Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G25060 Arabidopsis lyrata HOM05D006844 ORTHO05D008504 1.1e-268 929.9 675 100.0
CARHR198970 Cardamine hirsuta HOM05D006844 ORTHO05D008504 4.2e-223 778.5 676 88.8
Thhalv10015672m.g Eutrema salsugineum HOM05D006844 ORTHO05D008504 6.1e-214 748.0 479 83.5
Sp6g29690 Schrenkiella parvula HOM05D006844 ORTHO05D008504 4.0e-213 745.3 686 85.9
AT3G46610 Arabidopsis thaliana HOM05D006844 ORTHO05D008504 2.0e-212 743.0 475 84.6
Carub.0005s1288 Capsella rubella HOM05D006844 ORTHO05D008504 1.8e-205 719.9 476 82.6
Aa31LG11G15140 Aethionema arabicum HOM05D006844 ORTHO05D008504 9.2e-194 681.0 477 78.6
BcaB01g06378 Brassica carinata HOM05D006844 ORTHO05D008504 3.5e-193 679.1 470 80.2
BcaB01g05117 Brassica carinata HOM05D006844 ORTHO05D008504 4.9e-171 605.5 472 72.9
C03p07580 Brassica napus HOM05D006844 ORTHO05D008504 4.9e-171 605.5 472 72.9
BolC3t13259H Brassica oleracea HOM05D006844 ORTHO05D008504 4.2e-170 602.4 473 72.9
THA.LOC104821106 Tarenaya hassleriana HOM05D006844 ORTHO05D008504 3.0e-168 596.3 480 70.0
BraA03t09988Z Brassica rapa HOM05D006844 ORTHO05D008504 1.6e-166 590.5 472 70.6
A03p06560 Brassica napus HOM05D006844 ORTHO05D008504 5.3e-165 585.5 472 70.3
BcaB01g06331 Brassica carinata HOM05D006844 ORTHO05D008504 4.3e-143 512.7 471 62.2
Prupe.2G095300 Prunus persica HOM05D006844 ORTHO05D008504 2.5e-138 496.9 518 50.6
Cfa007302 Carpinus fangiana HOM05D006844 ORTHO05D008504 1.1e-133 481.5 510 55.1
TAR622G0321 Trochodendron aralioides HOM05D006844 ORTHO05D008504 1.5e-132 477.6 533 52.9
Haze_14791 Corylus avellana HOM05D006844 ORTHO05D008504 1.7e-131 474.2 499 55.9
Thecc.04G024500 Theobroma cacao HOM05D006844 ORTHO05D008504 4.2e-130 469.5 501 55.7
Gohir.D04G080600 Gossypium hirsutum HOM05D006844 ORTHO05D008504 2.6e-127 460.3 501 56.3
Gorai.012G091600 Gossypium raimondii HOM05D006844 ORTHO05D008504 2.6e-127 460.3 501 56.3
FvH4_7g06820 Fragaria vesca HOM05D006844 ORTHO05D008504 3.3e-127 459.9 494 55.3
TWI12G0359 Tripterygium wilfordii HOM05D006844 ORTHO05D008504 2.8e-126 456.8 523 52.2
Manes.17G108800 Manihot esculenta HOM05D006844 ORTHO05D008504 4.8e-126 456.1 508 53.5
Nn4g22496 Nelumbo nucifera HOM05D006844 ORTHO05D008504 2.4e-125 453.8 521 54.3
Duzib147G1239 Durio zibethinus HOM05D006844 ORTHO05D008504 6.9e-125 452.2 501 55.1
QL02p073443 Quercus lobata HOM05D006844 ORTHO05D008504 4.5e-124 449.5 515 52.6
COL.COLO4_29236 Corchorus olitorius HOM05D006844 ORTHO05D008504 1.7e-123 447.6 505 55.4
CAN.G473.42 Capsicum annuum HOM05D006844 ORTHO05D008504 2.9e-123 446.8 387 58.1
MD17G1020100 Malus domestica HOM05D006844 ORTHO05D008504 3.8e-123 446.4 512 51.4
Atru.chr6.2466 Acer truncatum HOM05D006844 ORTHO05D008504 5.0e-123 446.0 505 52.7
Dinv33400 Davidia involucrata HOM05D006844 ORTHO05D008504 5.0e-123 446.0 436 54.1
Ciclev10014357m.g Citrus clementina HOM05D006844 ORTHO05D008504 6.5e-123 445.7 524 51.9
MD09G1019500 Malus domestica HOM05D006844 ORTHO05D008504 6.5e-123 445.7 514 52.1
TAR374G0379 Trochodendron aralioides HOM05D006844 ORTHO05D008504 1.1e-122 444.9 370 67.0
Potri.017G070800 Populus trichocarpa HOM05D006844 ORTHO05D008504 4.2e-122 443.0 519 51.6
Sabra06G0144800 Salix brachista HOM05D006844 ORTHO05D008504 4.2e-122 443.0 519 51.8
Sabra17G0063000 Salix brachista HOM05D006844 ORTHO05D008504 4.2e-122 443.0 519 51.8
MBI13_g29568_MAGBIO Magnolia biondii HOM05D006844 ORTHO05D008504 9.4e-122 441.8 509 53.6
CiPaw.03G048400 Carya illinoinensis HOM05D006844 ORTHO05D008504 2.7e-121 440.3 518 51.5
AUR62035998 Chenopodium quinoa HOM05D006844 ORTHO05D008504 8.8e-120 435.3 511 50.1
FAN01G2612 Fragaria x ananassa HOM05D006844 ORTHO05D008504 4.8e-118 429.5 402 59.5
RcHm_v2.0_Chr1g0336521 Rosa chinensis HOM05D006844 ORTHO05D008504 4.8e-118 429.5 481 53.4
Eucgr.J02268 Eucalyptus grandis HOM05D006844 ORTHO05D008504 1.8e-117 427.6 488 53.5
SGA_v2.0_scaffold135G34928 Striga asiatica HOM05D006844 ORTHO05D008504 1.2e-116 424.9 360 58.3
FAN03G0177 Fragaria x ananassa HOM05D006844 ORTHO05D008504 7.7e-116 422.2 404 58.9
PGSC0003DMG400012620 Solanum tuberosum HOM05D006844 ORTHO05D008504 2.2e-115 420.6 354 64.7
MSTRG.24057 Avicennia marina HOM05D006844 ORTHO05D008504 1.1e-114 418.3 540 48.9
CANSAT64G2991 Cannabis sativa HOM05D006844 ORTHO05D008504 1.2e-113 414.8 513 51.5
Cc07_g00220 Coffea canephora HOM05D006844 ORTHO05D008504 1.6e-113 414.5 527 48.8
Sc07g0004300 Simmondsia chinensis HOM05D006844 ORTHO05D008504 1.6e-113 414.5 513 49.5
FAN10G3353 Fragaria x ananassa HOM05D006844 ORTHO05D008504 2.7e-113 413.7 404 57.9
Nitab4.5_0001031g0200 Nicotiana tabacum HOM05D006844 ORTHO05D008504 6.1e-113 412.5 354 65.5
CSS0048025 Camellia sinensis var. sinensis HOM05D006844 ORTHO05D008504 4.0e-112 409.8 521 49.7
Nitab4.5_0000935g0090 Nicotiana tabacum HOM05D006844 ORTHO05D008504 6.7e-112 409.1 353 58.9
Sopen02g038250 Solanum pennellii HOM05D006844 ORTHO05D008504 8.8e-112 408.7 377 62.3
CSS0042583 Camellia sinensis var. sinensis HOM05D006844 ORTHO05D008504 1.2e-111 408.3 521 49.5
Hma1.2p1_0818F.1_g223470 Hydrangea macrophylla HOM05D006844 ORTHO05D008504 1.2e-111 408.3 353 63.5
Peaxi162Scf00420g00214 Petunia axillaris HOM05D006844 ORTHO05D008504 5.7e-111 406.0 379 59.9
Migut.H00039 Erythranthe guttata HOM05D006844 ORTHO05D008504 1.3e-110 404.8 425 54.1
Hma1.2p1_1484F.1_g286480 Hydrangea macrophylla HOM05D006844 ORTHO05D008504 1.3e-110 404.8 520 48.3
PGR083G0468 Punica granatum HOM05D006844 ORTHO05D008504 2.2e-110 404.1 373 59.8
PSO478G2097 Papaver somniferum HOM05D006844 ORTHO05D008504 4.8e-110 402.9 354 60.2
Sed0025706 Sechium edule HOM05D006844 ORTHO05D008504 6.3e-110 402.5 348 63.2
Ah.10g033120 Amaranthus hybridus HOM05D001127 ORTHO05D002230 8.2e-110 402.1 510 50.6
PSO017G3485 Papaver somniferum HOM05D006844 ORTHO05D008504 1.4e-109 401.4 431 53.6
MELO3C014826.2 Cucumis melo HOM05D006844 ORTHO05D008504 4.1e-109 399.8 348 64.9
AUR62041622 Chenopodium quinoa HOM05D006844 ORTHO05D008504 7.0e-109 399.1 512 47.7
arahy.Tifrunner.gnm1.ann1.QHJM8I Arachis hypogaea HOM05D006844 ORTHO05D008504 2.7e-108 397.1 348 62.9
Lj1g0000789 Lotus japonicus HOM05D006844 ORTHO05D008504 7.7e-108 395.6 455 51.2
vmacro05902 Vaccinium macrocarpon HOM05D006844 ORTHO05D008504 7.7e-108 395.6 397 55.9
ClCG05G013040 Citrullus lanatus HOM05D006844 ORTHO05D008504 1.3e-107 394.8 433 53.3
SalBow1G4663 Salvia bowleyana HOM05D006844 ORTHO05D008504 1.7e-107 394.4 434 52.8
Aqoxy3G01340 Aquilegia oxysepala HOM05D006844 ORTHO05D008504 8.5e-107 392.1 521 49.3
Rhsim10G0012800 Rhododendron simsii HOM05D006844 ORTHO05D008504 1.5e-106 391.3 530 49.1
HanXRQChr07g0199131 Helianthus annuus HOM05D006844 ORTHO05D008504 7.2e-106 389.0 476 49.6
Hund11892 Selenicereus undatus HOM05D006844 ORTHO05D008504 7.2e-106 389.0 344 61.6
ECA238G2031 Erigeron canadensis HOM05D004726 ORTHO05D005986 2.1e-105 387.5 355 61.7
DCAR_011279 Daucus carota HOM05D006844 ORTHO05D008504 2.7e-105 387.1 390 56.4
ATR0824G256 Amborella trichopoda HOM05D006844 ORTHO05D008504 4.0e-104 383.3 352 65.1
Gohir.A05G342700 Gossypium hirsutum HOM05D006844 ORTHO05D008504 2.0e-103 380.9 322 67.7
vmacro05904 Vaccinium macrocarpon HOM05D006844 ORTHO05D008504 9.8e-103 378.6 531 47.5
Hma1.2p1_1484F.1_g286470 Hydrangea macrophylla HOM05D006844 ORTHO05D008504 6.3e-102 375.9 507 46.9
Hma1.2p1_1484F.1_g286476 Hydrangea macrophylla HOM05D006844 ORTHO05D008504 6.3e-102 375.9 507 46.9
Lalb_Chr14g0362981 Lupinus albus HOM05D006844 ORTHO05D008504 1.8e-101 374.4 374 58.3
Ca_03833_v3 Cicer arietinum L. HOM05D006844 ORTHO05D008504 5.4e-101 372.9 353 60.6
CsaV3_3G027490 Cucumis sativus L. HOM05D006844 ORTHO05D008504 9.1e-101 372.1 322 64.9
Glyma.16G066300 Glycine max HOM05D006844 ORTHO05D008504 2.0e-100 370.9 356 59.8
Solyc02g093620.2 Solanum lycopersicum HOM05D006844 ORTHO05D008504 4.5e-100 369.8 312 65.4
Actinidia36147 Actinidia chinensis HOM05D006844 ORTHO05D008504 1.1e-98 365.2 376 58.0
Lsat_1_v5_gn_2_93460 Lactuca sativa HOM05D006844 ORTHO05D008504 5.5e-98 362.8 312 63.8
VMungo1080G0705 Vigna mungo HOM05D006844 ORTHO05D008504 1.6e-97 361.3 356 58.1
Phvul.008G145600 Phaseolus vulgaris HOM05D006844 ORTHO05D008504 2.8e-97 360.5 356 58.7
Lj7P604T32 Lonicera japonica HOM05D006844 ORTHO05D008504 1.2e-95 355.1 298 66.4
CDE09G1288 Ceratophyllum demersum HOM05D006844 ORTHO05D008504 4.4e-95 353.2 374 56.4
Glyma.19G080500 Glycine max HOM05D006844 ORTHO05D008504 4.4e-95 353.2 354 57.6
HPP92_010824 Vanilla planifolia HOM05D006844 ORTHO05D008504 2.8e-94 350.5 368 54.6
Psat3g169440 Pisum sativum HOM05D006844 ORTHO05D008504 1.8e-93 347.8 353 55.8
CDE02G4692 Ceratophyllum demersum HOM05D006844 ORTHO05D008504 7.0e-93 345.9 351 58.1
TPR.G1077 Trifolium pratense HOM05D006844 ORTHO05D008504 7.8e-92 342.4 338 57.1
Os12g0283900 Oryza sativa ssp. japonica HOM05D006844 ORTHO05D008504 5.0e-91 339.7 356 57.6
Zm00001eb273000 Zea mays HOM05D006844 ORTHO05D008504 3.2e-69 267.3 247 60.7
Oeu023834.1 Olea europaea HOM05D006844 ORTHO05D008504 2.4e-64 251.1 276 48.2
Hma1.2p1_0818F.1_g223460 Hydrangea macrophylla HOM05D006844 ORTHO05D008504 6.0e-60 236.5 253 49.4
GSVIVG01003980001 Vitis vinifera HOM05D006844 ORTHO05D008504 3.2e-53 214.2 423 37.1
Pp3c26_10760 Physcomitrium patens HOM05D006844 ORTHO05D008504 6.4e-46 189.9 346 38.2
AagrBONN_evm.TU.Sc2ySwM_117.3382 Anthoceros agrestis HOM05D006844 ORTHO05D008504 1.3e-33 149.1 363 33.9
Mapoly0038s0061 Marchantia polymorpha HOM05D006844 ORTHO05D008504 4.9e-30 137.1 349 34.7
EL10Ac2g03526 Beta vulgaris HOM05D006844 ORTHO05D008504 5.1e-27 127.1 220 46.4
AT5G14350 Arabidopsis thaliana HOM05D006844 ORTHO05D008504 5.3e-24 117.1 202 40.6
BcaB01g05118 Brassica carinata HOM05D006844 ORTHO05D008504 6.1e-20 103.6 124 46.8
SMO367G0130 Selaginella moellendorffii HOM05D006844 ORTHO05D008504 3.1e-16 91.3 128 39.8
AUR62025550 Chenopodium quinoa HOM05D006844 ORTHO05D008504 7.9e-12 76.6 43 74.4
vmacro05905 Vaccinium macrocarpon HOM05D006844 ORTHO05D008504 3.1e-08 64.7 42 66.7
AT5G25630 Arabidopsis thaliana HOM05D003689 ORTHO05D003950 2.2e-06 58.5 106 34.9
CBR_g38540 Chara braunii HOM05D001779 ORTHO05D001753 2.2e-06 58.5 142 26.8
Sp2g21900 Schrenkiella parvula HOM05D003689 ORTHO05D003950 3.8e-06 57.8 105 34.3


User provided reference genes

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