ananassa HOM05D005820 ORTHO05D007116 7.3e-152 542.0 680 45.3
HPP92_000954 Vanilla planifolia HOM05D005820 ORTHO05D007116 1.5e-141 507.7 746 39.1
CDE02G0417 Ceratophyllum demersum HOM05D005820 ORTHO05D007116 1.3e-127 461.5 660 40.0
Lalb_Chr01g0000781 Lupinus albus HOM05D005820 ORTHO05D007116 9.0e-126 455.3 580 41.6
ClCG01G004810 Citrullus lanatus HOM05D005820 ORTHO05D007116 7.4e-120 435.6 463 50.8
Psat5g135040 Pisum sativum HOM05D005820 ORTHO05D007116 1.7e-116 424.5 516 43.6
Sc13g0011020 Simmondsia chinensis HOM05D005820 ORTHO05D007116 9.4e-115 418.7 551 44.6
CAN.G103.20 Capsicum annuum HOM05D005820 ORTHO05D007116 4.6e-114 416.4 582 42.4
Nitab4.5_0010710g0030 Nicotiana tabacum HOM05D005820 ORTHO05D007116 4.6e-114 416.4 592 42.1
Ciclev10033588m.g Citrus clementina HOM05D005820 ORTHO05D007116 2.2e-108 397.5 405 53.1
AUR62042764 Chenopodium quinoa HOM05D005820 ORTHO05D007116 5.0e-108 396.4 579 40.9
PSO170G6050 Papaver somniferum HOM05D005820 ORTHO05D007116 3.2e-107 393.7 453 48.3
Hma1.2p1_0419F.1_g149510 Hydrangea macrophylla HOM05D005820 ORTHO05D007116 2.1e-106 391.0 430 49.1
Sabra13G0066100 Salix brachista HOM05D005820 ORTHO05D007116 2.1e-106 391.0 349 57.0
unitig_749.g14271 Utricularia gibba HOM05D005820 ORTHO05D007116 1.1e-102 378.6 732 35.2
Ca_03104_v3 Cicer arietinum L. HOM05D005820 ORTHO05D007116 2.0e-101 374.4 425 47.3
Mapoly0140s0032 Marchantia polymorpha HOM05D005820 ORTHO05D007116 1.8e-94 351.3 810 31.2
AagrBONN_evm.TU.Sc2ySwM_368.2608 Anthoceros agrestis HOM05D005820 ORTHO05D007116 5.3e-94 349.7 677 32.6
arahy.Tifrunner.gnm1.ann1.9S7XN2 Arachis hypogaea HOM05D005820 ORTHO05D007116 7.2e-91 339.3 353 50.4
COL.COLO4_22345 Corchorus olitorius HOM05D005820 ORTHO05D007116 2.7e-90 337.4 369 50.7
SalBow3G3950 Salvia bowleyana HOM05D005820 ORTHO05D007116 9.8e-88 328.9 553 37.8
PGSC0003DMG402015362 Solanum tuberosum HOM05D005820 ORTHO05D007116 4.1e-86 323.6 359 47.9
Pp3c16_7630 Physcomitrium patens HOM05D005820 ORTHO05D007116 1.6e-82 311.6 860 28.0
Hma1.2p1_0419F.1_g149500 Hydrangea macrophylla HOM05D005820 ORTHO05D007116 2.3e-81 307.8 277 57.4
SMO203G0218 Selaginella moellendorffii HOM05D005820 ORTHO05D007116 2.3e-81 307.8 691 30.7
SHI15005 Sapria himalayana HOM05D005820 ORTHO05D007116 4.0e-81 307.0 340 45.9
PGSC0003DMG401015362 Solanum tuberosum HOM05D005820 ORTHO05D007116 2.3e-76 291.2 331 47.4
arahy.Tifrunner.gnm1.ann1.86ZX86 Arachis hypogaea HOM05D005820 ORTHO05D007116 5.0e-76 290.0 370 43.5
MD01G1239300 Malus domestica HOM05D005820 ORTHO05D007116 3.3e-67 260.8 496 35.3
Cpa.g.sc43.140 Carica papaya HOM05D005820 ORTHO05D007116 4.3e-67 260.4 269 53.9
Ciclev10032799m.g Citrus clementina HOM05D005820 ORTHO05D007116 2.0e-61 241.5 197 60.9
Lj3A884T58 Lonicera japonica HOM05D005820 ORTHO05D007116 2.0e-61 241.5 250 52.0
CBR_g52284 Chara braunii HOM05D005820 ORTHO05D007116 5.6e-59 233.4 891 24.5
Lalb_Chr01g0000771 Lupinus albus HOM05D005820 ORTHO05D007116 1.4e-49 202.2 162 59.3
arahy.Tifrunner.gnm1.ann1.CH4JFK Arachis hypogaea HOM05D005820 ORTHO05D007116 2.3e-49 201.4 710 28.5
Cpa.g.sc43.143 Carica papaya HOM05D005820 ORTHO05D007116 2.3e-49 201.4 248 47.2
Oeu046340.1 Olea europaea HOM05D005820 ORTHO05D007116 2.3e-49 201.4 159 63.5
CAN.G824.56 Capsicum annuum HOM05D005820 ORTHO05D007116 1.1e-46 192.6 159 61.0
arahy.Tifrunner.gnm1.ann1.9KL91U Arachis hypogaea HOM05D005820 ORTHO05D007116 7.1e-46 189.9 707 26.9
Lj3A884T57 Lonicera japonica HOM05D005820 ORTHO05D007116 6.0e-45 186.8 276 38.8
Oeu001352.2 Olea europaea HOM05D005820 ORTHO05D007116 1.8e-41 175.3 262 38.2
Nitab4.5_0010710g0040 Nicotiana tabacum HOM05D005820 ORTHO05D007116 2.2e-39 168.3 136 62.5
Hma1.2p1_0419F.1_g149520 Hydrangea macrophylla HOM05D005820 ORTHO05D007116 4.3e-27 127.5 104 54.8
AUR62022348 Chenopodium quinoa HOM05D005820 ORTHO05D007116 4.5e-24 117.5 98 60.2
CAN.G557.3 Capsicum annuum HOM05D005820 ORTHO05D007116 7.1e-22 110.2 149 43.0
Sp6g11530 Schrenkiella parvula HOM05D001244 ORTHO05D001076 1.5e-19 102.4 185 39.5
SEGI_39455 Sequoiadendron giganteum HOM05D005820 ORTHO05D007116 3.3e-19 101.3 163 36.8
SHI15006 Sapria himalayana HOM05D005820 ORTHO05D007116 2.6e-08 65.1 177 31.6
CAN.G159.6 Capsicum annuum HOM05D001691 ORTHO05D007116 3.4e-08 64.7 159 29.6
COL.COLO4_37046 Corchorus olitorius HOM05D005820 ORTHO05D007116 1.7e-07 62.4 34 79.4
CAN.G1793.2 Capsicum annuum HOM05D005820 ORTHO05D007116 5.0e-07 60.8 45 60.0
MCO08G313 Micromonas commoda HOM05D005820 ORTHO05D007116 8.4e-07 60.1 131 33.6


User provided reference genes

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