Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G24930 Arabidopsis lyrata HOM05D004649 ORTHO05D005446 2.6e-226 788.5 430 100.0
AT5G14250 Arabidopsis thaliana HOM05D004649 ORTHO05D005446 3.7e-212 741.5 430 87.7
Carub.0006s1245 Capsella rubella HOM05D004649 ORTHO05D005446 8.4e-201 703.7 426 83.3
Thhalv10013615m.g Eutrema salsugineum HOM05D004649 ORTHO05D005446 2.5e-192 675.6 430 79.5
Sp6g29780 Schrenkiella parvula HOM05D004649 ORTHO05D005446 4.2e-192 674.9 430 80.5
BcaNung03172 Brassica carinata HOM05D004649 ORTHO05D005446 6.7e-190 667.5 430 79.1
BraA02t05210Z Brassica rapa HOM05D004649 ORTHO05D005446 6.3e-188 661.0 391 84.1
A02p02400 Brassica napus HOM05D005656 ORTHO05D007094 8.2e-188 660.6 390 84.1
BcaC03g13505 Brassica carinata HOM05D004649 ORTHO05D005446 3.1e-187 658.7 392 84.4
BolC2t06607H Brassica oleracea HOM05D005656 ORTHO05D005446 4.1e-187 658.3 391 84.4
C02p06640 Brassica napus HOM05D004649 ORTHO05D005446 1.2e-186 656.8 391 84.4
Aa31LG11G15040 Aethionema arabicum HOM05D004649 ORTHO05D005446 1.0e-185 653.7 426 79.1
BraA03t09983Z Brassica rapa HOM05D004649 ORTHO05D005446 2.3e-182 642.5 426 77.5
BcaB01g06336 Brassica carinata HOM05D004649 ORTHO05D005446 3.0e-182 642.1 426 77.0
BcaB08g36970 Brassica carinata HOM05D004649 ORTHO05D005446 5.1e-182 641.3 426 77.5
A03p06510 Brassica napus HOM05D004649 ORTHO05D005446 5.1e-182 641.3 426 77.5
A10p24220 Brassica napus HOM05D005656 ORTHO05D007094 2.0e-178 629.4 425 75.5
BcaC04g19049 Brassica carinata HOM05D005656 ORTHO05D007094 7.7e-178 627.5 386 81.3
C09p62910 Brassica napus HOM05D005656 ORTHO05D007094 7.7e-178 627.5 386 81.3
BolC9t59128H Brassica oleracea HOM05D005656 ORTHO05D007094 7.7e-178 627.5 386 81.3
CARHR199090 Cardamine hirsuta HOM05D004649 ORTHO05D005446 1.3e-177 626.7 435 81.4
BraA10t44487Z Brassica rapa HOM05D005656 ORTHO05D007094 8.5e-177 624.0 425 74.8
THA.LOC104821114 Tarenaya hassleriana HOM05D004649 ORTHO05D005446 5.0e-169 598.2 426 71.4
Duzib264G0046 Durio zibethinus HOM05D004649 ORTHO05D005446 4.7e-151 538.5 426 65.7
Thecc.04G029900 Theobroma cacao HOM05D004649 ORTHO05D005446 1.5e-149 533.5 423 65.0
Atru.chr6.2512 Acer truncatum HOM05D004649 ORTHO05D005446 4.4e-149 531.9 381 70.3
Ciclev10015345m.g Citrus clementina HOM05D004649 ORTHO05D005446 7.5e-149 531.2 391 68.8
CSS0030171 Camellia sinensis var. sinensis HOM05D004649 ORTHO05D005446 9.8e-149 530.8 381 70.9
CSS0047966 Camellia sinensis var. sinensis HOM05D004649 ORTHO05D005446 9.8e-149 530.8 381 70.9
Prupe.3G302400 Prunus persica HOM05D004649 ORTHO05D005446 9.8e-149 530.8 381 70.6
CANSAT64G0679 Cannabis sativa HOM05D004649 ORTHO05D005446 6.3e-148 528.1 426 65.0
Gorai.012G088900 Gossypium raimondii HOM05D004649 ORTHO05D005446 6.3e-148 528.1 426 65.0
Dinv33366 Davidia involucrata HOM05D004649 ORTHO05D005446 1.4e-147 526.9 426 65.0
Gohir.D04G079000 Gossypium hirsutum HOM05D004649 ORTHO05D005446 3.1e-147 525.8 381 70.6
TWI36G0899 Tripterygium wilfordii HOM05D004649 ORTHO05D005446 3.1e-147 525.8 381 69.8
Gohir.A05G340700 Gossypium hirsutum HOM05D004649 ORTHO05D005446 9.2e-147 524.2 426 64.6
vmacro05936 Vaccinium macrocarpon HOM05D004649 ORTHO05D005446 1.6e-146 523.5 391 67.8
Dinv25679 Davidia involucrata HOM05D004649 ORTHO05D005446 3.5e-146 522.3 383 70.2
Manes.17G106100 Manihot esculenta HOM05D004649 ORTHO05D005446 1.3e-145 520.4 381 69.0
QL02p072453 Quercus lobata HOM05D004649 ORTHO05D005446 2.9e-145 519.2 425 63.5
Gohir.A09G034200 Gossypium hirsutum HOM05D004649 ORTHO05D005446 6.6e-145 518.1 390 67.9
Rhsim10G0008900 Rhododendron simsii HOM05D004649 ORTHO05D005446 6.6e-145 518.1 383 68.1
Gorai.006G040000 Gossypium raimondii HOM05D004649 ORTHO05D005446 1.1e-144 517.3 381 68.8
MD17G1015500 Malus domestica HOM05D004649 ORTHO05D005446 1.1e-144 517.3 381 68.5
PGR142G2348 Punica granatum HOM05D004649 ORTHO05D005446 1.9e-144 516.5 390 68.7
GSVIVG01001824001 Vitis vinifera HOM05D004649 ORTHO05D005446 1.9e-144 516.5 381 68.8
arahy.Tifrunner.gnm1.ann1.2RTQ1W Arachis hypogaea HOM05D004649 ORTHO05D005446 2.5e-144 516.2 393 68.4
MELO3C008213.2 Cucumis melo HOM05D004649 ORTHO05D005446 2.5e-144 516.2 383 69.5
RcHm_v2.0_Chr2g0174731 Rosa chinensis HOM05D004649 ORTHO05D005446 4.3e-144 515.4 381 67.7
MSTRG.15559 Avicennia marina HOM05D004649 ORTHO05D005446 7.3e-144 514.6 391 66.5
Cpa.g.sc130.9 Carica papaya HOM05D004649 ORTHO05D005446 7.3e-144 514.6 426 63.8
MD09G1015400 Malus domestica HOM05D004649 ORTHO05D005446 7.3e-144 514.6 381 68.2
Glyma.05G075400 Glycine max HOM05D004649 ORTHO05D005446 9.5e-144 514.2 381 68.8
Nitab4.5_0000559g0250 Nicotiana tabacum HOM05D004649 ORTHO05D005446 1.2e-143 513.8 383 67.6
TAR371G0838 Trochodendron aralioides HOM05D004649 ORTHO05D005446 1.2e-143 513.8 383 68.7
CiPaw.04G034500 Carya illinoinensis HOM05D004649 ORTHO05D005446 2.1e-143 513.1 387 67.4
Potri.001G334200 Populus trichocarpa HOM05D004649 ORTHO05D005446 3.6e-143 512.3 381 68.5
Sopen02g038570 Solanum pennellii HOM05D004649 ORTHO05D005446 8.0e-143 511.1 383 66.3
CsaV3_6G001150 Cucumis sativus L. HOM05D004649 ORTHO05D005446 1.0e-142 510.8 383 68.4
Actinidia05924 Actinidia chinensis HOM05D004649 ORTHO05D005446 3.1e-142 509.2 382 68.6
VMungo1080G0439 Vigna mungo HOM05D004649 ORTHO05D005446 3.1e-142 509.2 381 68.0
Migut.K01446 Erythranthe guttata HOM05D004649 ORTHO05D005446 5.2e-142 508.4 381 68.2
Solyc02g093920.2 Solanum lycopersicum HOM05D004649 ORTHO05D005446 1.2e-141 507.3 383 65.8
Eucgr.I01664 Eucalyptus grandis HOM05D004649 ORTHO05D005446 2.0e-141 506.5 367 70.0
PGSC0003DMG400020222 Solanum tuberosum HOM05D004649 ORTHO05D005446 2.0e-141 506.5 383 65.5
CAN.G1965.13 Capsicum annuum HOM05D004649 ORTHO05D005446 4.4e-141 505.4 383 66.1
arahy.Tifrunner.gnm1.ann1.B3K3FC Arachis hypogaea HOM05D004649 ORTHO05D005446 7.5e-141 504.6 400 66.5
CAN.G473.77 Capsicum annuum HOM05D004649 ORTHO05D005446 7.5e-141 504.6 384 65.9
FAN09G0187 Fragaria x ananassa HOM05D004649 ORTHO05D005446 7.5e-141 504.6 381 65.9
Phvul.004G055700 Phaseolus vulgaris HOM05D004649 ORTHO05D005446 7.5e-141 504.6 381 67.5
Glyma.19G075700 Glycine max HOM05D004649 ORTHO05D005446 9.8e-141 504.2 381 67.7
Duzib147G0539 Durio zibethinus HOM05D004649 ORTHO05D005446 1.7e-140 503.4 381 69.0
Cc07_g00570 Coffea canephora HOM05D004649 ORTHO05D005446 2.9e-140 502.7 383 66.8
HanXRQChr14g0450901 Helianthus annuus HOM05D004649 ORTHO05D005446 2.9e-140 502.7 381 66.7
FvH4_6g52990 Fragaria vesca HOM05D004649 ORTHO05D005446 6.4e-140 501.5 381 65.6
SGA_v2.0_scaffold154G37160 Striga asiatica HOM05D004649 ORTHO05D005446 6.4e-140 501.5 390 65.4
Lalb_Chr02g0157841 Lupinus albus HOM05D004649 ORTHO05D005446 8.3e-140 501.1 383 66.3
FAN02G2492 Fragaria x ananassa HOM05D004649 ORTHO05D005446 1.1e-139 500.7 381 65.4
Nitab4.5_0001031g0020 Nicotiana tabacum HOM05D004649 ORTHO05D005446 3.2e-139 499.2 383 65.0
DCAR_011306 Daucus carota HOM05D004649 ORTHO05D005446 5.4e-139 498.4 427 60.7
Nitab4.5_0006819g0030 Nicotiana tabacum HOM05D004649 ORTHO05D005446 5.4e-139 498.4 390 65.4
AUR62033709 Chenopodium quinoa HOM05D004649 ORTHO05D005446 2.0e-138 496.5 381 65.4
AUR62036815 Chenopodium quinoa HOM05D004649 ORTHO05D005446 2.0e-138 496.5 381 65.6
Ca_04417_v3 Cicer arietinum L. HOM05D004649 ORTHO05D005446 2.0e-138 496.5 384 66.9
Gohir.D09G035100 Gossypium hirsutum HOM05D004649 ORTHO05D005446 3.5e-138 495.7 381 66.7
Lsat_1_v5_gn_2_93941 Lactuca sativa HOM05D004649 ORTHO05D005446 1.3e-137 493.8 383 65.5
COL.COLO4_08766 Corchorus olitorius HOM05D004649 ORTHO05D005446 2.3e-137 493.0 381 68.2
Medtr6g023350 Medicago truncatula HOM05D004649 ORTHO05D005446 5.6e-136 488.4 393 64.6
CiPaw.03G052200 Carya illinoinensis HOM05D004649 ORTHO05D005446 9.5e-136 487.6 381 65.6
Aqoxy5G03494 Aquilegia oxysepala HOM05D004649 ORTHO05D005446 2.8e-135 486.1 381 63.5
TPR.G7524 Trifolium pratense HOM05D004649 ORTHO05D005446 3.6e-135 485.7 380 65.5
BcaB01g05123 Brassica carinata HOM05D004649 ORTHO05D005446 1.1e-134 484.2 355 72.4
Lj1g0022023 Lotus japonicus HOM05D004649 ORTHO05D005446 2.3e-134 483.0 381 65.6
HanXRQChr07g0198311 Helianthus annuus HOM05D004649 ORTHO05D005446 4.0e-134 482.3 426 58.9
Sed0002339 Sechium edule HOM05D004649 ORTHO05D005446 1.5e-133 480.3 383 65.8
ECA238G0199 Erigeron canadensis HOM05D004649 ORTHO05D005446 7.5e-133 478.0 383 63.2
ClCG11G006900 Citrullus lanatus HOM05D004649 ORTHO05D005446 1.3e-132 477.2 417 61.9
FAN05G5354 Fragaria x ananassa HOM05D004649 ORTHO05D005446 1.9e-131 473.4 423 58.9
CDE09G0552 Ceratophyllum demersum HOM05D004649 ORTHO05D005446 4.1e-131 472.2 381 62.7
C03p07530 Brassica napus HOM05D004649 ORTHO05D005446 1.2e-130 470.7 359 71.3
Peaxi162Scf00700g00129 Petunia axillaris HOM05D004649 ORTHO05D005446 3.3e-128 462.6 380 63.9
Psat1g084880 Pisum sativum HOM05D004649 ORTHO05D005446 7.3e-128 461.5 393 62.3
PSO782G5348 Papaver somniferum HOM05D004649 ORTHO05D005446 3.6e-127 459.1 383 62.4
Gohir.D10G084700 Gossypium hirsutum HOM05D004649 ORTHO05D005446 1.4e-126 457.2 426 56.8
HPP92_017768 Vanilla planifolia HOM05D004649 ORTHO05D005446 1.5e-125 453.8 378 59.8
Manes.15G158000 Manihot esculenta HOM05D004649 ORTHO05D005446 4.4e-125 452.2 312 73.7
Haze_14832 Corylus avellana HOM05D004649 ORTHO05D005446 1.1e-123 447.6 414 58.5
Peaxi162Scf00420g00411 Petunia axillaris HOM05D004649 ORTHO05D005446 1.9e-123 446.8 391 60.9
Potri.017G066300 Populus trichocarpa HOM05D004649 ORTHO05D005446 3.2e-123 446.0 325 70.2
Hund06757 Selenicereus undatus HOM05D004649 ORTHO05D005446 4.1e-123 445.7 381 61.9
Gorai.011G092400 Gossypium raimondii HOM05D004649 ORTHO05D005446 7.1e-123 444.9 426 57.5
DCAR_015086 Daucus carota HOM05D004649 ORTHO05D005446 1.9e-120 436.8 388 56.7
Nitab4.5_0002887g0140 Nicotiana tabacum HOM05D004649 ORTHO05D005446 1.9e-120 436.8 384 59.6
Nn2g10549 Nelumbo nucifera HOM05D004649 ORTHO05D005446 5.6e-120 435.3 383 60.8
Sc07g0004210 Simmondsia chinensis HOM05D004649 ORTHO05D005446 1.6e-119 433.7 341 65.1
Lj7C608T4 Lonicera japonica HOM05D004649 ORTHO05D005446 2.1e-119 433.3 381 60.9
Os08g0119000 Oryza sativa ssp. japonica HOM05D004649 ORTHO05D005446 2.6e-117 426.4 381 57.5
Zm00001eb261210 Zea mays HOM05D004649 ORTHO05D005446 2.6e-117 426.4 382 57.9
Aqoxy3G01472 Aquilegia oxysepala HOM05D004649 ORTHO05D005446 1.7e-116 423.7 381 59.3
ATR0124G048 Amborella trichopoda HOM05D004649 ORTHO05D005446 8.4e-116 421.4 361 59.8
unitig_52.g17652 Utricularia gibba HOM05D004649 ORTHO05D005446 2.7e-114 416.4 392 58.7
Sed0000018 Sechium edule HOM05D004649 ORTHO05D005446 1.1e-112 411.0 383 58.2
Mapoly0005s0216 Marchantia polymorpha HOM05D004649 ORTHO05D005446 1.2e-106 391.0 383 53.5
SMO351G0195 Selaginella moellendorffii HOM05D004649 ORTHO05D005446 6.6e-105 385.2 383 53.3
Pp3c11_20060 Physcomitrium patens HOM05D004649 ORTHO05D005446 1.1e-104 384.4 384 51.3
CDE02G4363 Ceratophyllum demersum HOM05D004649 ORTHO05D005446 1.9e-104 383.6 406 53.7
AagrBONN_evm.TU.Sc2ySwM_368.1057 Anthoceros agrestis HOM05D004649 ORTHO05D005446 7.1e-99 365.2 409 49.1
PSO017G3153 Papaver somniferum HOM05D004649 ORTHO05D005446 4.3e-96 355.9 355 54.9
C09p61600 Brassica napus HOM05D004649 ORTHO05D005446 9.6e-96 354.8 325 61.8
EL10As11g23981 Beta vulgaris HOM05D004649 ORTHO05D005446 3.7e-95 352.8 352 55.7
Sabra16G0215300 Salix brachista HOM05D004649 ORTHO05D005446 3.2e-91 339.7 242 72.3
CBR_g75710 Chara braunii HOM05D004649 ORTHO05D005446 1.2e-90 337.8 385 48.3
Hma1.2p1_0571F.1_g180750 Hydrangea macrophylla HOM05D004649 ORTHO05D005446 7.9e-90 335.1 240 72.9
BcaC04g18970 Brassica carinata HOM05D004649 ORTHO05D005446 7.1e-83 312.0 359 54.3
Nn3g16527 Nelumbo nucifera HOM05D004649 ORTHO05D005446 1.9e-80 303.9 241 62.2
A03p07400 Brassica napus HOM05D004649 ORTHO05D005446 2.8e-79 300.1 195 80.5
Zm00001eb173540 Zea mays HOM05D004649 ORTHO05D005446 1.3e-76 291.2 278 55.0
BolC9t59028H Brassica oleracea HOM05D004649 ORTHO05D005446 3.6e-74 283.1 306 56.2
Actinidia36180 Actinidia chinensis HOM05D004649 ORTHO05D005446 3.9e-73 279.6 382 45.8
BraA03t10063Z Brassica rapa HOM05D004649 ORTHO05D005446 4.8e-71 272.7 194 73.2
Cre16.g671100 Chlamydomonas reinhardtii HOM05D004649 ORTHO05D005446 8.8e-65 251.9 392 39.3
Gohir.A01G185660 Gossypium hirsutum HOM05D004649 ORTHO05D005446 7.7e-61 238.8 214 59.8
PRCOL_00002547 Prasinoderma coloniale HOM05D004649 ORTHO05D005446 4.2e-59 233.0 333 41.4
CAN.G473.64 Capsicum annuum HOM05D004649 ORTHO05D005446 2.6e-48 197.2 176 61.9
BolC3t13254H Brassica oleracea HOM05D004649 ORTHO05D005446 7.0e-46 189.1 106 89.6
SEGI_26946 Sequoiadendron giganteum HOM05D004649 ORTHO05D005446 1.2e-37 161.8 139 56.8
BcaB08g36975 Brassica carinata HOM05D005656 ORTHO05D007094 1.2e-32 145.2 75 93.3
MCO12G022 Micromonas commoda HOM05D004649 ORTHO05D005446 1.2e-32 145.2 332 30.4
Sabra07G0059200 Salix brachista HOM05D004649 ORTHO05D005446 1.6e-29 134.8 205 41.0
Sabra07G0059100 Salix brachista HOM05D005682 ORTHO05D007050 1.9e-27 127.9 309 32.0
FAN09G3197 Fragaria x ananassa HOM05D004649 ORTHO05D005446 3.0e-20 104.0 80 55.0
QL12p000006 Quercus lobata HOM05D004649 ORTHO05D005446 1.8e-17 94.7 78 60.3
QL12p000135 Quercus lobata HOM05D004649 ORTHO05D005446 1.8e-17 94.7 78 60.3
Duzib268G1750 Durio zibethinus HOM05D004649 ORTHO05D005446 3.1e-17 94.0 125 43.2
C03p08440 Brassica napus HOM05D002468 ORTHO05D005371 7.1e-14 82.8 49 79.6
BolC3t13348H Brassica oleracea HOM05D002468 ORTHO05D005371 7.1e-14 82.8 49 79.6
Oeu042415.1 Olea europaea HOM05D004649 ORTHO05D005446 1.3e-12 78.6 81 56.8
Aqoxy5G03476 Aquilegia oxysepala HOM05D004649 ORTHO05D005446 6.2e-10 69.7 54 61.1
FvH4_2g01181 Fragaria vesca HOM05D000564 ORTHO05D005446 1.8e-09 68.2 53 69.8


User provided reference genes

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