Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G22430 Arabidopsis lyrata HOM05D002493 ORTHO05D003175 7.7e-67 256.9 122 100.0
AL6G14970 Arabidopsis lyrata HOM05D002493 ORTHO05D003175 5.1e-34 147.9 78 89.7
AT5G05140 Arabidopsis thaliana HOM05D002493 ORTHO05D003175 3.4e-30 135.2 79 86.1
Thhalv10013510m.g Eutrema salsugineum HOM05D002493 ORTHO05D003175 2.2e-29 132.5 81 84.0
AL8G15170 Arabidopsis lyrata HOM05D002493 ORTHO05D003175 3.8e-29 131.7 67 91.0
Sp6g37700 Schrenkiella parvula HOM05D002493 ORTHO05D003175 1.4e-28 129.8 83 80.7
Carub.0006s0407 Capsella rubella HOM05D002493 ORTHO05D003175 1.3e-26 123.2 82 73.2
CARHR208120 Cardamine hirsuta HOM05D002493 ORTHO05D003175 4.4e-22 108.2 82 74.4
A10p31030 Brassica napus HOM05D002493 ORTHO05D003175 1.7e-18 96.3 78 62.8
BraA10t45148Z Brassica rapa HOM05D002493 ORTHO05D003175 1.7e-18 96.3 78 62.8
THA.LOC104823166 Tarenaya hassleriana HOM05D002493 ORTHO05D003175 3.9e-18 95.1 91 56.0
C09p71560 Brassica napus HOM05D002493 ORTHO05D003175 9.6e-17 90.5 78 62.8
BolC9t59917H Brassica oleracea HOM05D002493 ORTHO05D003175 9.6e-17 90.5 78 62.8
BcaC06g32223 Brassica carinata HOM05D002493 ORTHO05D003175 8.1e-16 87.4 47 80.9
THA.LOC104826877 Tarenaya hassleriana HOM05D002493 ORTHO05D003175 1.1e-15 87.0 89 55.1
Sp3g09150 Schrenkiella parvula HOM05D002493 ORTHO05D003175 5.3e-15 84.7 90 54.4
AL3G22340 Arabidopsis lyrata HOM05D002493 ORTHO05D003175 1.2e-14 83.6 83 55.4
Aa31LG11G5990 Aethionema arabicum HOM05D002493 ORTHO05D003175 5.8e-14 81.3 90 55.6
Dinv21482 Davidia involucrata HOM05D002493 ORTHO05D003175 1.3e-13 80.1 82 46.3
BcaB01g05937 Brassica carinata HOM05D002493 ORTHO05D003175 4.9e-13 78.2 80 56.2
BolC3t12803H Brassica oleracea HOM05D002493 ORTHO05D003175 4.9e-13 78.2 80 56.2
CANSAT64G2707 Cannabis sativa HOM05D002493 ORTHO05D003175 4.9e-13 78.2 85 47.1
Dinv08254 Davidia involucrata HOM05D002493 ORTHO05D003175 4.9e-13 78.2 81 49.4
Sed0023770 Sechium edule HOM05D002493 ORTHO05D003175 6.4e-13 77.8 76 50.0
BcaB05g21730 Brassica carinata HOM05D002493 ORTHO05D003175 1.1e-12 77.0 58 69.0
Haze_20255 Corylus avellana HOM05D002493 ORTHO05D003175 1.1e-12 77.0 87 48.3
AT3G10820 Arabidopsis thaliana HOM05D002493 ORTHO05D003175 1.4e-12 76.6 77 50.6
A03p02180 Brassica napus HOM05D002493 ORTHO05D003175 1.4e-12 76.6 79 54.4
Nitab4.5_0000062g0160 Nicotiana tabacum HOM05D002493 ORTHO05D003175 1.4e-12 76.6 79 50.6
BcaB01g05724 Brassica carinata HOM05D002493 ORTHO05D003175 1.9e-12 76.3 79 57.0
Phvul.007G239100 Phaseolus vulgaris HOM05D002493 ORTHO05D003175 1.9e-12 76.3 82 43.9
BcaC03g13147 Brassica carinata HOM05D002493 ORTHO05D003175 2.4e-12 75.9 74 58.1
C02p02180 Brassica napus HOM05D002493 ORTHO05D003175 2.4e-12 75.9 74 58.1
AL3G17450 Arabidopsis lyrata HOM05D002493 ORTHO05D003175 3.2e-12 75.5 68 58.8
BolC2t06187H Brassica oleracea HOM05D002493 ORTHO05D003175 3.2e-12 75.5 46 73.9
BraA03t09582Z Brassica rapa HOM05D002493 ORTHO05D003175 3.2e-12 75.5 79 53.2
Cfa019980 Carpinus fangiana HOM05D002493 ORTHO05D003175 3.2e-12 75.5 84 48.8
BraA02t04834Z Brassica rapa HOM05D002493 ORTHO05D003175 5.4e-12 74.7 46 73.9
Cpa.g.sc92.76 Carica papaya HOM05D002493 ORTHO05D003175 5.4e-12 74.7 93 45.2
Prupe.7G028700 Prunus persica HOM05D002493 ORTHO05D003175 5.4e-12 74.7 81 50.6
VMungo0720G0912 Vigna mungo HOM05D002493 ORTHO05D003175 5.4e-12 74.7 78 46.2
Eucgr.A02206 Eucalyptus grandis HOM05D002493 ORTHO05D003175 7.1e-12 74.3 78 48.7
Carub.0003s1006 Capsella rubella HOM05D002493 ORTHO05D003175 2.1e-11 72.8 45 66.7
QL07p012378 Quercus lobata HOM05D002493 ORTHO05D003175 2.1e-11 72.8 84 47.6
Ca_08373_v3 Cicer arietinum L. HOM05D002493 ORTHO05D003175 2.7e-11 72.4 80 47.5
Oeu024613.1 Olea europaea HOM05D002493 ORTHO05D003175 2.7e-11 72.4 83 42.2
FvH4_6g37520 Fragaria vesca HOM05D002493 ORTHO05D003175 3.5e-11 72.0 83 49.4
FAN14G2978 Fragaria x ananassa HOM05D002493 ORTHO05D003175 3.5e-11 72.0 83 49.4
C03p02510 Brassica napus HOM05D002493 ORTHO05D003175 6.0e-11 71.2 49 71.4
ClCG10G016470 Citrullus lanatus HOM05D002493 ORTHO05D003175 1.0e-10 70.5 84 44.0
MELO3C009729.2 Cucumis melo HOM05D002493 ORTHO05D003175 1.0e-10 70.5 84 44.0
Glyma.02G157800 Glycine max HOM05D002493 ORTHO05D003175 1.0e-10 70.5 78 44.9
Lalb_Chr02g0156621 Lupinus albus HOM05D002493 ORTHO05D003175 1.3e-10 70.1 86 47.7
CsaV3_3G039870 Cucumis sativus L. HOM05D002493 ORTHO05D003175 1.8e-10 69.7 83 43.4
Lj2C403T6 Lonicera japonica HOM05D002493 ORTHO05D003175 1.8e-10 69.7 78 44.9
Nn7g36909 Nelumbo nucifera HOM05D002493 ORTHO05D003175 2.3e-10 69.3 78 46.2
Actinidia05482 Actinidia chinensis HOM05D002493 ORTHO05D003175 3.0e-10 68.9 79 45.6
Nitab4.5_0007477g0010 Nicotiana tabacum HOM05D002493 ORTHO05D003175 3.0e-10 68.9 79 46.8
AL8G19710 Arabidopsis lyrata HOM05D008458 ORTHO05D080020 5.1e-10 68.2 68 55.9
CiPaw.09G049700 Carya illinoinensis HOM05D002493 ORTHO05D003175 5.1e-10 68.2 79 44.3
Potri.016G033300 Populus trichocarpa HOM05D002493 ORTHO05D003175 5.1e-10 68.2 102 39.2
PSO384G4835 Papaver somniferum HOM05D002493 ORTHO05D003175 6.7e-10 67.8 81 43.2
Hma1.2p1_0254F.1_g103210 Hydrangea macrophylla HOM05D002493 ORTHO05D003175 8.7e-10 67.4 81 44.4
Sabra16G0036400 Salix brachista HOM05D002493 ORTHO05D003175 8.7e-10 67.4 96 41.7
COL.COLO4_08833 Corchorus olitorius HOM05D002493 ORTHO05D003175 1.5e-09 66.6 93 44.1
Lalb_Chr22g0357761 Lupinus albus HOM05D002493 ORTHO05D003175 1.5e-09 66.6 80 43.8
Ca_22467_v3 Cicer arietinum L. HOM05D000349 ORTHO05D003175 1.9e-09 66.2 80 43.8
Gohir.D11G321900 Gossypium hirsutum HOM05D002493 ORTHO05D003175 1.9e-09 66.2 82 42.7
Gorai.007G352000 Gossypium raimondii HOM05D002493 ORTHO05D003175 1.9e-09 66.2 82 42.7
PSO339G5287 Papaver somniferum HOM05D002493 ORTHO05D003175 1.9e-09 66.2 81 42.0
Actinidia38179 Actinidia chinensis HOM05D002493 ORTHO05D003175 3.3e-09 65.5 82 43.9
Ciclev10011717m.g Citrus clementina HOM05D002493 ORTHO05D003175 3.3e-09 65.5 82 41.5
Gohir.A11G306400 Gossypium hirsutum HOM05D002493 ORTHO05D003175 3.3e-09 65.5 85 44.7
Lalb_Chr14g0365651 Lupinus albus HOM05D002493 ORTHO05D003175 4.3e-09 65.1 77 42.9
Sed0019660 Sechium edule HOM05D002493 ORTHO05D003175 4.3e-09 65.1 76 46.1
SGA_v2.0_scaffold69G23165 Striga asiatica HOM05D002493 ORTHO05D003175 4.3e-09 65.1 89 39.3
Duzib106G0075 Durio zibethinus HOM05D002493 ORTHO05D003175 5.6e-09 64.7 81 48.1
SalBow6G2849 Salvia bowleyana HOM05D002493 ORTHO05D003175 5.6e-09 64.7 86 33.7
CiPaw.10G042500 Carya illinoinensis HOM05D002493 ORTHO05D003175 7.4e-09 64.3 83 42.2
Glyma.03G124700 Glycine max HOM05D002493 ORTHO05D003175 7.4e-09 64.3 87 42.5
Lj1g0014460 Lotus japonicus HOM05D002493 ORTHO05D003175 9.6e-09 63.9 78 44.9
Peaxi162Scf01487g00006 Petunia axillaris HOM05D002493 ORTHO05D003175 9.6e-09 63.9 86 38.4
SGA_v2.0_scaffold66G22278 Striga asiatica HOM05D002493 ORTHO05D003175 9.6e-09 63.9 84 39.3
PGR042G0425 Punica granatum HOM05D002493 ORTHO05D003175 1.3e-08 63.5 78 43.6
RcHm_v2.0_Chr2g0150411 Rosa chinensis HOM05D002493 ORTHO05D003175 1.3e-08 63.5 86 43.0
Thecc.05G121400 Theobroma cacao HOM05D002493 ORTHO05D003175 1.3e-08 63.5 81 46.9
arahy.Tifrunner.gnm1.ann1.4137UB Arachis hypogaea HOM05D002493 ORTHO05D003175 1.6e-08 63.2 79 44.3
arahy.Tifrunner.gnm1.ann1.ZA3CQ0 Arachis hypogaea HOM05D002493 ORTHO05D003175 1.6e-08 63.2 79 44.3
AUR62030285 Chenopodium quinoa HOM05D002493 ORTHO05D003175 1.6e-08 63.2 53 49.1
Ca_12358_v3 Cicer arietinum L. HOM05D002493 ORTHO05D003175 1.6e-08 63.2 80 43.8
MBI13_g36916_MAGBIO Magnolia biondii HOM05D002493 ORTHO05D003175 1.6e-08 63.2 82 42.7
arahy.Tifrunner.gnm1.ann1.RWA00I Arachis hypogaea HOM05D002493 ORTHO05D003175 2.1e-08 62.8 92 41.3
arahy.Tifrunner.gnm1.ann1.SF5CY1 Arachis hypogaea HOM05D002493 ORTHO05D003175 2.1e-08 62.8 89 41.6
CSS0002579 Camellia sinensis var. sinensis HOM05D002493 ORTHO05D003175 2.1e-08 62.8 78 42.3
Ca_17097_v3 Cicer arietinum L. HOM05D002493 ORTHO05D003175 2.1e-08 62.8 80 42.5
Nn2g14656 Nelumbo nucifera HOM05D002493 ORTHO05D003175 2.1e-08 62.8 77 41.6
Manes.08G061400 Manihot esculenta HOM05D002493 ORTHO05D003175 2.8e-08 62.4 89 41.6
Solyc10g080930.2 Solanum lycopersicum HOM05D002493 ORTHO05D003175 2.8e-08 62.4 78 42.3
MBI19_g07500_MAGBIO Magnolia biondii HOM05D002493 ORTHO05D003175 3.7e-08 62.0 78 39.7
Rhsim04G0114000 Rhododendron simsii HOM05D002493 ORTHO05D003175 3.7e-08 62.0 53 50.9
Sabra06G0023800 Salix brachista HOM05D002493 ORTHO05D003175 3.7e-08 62.0 104 38.5
Potri.006G035500 Populus trichocarpa HOM05D002493 ORTHO05D003175 4.8e-08 61.6 106 38.7
PGSC0003DMG400028192 Solanum tuberosum HOM05D002493 ORTHO05D003175 4.8e-08 61.6 78 41.0
MSTRG.19785 Avicennia marina HOM05D002493 ORTHO05D003175 6.2e-08 61.2 84 34.5
FAN09G4564 Fragaria x ananassa HOM05D002493 ORTHO05D003175 6.2e-08 61.2 82 42.7
MSTRG.6331 Avicennia marina HOM05D002493 ORTHO05D003175 8.1e-08 60.8 84 34.5
Migut.K00147 Erythranthe guttata HOM05D002493 ORTHO05D003175 8.1e-08 60.8 80 42.5
Oeu027954.1 Olea europaea HOM05D002493 ORTHO05D003175 8.1e-08 60.8 79 36.7
unitig_21.g20685 Utricularia gibba HOM05D002493 ORTHO05D003175 8.1e-08 60.8 79 38.0
arahy.Tifrunner.gnm1.ann1.TK2Q97 Arachis hypogaea HOM05D002493 ORTHO05D003175 1.1e-07 60.5 88 39.8
Duzib128G0587 Durio zibethinus HOM05D002493 ORTHO05D003175 1.1e-07 60.5 79 44.3
HPP92_025127 Vanilla planifolia HOM05D000001 ORTHO05D000003 1.1e-07 60.5 45 53.3
DCAR_009127 Daucus carota HOM05D002493 ORTHO05D003175 1.4e-07 60.1 82 37.8
BcaB04g18612 Brassica carinata HOM05D002493 ORTHO05D003175 1.8e-07 59.7 65 52.3
Migut.J01632 Erythranthe guttata HOM05D002493 ORTHO05D003175 1.8e-07 59.7 84 35.7
Aqoxy2G00506 Aquilegia oxysepala HOM05D002493 ORTHO05D003175 2.4e-07 59.3 85 38.8
Glyma.19G127800 Glycine max HOM05D002493 ORTHO05D003175 2.4e-07 59.3 83 43.4
Sopen10g031440 Solanum pennellii HOM05D002493 ORTHO05D003175 2.4e-07 59.3 78 41.0
TAR623G0194 Trochodendron aralioides HOM05D002493 ORTHO05D003175 2.4e-07 59.3 82 37.8
Ah.13g077170 Amaranthus hybridus HOM05D002493 ORTHO05D003175 3.1e-07 58.9 84 41.7
Oeu005221.1 Olea europaea HOM05D002493 ORTHO05D003175 3.1e-07 58.9 83 37.3
HanXRQChr13g0406701 Helianthus annuus HOM05D002493 ORTHO05D003175 4.0e-07 58.5 45 53.3
VMungo1383G2045 Vigna mungo HOM05D002493 ORTHO05D003175 4.0e-07 58.5 85 44.7
EL10Ac3g07266 Beta vulgaris HOM05D002493 ORTHO05D003175 5.3e-07 58.2 98 40.8
Nitab4.5_0000812g0010 Nicotiana tabacum HOM05D002493 ORTHO05D003175 6.9e-07 57.8 48 56.2
SGA_v2.0_scaffold106G30532 Striga asiatica HOM05D002493 ORTHO05D003175 6.9e-07 57.8 48 47.9
TAR636G0768 Trochodendron aralioides HOM05D002493 ORTHO05D003175 6.9e-07 57.8 78 42.3
BcaC08g43026 Brassica carinata HOM05D002493 ORTHO05D003175 9.0e-07 57.4 64 46.9
C06p02790 Brassica napus HOM05D002493 ORTHO05D003175 9.0e-07 57.4 64 46.9
Lsat_1_v5_gn_7_61900 Lactuca sativa HOM05D002493 ORTHO05D003175 9.0e-07 57.4 47 53.2
Atru.chr1.1386 Acer truncatum HOM05D002493 ORTHO05D003175 1.2e-06 57.0 85 38.8
CARHR085400 Cardamine hirsuta HOM05D002493 ORTHO05D003175 1.2e-06 57.0 78 43.6
DCAR_013651 Daucus carota HOM05D002493 ORTHO05D003175 1.2e-06 57.0 83 39.8
ECA248G1298 Erigeron canadensis HOM05D002493 ORTHO05D003175 1.2e-06 57.0 51 47.1
Medtr7g089140 Medicago truncatula HOM05D002493 ORTHO05D003175 1.5e-06 56.6 82 41.5
Sc19g0008100 Simmondsia chinensis HOM05D002493 ORTHO05D003175 1.5e-06 56.6 44 47.7
TAR633G1508 Trochodendron aralioides HOM05D002493 ORTHO05D003175 1.5e-06 56.6 78 39.7
Cc00_g10950 Coffea canephora HOM05D002493 ORTHO05D003175 2.0e-06 56.2 42 52.4
FAN02G2197 Fragaria x ananassa HOM05D002493 ORTHO05D003175 2.0e-06 56.2 82 41.5
Lalb_Chr24g0400441 Lupinus albus HOM05D002493 ORTHO05D003175 2.0e-06 56.2 85 41.2
Peaxi162Scf00003g05132 Petunia axillaris HOM05D002493 ORTHO05D003175 2.0e-06 56.2 41 56.1
Peaxi162Scf00003g05135 Petunia axillaris HOM05D002493 ORTHO05D003175 2.0e-06 56.2 41 56.1
Ah.04g150770 Amaranthus hybridus HOM05D002493 ORTHO05D003175 2.6e-06 55.8 87 34.5
Peaxi162Scf00003g05036 Petunia axillaris HOM05D002493 ORTHO05D003175 2.6e-06 55.8 55 45.5
HanXRQChr01g0007661 Helianthus annuus HOM05D002493 ORTHO05D003175 3.4e-06 55.5 43 55.8
Sc13g0000980 Simmondsia chinensis HOM05D002493 ORTHO05D003175 3.4e-06 55.5 77 39.0
HPP92_006789 Vanilla planifolia HOM05D002493 ORTHO05D003175 3.4e-06 55.5 45 51.1
Phvul.001G120200 Phaseolus vulgaris HOM05D002493 ORTHO05D003175 4.5e-06 55.1 85 42.4
Hund19081 Selenicereus undatus HOM05D002493 ORTHO05D003175 4.5e-06 55.1 79 39.2
vmacro08996 Vaccinium macrocarpon HOM05D002493 ORTHO05D003175 4.5e-06 55.1 91 35.2


User provided reference genes

Program Settings