Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G19700 Arabidopsis lyrata HOM05D006465 ORTHO05D008207 4.2e-75 284.6 147 100.0
Carub.0006s0786 Capsella rubella HOM05D006465 ORTHO05D008207 1.3e-73 279.6 147 97.3
AT5G09310 Arabidopsis thaliana HOM05D006465 ORTHO05D008207 4.3e-72 274.6 147 96.6
Thhalv10014951m.g Eutrema salsugineum HOM05D006465 ORTHO05D008207 1.0e-68 263.5 147 89.8
CARHR204090 Cardamine hirsuta HOM05D006465 ORTHO05D008207 1.9e-67 259.2 147 88.4
BcaB08g37219 Brassica carinata HOM05D006465 ORTHO05D008207 4.2e-67 258.1 147 87.1
BolC3t12987H Brassica oleracea HOM05D006465 ORTHO05D008207 4.6e-66 254.6 146 87.0
C03p04560 Brassica napus HOM05D006465 ORTHO05D008207 1.0e-65 253.4 146 85.6
A03p04100 Brassica napus HOM05D006465 ORTHO05D008207 1.3e-65 253.1 146 86.3
BraA03t09753Z Brassica rapa HOM05D006465 ORTHO05D008207 1.3e-65 253.1 146 86.3
Sp6g34010 Schrenkiella parvula HOM05D006465 ORTHO05D008207 1.3e-65 253.1 147 85.0
A10p27930 Brassica napus HOM05D006465 ORTHO05D008207 1.8e-65 252.7 147 85.7
BraA10t44842Z Brassica rapa HOM05D006465 ORTHO05D008207 1.9e-64 249.2 147 83.7
Aa31LG3G17710 Aethionema arabicum HOM05D003132 ORTHO05D003736 1.2e-61 240.0 140 82.9
THA.LOC104800074 Tarenaya hassleriana HOM05D006465 ORTHO05D008207 2.1e-58 229.2 147 78.2
Potri.005G063100 Populus trichocarpa HOM05D006465 ORTHO05D008207 8.5e-52 207.2 148 68.9
MD07G1057500 Malus domestica HOM05D006465 ORTHO05D008207 1.9e-51 206.1 146 69.9
Thecc.01G132600 Theobroma cacao HOM05D006465 ORTHO05D008207 5.5e-51 204.5 143 67.1
Manes.03G123050 Manihot esculenta HOM05D006465 ORTHO05D008207 1.6e-50 203.0 122 77.0
Hund23271 Selenicereus undatus HOM05D006465 ORTHO05D008207 2.1e-50 202.6 144 68.8
CiPaw.04G082200 Carya illinoinensis HOM05D006465 ORTHO05D008207 6.1e-50 201.1 119 73.9
Sabra05G0052300 Salix brachista HOM05D006465 ORTHO05D008207 1.8e-49 199.5 116 76.7
TWI79G1280 Tripterygium wilfordii HOM05D006465 ORTHO05D008207 2.3e-49 199.1 116 75.9
Psat5g062320 Pisum sativum HOM05D006465 ORTHO05D008207 5.1e-49 198.0 141 68.8
TWI75G0808 Tripterygium wilfordii HOM05D006465 ORTHO05D008207 8.8e-49 197.2 116 75.9
Duzib187G1992 Durio zibethinus HOM05D006465 ORTHO05D008207 1.1e-48 196.8 116 74.1
Gohir.A05G384500 Gossypium hirsutum HOM05D005188 ORTHO05D006153 2.0e-48 196.1 145 69.0
Prupe.4G271100 Prunus persica HOM05D006465 ORTHO05D008207 2.0e-48 196.1 146 65.8
Haze_25235 Corylus avellana HOM05D006465 ORTHO05D008207 2.6e-48 195.7 134 67.9
Glyma.06G153700 Glycine max HOM05D006465 ORTHO05D008207 2.6e-48 195.7 144 69.4
CANSAT01G2296 Cannabis sativa HOM05D006465 ORTHO05D008207 4.4e-48 194.9 143 71.3
Gohir.D04G031000 Gossypium hirsutum HOM05D006465 ORTHO05D008207 4.4e-48 194.9 145 68.3
Gorai.012G035200 Gossypium raimondii HOM05D005188 ORTHO05D006153 4.4e-48 194.9 145 68.3
TPR.G28231 Trifolium pratense HOM05D006465 ORTHO05D008207 5.7e-48 194.5 146 66.4
Dinv07122 Davidia involucrata HOM05D006465 ORTHO05D008207 7.4e-48 194.1 139 66.9
Ciclev10002814m.g Citrus clementina HOM05D006465 ORTHO05D008207 1.7e-47 193.0 146 64.4
Ca_16948_v3 Cicer arietinum L. HOM05D002517 ORTHO05D003040 2.2e-47 192.6 141 67.4
Ca_16968_v3 Cicer arietinum L. HOM05D006465 ORTHO05D008207 2.2e-47 192.6 141 67.4
FvH4_2g08820 Fragaria vesca HOM05D006465 ORTHO05D008207 2.8e-47 192.2 144 66.0
FAN10G0435 Fragaria x ananassa HOM05D006465 ORTHO05D008207 2.8e-47 192.2 144 66.0
FAN15G0521 Fragaria x ananassa HOM05D006465 ORTHO05D008207 2.8e-47 192.2 144 66.0
Hma1.2p1_0476F.1_g160840 Hydrangea macrophylla HOM05D006465 ORTHO05D008207 3.7e-47 191.8 111 78.4
Lalb_Chr08g0238351 Lupinus albus HOM05D006465 ORTHO05D008207 4.8e-47 191.4 134 74.6
RcHm_v2.0_Chr6g0264391 Rosa chinensis HOM05D006465 ORTHO05D008207 8.2e-47 190.7 122 72.1
Ah.02g121490 Amaranthus hybridus HOM05D006465 ORTHO05D008207 1.4e-46 189.9 142 65.5
Medtr3g096320 Medicago truncatula HOM05D006465 ORTHO05D008207 1.4e-46 189.9 111 77.5
Glyma.04G212600 Glycine max HOM05D006465 ORTHO05D008207 4.1e-46 188.3 116 74.1
PGR119G2011 Punica granatum HOM05D006465 ORTHO05D008207 4.1e-46 188.3 144 66.7
Atru.chr4.901 Acer truncatum HOM05D006465 ORTHO05D008207 5.3e-46 188.0 144 63.2
Sc07g0001830 Simmondsia chinensis HOM05D006465 ORTHO05D008207 5.3e-46 188.0 107 79.4
EL10Ac6g15303 Beta vulgaris HOM05D006465 ORTHO05D008207 1.5e-45 186.4 114 74.6
AUR62003565 Chenopodium quinoa HOM05D006465 ORTHO05D008207 3.4e-45 185.3 142 64.8
ClCG02G000500 Citrullus lanatus HOM05D006465 ORTHO05D008207 5.9e-45 184.5 119 74.8
arahy.Tifrunner.gnm1.ann1.X6LXMM Arachis hypogaea HOM05D006465 ORTHO05D008207 7.7e-45 184.1 124 70.2
Phvul.009G150900 Phaseolus vulgaris HOM05D006465 ORTHO05D008207 7.7e-45 184.1 115 73.0
AUR62017880 Chenopodium quinoa HOM05D006465 ORTHO05D008207 1.0e-44 183.7 107 77.6
CsaV3_2G018330 Cucumis sativus L. HOM05D006465 ORTHO05D008207 1.0e-44 183.7 120 75.0
Dinv24364 Davidia involucrata HOM05D006465 ORTHO05D008207 1.0e-44 183.7 110 75.5
Sed0005537 Sechium edule HOM05D006465 ORTHO05D008207 1.0e-44 183.7 141 68.1
TAR381G0246 Trochodendron aralioides HOM05D006465 ORTHO05D008207 1.0e-44 183.7 108 77.8
vmacro12798 Vaccinium macrocarpon HOM05D006465 ORTHO05D008207 1.0e-44 183.7 119 72.3
VMungo1309G0274 Vigna mungo HOM05D006465 ORTHO05D008207 2.9e-44 182.2 136 63.2
Lj1g0025116 Lotus japonicus HOM05D006465 ORTHO05D008207 3.8e-44 181.8 146 62.3
Nn5g28548 Nelumbo nucifera HOM05D006465 ORTHO05D008207 5.0e-44 181.4 109 75.2
arahy.Tifrunner.gnm1.ann1.Q2CXKS Arachis hypogaea HOM05D006465 ORTHO05D008207 8.5e-44 180.6 143 62.2
CSS0043698 Camellia sinensis var. sinensis HOM05D006465 ORTHO05D008207 8.5e-44 180.6 107 74.8
Lsat_1_v5_gn_9_25981 Lactuca sativa HOM05D006465 ORTHO05D008207 8.5e-44 180.6 143 61.5
Actinidia06618 Actinidia chinensis HOM05D006465 ORTHO05D008207 1.1e-43 180.3 112 72.3
Aqoxy5G02229 Aquilegia oxysepala HOM05D006465 ORTHO05D000054 1.1e-43 180.3 108 73.1
TAR625G1289 Trochodendron aralioides HOM05D006465 ORTHO05D008207 1.4e-43 179.9 108 75.9
Lj4A839G53 Lonicera japonica HOM05D006465 ORTHO05D008207 3.2e-43 178.7 119 67.2
GSVIVG01026483001 Vitis vinifera HOM05D006465 ORTHO05D008207 5.5e-43 177.9 107 74.8
PSO017G4081 Papaver somniferum HOM05D006465 ORTHO05D008207 7.2e-43 177.6 108 74.1
Nitab4.5_0000181g0060 Nicotiana tabacum HOM05D006465 ORTHO05D008207 6.1e-42 174.5 109 73.4
Peaxi162Scf00270g01115 Petunia axillaris HOM05D006465 ORTHO05D008207 8.0e-42 174.1 109 72.5
Sopen06g005870 Solanum pennellii HOM05D006465 ORTHO05D008207 8.0e-42 174.1 146 59.6
PSO170G5905 Papaver somniferum HOM05D006465 ORTHO05D008207 1.0e-41 173.7 108 71.3
PGSC0003DMG400030138 Solanum tuberosum HOM05D006465 ORTHO05D008207 1.0e-41 173.7 109 70.6
HanXRQChr15g0491331 Helianthus annuus HOM05D006465 ORTHO05D008207 1.4e-41 173.3 108 72.2
CAN.G934.1 Capsicum annuum HOM05D006465 ORTHO05D008207 3.9e-41 171.8 109 70.6
CDE04G1235 Ceratophyllum demersum HOM05D006465 ORTHO05D008207 6.7e-41 171.0 107 69.2
FAN24G0187 Fragaria x ananassa HOM05D006465 ORTHO05D008207 8.8e-41 170.6 133 63.9
Hund04414 Selenicereus undatus HOM05D006465 ORTHO05D008207 8.8e-41 170.6 197 48.7
Cc07_g18520 Coffea canephora HOM05D006465 ORTHO05D008207 5.7e-40 167.9 109 70.6
ECA247G0944 Erigeron canadensis HOM05D006465 ORTHO05D008207 1.7e-39 166.4 146 59.6
QL10p043584 Quercus lobata HOM05D006465 ORTHO05D008207 2.2e-39 166.0 183 47.5
Oeu004242.1 Olea europaea HOM05D006465 ORTHO05D008207 3.7e-39 165.2 111 69.4
HPP92_019397 Vanilla planifolia HOM05D006465 ORTHO05D008207 1.8e-38 162.9 111 66.7
MELO3C023238.2 Cucumis melo HOM05D006465 ORTHO05D008207 3.1e-38 162.2 136 61.0
DCAR_014336 Daucus carota HOM05D006465 ORTHO05D008207 3.1e-38 162.2 109 67.0
Migut.L00880 Erythranthe guttata HOM05D006465 ORTHO05D008207 5.3e-38 161.4 121 61.2
FvH4_3g04510 Fragaria vesca HOM05D006465 ORTHO05D008207 7.0e-38 161.0 97 75.3
FAN11G3155 Fragaria x ananassa HOM05D006465 ORTHO05D008207 7.0e-38 161.0 97 76.3
MSTRG.3605 Avicennia marina HOM05D006465 ORTHO05D008207 1.6e-37 159.8 109 67.0
Migut.L00965 Erythranthe guttata HOM05D006465 ORTHO05D008207 3.5e-37 158.7 110 65.5
Oeu050125.1 Olea europaea HOM05D006465 ORTHO05D008207 1.0e-36 157.1 127 60.6
unitig_88.g27767 Utricularia gibba HOM05D006465 ORTHO05D008207 1.7e-36 156.4 114 61.4
ATR0138G005 Amborella trichopoda HOM05D006465 ORTHO05D008207 1.9e-35 152.9 112 61.6
AagrBONN_evm.TU.Sc2ySwM_117.2181 Anthoceros agrestis HOM05D006465 ORTHO05D008207 1.9e-35 152.9 116 57.8
SGA_v2.0_scaffold19G08773 Striga asiatica HOM05D006465 ORTHO05D008207 2.1e-34 149.4 110 62.7
SalBow7G2903 Salvia bowleyana HOM05D006465 ORTHO05D008207 3.6e-34 148.7 133 56.4
Zm00001eb362550 Zea mays HOM05D006465 ORTHO05D008207 8.0e-34 147.5 112 61.6
Os01g0960000 Oryza sativa ssp. japonica HOM05D006465 ORTHO05D008207 1.0e-33 147.1 114 61.4
Pp3c15_3010 Physcomitrium patens HOM05D006465 ORTHO05D008207 7.7e-29 131.0 102 57.8
Mapoly0113s0017 Marchantia polymorpha HOM05D006465 ORTHO05D008207 3.8e-28 128.6 117 47.9
MD02G1262600 Malus domestica HOM05D006465 ORTHO05D008207 4.2e-27 125.2 96 65.6
SMO367G0154 Selaginella moellendorffii HOM05D006465 ORTHO05D008207 3.4e-24 115.5 107 51.4
Potri.007G106200 Populus trichocarpa HOM05D006465 ORTHO05D008207 1.4e-22 110.2 88 63.6
SEGI_17702 Sequoiadendron giganteum HOM05D006465 ORTHO05D008207 1.6e-21 106.7 96 55.2
BolC9t59563H Brassica oleracea HOM05D006465 ORTHO05D008207 3.6e-18 95.5 48 97.9
Solyc06g016760.3 Solanum lycopersicum HOM05D006465 ORTHO05D008207 6.1e-18 94.7 81 55.6
CBR_g29852 Chara braunii HOM05D006465 ORTHO05D008207 5.7e-16 88.2 107 40.2
CDE12G0205 Ceratophyllum demersum HOM05D006465 ORTHO05D008207 7.5e-16 87.8 58 60.3
Lalb_Chr11g0068481 Lupinus albus HOM05D006465 ORTHO05D008207 4.9e-15 85.1 49 79.6
vmacro20733 Vaccinium macrocarpon HOM05D006465 ORTHO05D008207 4.1e-14 82.0 73 57.5
Rhsim10G0133300 Rhododendron simsii HOM05D006465 ORTHO05D008207 2.0e-13 79.7 50 74.0
Lj4A838T21 Lonicera japonica HOM05D006465 ORTHO05D008207 3.8e-12 75.5 50 68.0
Lalb_Chr11g0068471 Lupinus albus HOM05D006465 ORTHO05D008207 6.6e-12 74.7 48 70.8
Eucgr.I00202 Eucalyptus grandis HOM05D006465 ORTHO05D008207 8.6e-12 74.3 47 72.3
Cc00_g19040 Coffea canephora HOM05D006465 ORTHO05D008207 2.1e-10 69.7 48 66.7
Cc00_g31500 Coffea canephora HOM05D006465 ORTHO05D008207 4.7e-10 68.6 47 66.0
Cre07.g323050 Chlamydomonas reinhardtii HOM05D006465 ORTHO05D008207 3.4e-08 62.4 97 36.1
PRCOL_00001485 Prasinoderma coloniale HOM05D006465 ORTHO05D008207 1.7e-07 60.1 87 41.4


User provided reference genes

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