Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G19330 Arabidopsis lyrata HOM05D000880 ORTHO05D004760 0.0e+00 1487.6 775 100.0
AT5G08600 Arabidopsis thaliana HOM05D000880 ORTHO05D004760 0.0e+00 1130.9 840 75.8
Carub.0006s0757 Capsella rubella HOM05D000880 ORTHO05D004760 0.0e+00 1093.2 830 73.3
Sp6g02280 Schrenkiella parvula HOM05D000880 ORTHO05D004760 7.6e-309 1063.5 854 70.3
Carub.0006s3476 Capsella rubella HOM05D000880 ORTHO05D004760 4.3e-304 1047.7 834 70.5
AT4G02400 Arabidopsis thaliana HOM05D000880 ORTHO05D004760 4.9e-300 1034.2 840 69.8
AL6G50720 Arabidopsis lyrata HOM05D000880 ORTHO05D004760 1.1e-299 1033.1 836 69.7
Aa31LG5G2040 Aethionema arabicum HOM05D000880 ORTHO05D004760 6.0e-298 1027.3 854 67.4
Thhalv10028424m.g Eutrema salsugineum HOM05D000880 ORTHO05D004760 7.6e-293 1010.4 855 67.4
BcaC03g16120 Brassica carinata HOM05D000880 ORTHO05D004760 3.2e-291 1005.0 854 66.0
CARHR250590 Cardamine hirsuta HOM05D000880 ORTHO05D004760 1.0e-289 1000.0 844 67.1
BolC2t09905H Brassica oleracea HOM05D000880 ORTHO05D004760 2.3e-289 998.8 878 64.4
C02p38920 Brassica napus HOM05D000880 ORTHO05D004760 8.7e-289 996.9 867 65.1
A02p24660 Brassica napus HOM05D000880 ORTHO05D004760 1.8e-286 989.2 857 64.9
BcaB05g23626 Brassica carinata HOM05D000880 ORTHO05D004760 2.9e-276 955.3 843 65.1
BraA02t07457Z Brassica rapa HOM05D000880 ORTHO05D004760 3.9e-273 944.9 884 61.8
A09p01860 Brassica napus HOM05D000880 ORTHO05D004760 2.2e-271 939.1 791 67.6
BcaNung04048 Brassica carinata HOM05D000880 ORTHO05D004760 1.8e-265 919.5 798 66.3
Thhalv10015339m.g Eutrema salsugineum HOM05D000880 ORTHO05D004760 6.7e-265 917.5 821 66.1
THA.LOC104801276 Tarenaya hassleriana HOM05D000880 ORTHO05D004760 1.3e-236 823.5 864 56.5
BcaB01g02051 Brassica carinata HOM05D000880 ORTHO05D004760 1.7e-207 726.9 707 61.4
Dinv33059 Davidia involucrata HOM05D000880 ORTHO05D004760 7.3e-203 711.4 885 49.3
Gohir.D12G133800 Gossypium hirsutum HOM05D000880 ORTHO05D004760 4.7e-202 708.8 852 50.6
Gohir.A12G130000 Gossypium hirsutum HOM05D000880 ORTHO05D004760 1.1e-201 707.6 852 50.2
Gorai.008G144800 Gossypium raimondii HOM05D000880 ORTHO05D004760 6.8e-201 704.9 852 50.6
Duzib138G0681 Durio zibethinus HOM05D000880 ORTHO05D004760 2.0e-200 703.4 855 49.8
Cpa.g.sc229.11 Carica papaya HOM05D000880 ORTHO05D004760 5.8e-200 701.8 902 48.1
Oeu000551.1 Olea europaea HOM05D000880 ORTHO05D004760 5.8e-200 701.8 853 49.5
Thecc.01G301500 Theobroma cacao HOM05D000880 ORTHO05D004760 5.8e-200 701.8 874 49.4
Ciclev10027776m.g Citrus clementina HOM05D000880 ORTHO05D004760 1.7e-199 700.3 872 50.0
CSS0022271 Camellia sinensis var. sinensis HOM05D000880 ORTHO05D004760 4.9e-199 698.7 855 49.4
Manes.01G219900 Manihot esculenta HOM05D000880 ORTHO05D004760 1.6e-197 693.7 888 48.6
GSVIVG01028028001 Vitis vinifera HOM05D000880 ORTHO05D004760 5.1e-196 688.7 871 49.1
QL12p028379 Quercus lobata HOM05D000880 ORTHO05D004760 1.1e-195 687.6 883 48.9
Cc01_g20920 Coffea canephora HOM05D000880 ORTHO05D004760 3.3e-195 686.0 869 48.4
CSS0046847 Camellia sinensis var. sinensis HOM05D000880 ORTHO05D004760 3.6e-194 682.6 868 47.8
Nitab4.5_0002995g0010 Nicotiana tabacum HOM05D000880 ORTHO05D004760 4.7e-194 682.2 881 46.9
PGSC0003DMG400023908 Solanum tuberosum HOM05D000880 ORTHO05D004760 1.2e-192 677.6 859 48.1
Atru.chr3.2809 Acer truncatum HOM05D000880 ORTHO05D004760 7.6e-192 674.9 865 49.2
CAN.G125.1 Capsicum annuum HOM05D000880 ORTHO05D004760 7.6e-192 674.9 897 47.5
Lj2A1196T50 Lonicera japonica HOM05D000880 ORTHO05D004760 7.6e-192 674.9 875 47.8
SalBow7G4572 Salvia bowleyana HOM05D000880 ORTHO05D004760 2.2e-191 673.3 885 47.8
Solyc09g005760.3 Solanum lycopersicum HOM05D000880 ORTHO05D004760 4.9e-191 672.2 878 47.4
CANSAT25G3354 Cannabis sativa HOM05D000880 ORTHO05D004760 3.2e-190 669.5 878 47.9
Hma1.2p1_0494F.1_g165220 Hydrangea macrophylla HOM05D000880 ORTHO05D004760 1.2e-189 667.5 869 47.8
Sopen09g001650 Solanum pennellii HOM05D000880 ORTHO05D004760 1.2e-189 667.5 897 46.9
Eucgr.K03490 Eucalyptus grandis HOM05D000880 ORTHO05D004760 1.0e-188 664.5 867 47.9
MELO3C015997.2 Cucumis melo HOM05D000880 ORTHO05D004760 1.7e-188 663.7 873 46.8
Potri.002G203700 Populus trichocarpa HOM05D000880 ORTHO05D004760 3.0e-188 662.9 857 47.5
CsaV3_7G029310 Cucumis sativus L. HOM05D000880 ORTHO05D004760 5.1e-188 662.1 880 46.7
Potri.014G128300 Populus trichocarpa HOM05D000880 ORTHO05D004760 6.6e-188 661.8 861 46.7
Migut.C01322 Erythranthe guttata HOM05D000880 ORTHO05D004760 9.6e-187 657.9 879 46.9
CiPaw.07G109900 Carya illinoinensis HOM05D000880 ORTHO05D004760 1.4e-185 654.1 873 47.3
Haze_04946 Corylus avellana HOM05D000880 ORTHO05D004760 1.5e-184 650.6 824 48.5
ClCG09G005830 Citrullus lanatus HOM05D000880 ORTHO05D004760 2.6e-184 649.8 871 46.6
PGR044G0963 Punica granatum HOM05D000880 ORTHO05D004760 4.4e-184 649.0 865 47.4
SalBow5G3782 Salvia bowleyana HOM05D000880 ORTHO05D004760 4.4e-184 649.0 878 46.9
Sabra02G0155400 Salix brachista HOM05D000880 ORTHO05D004760 1.3e-183 647.5 877 46.4
TAR362G0476 Trochodendron aralioides HOM05D000880 ORTHO05D004760 2.2e-183 646.7 904 46.6
AUR62026599 Chenopodium quinoa HOM05D000880 ORTHO05D004760 1.1e-182 644.4 854 46.8
vmacro15153 Vaccinium macrocarpon HOM05D000880 ORTHO05D004760 5.4e-182 642.1 843 47.3
Cfa005904 Carpinus fangiana HOM05D000880 ORTHO05D004760 1.2e-181 641.0 846 46.9
Sed0027832 Sechium edule HOM05D000880 ORTHO05D004760 2.7e-181 639.8 884 45.4
Hund25319 Selenicereus undatus HOM05D000880 ORTHO05D004760 4.6e-181 639.0 872 45.4
Sc04g0008900 Simmondsia chinensis HOM05D000880 ORTHO05D004760 7.8e-181 638.3 867 45.6
Ah.07g202710 Amaranthus hybridus HOM05D000880 ORTHO05D004760 1.7e-180 637.1 855 46.2
Nn3g21505 Nelumbo nucifera HOM05D000880 ORTHO05D004760 3.0e-180 636.3 868 47.2
Sed0021307 Sechium edule HOM05D000880 ORTHO05D004760 3.0e-180 636.3 864 45.1
PSO541G5609 Papaver somniferum HOM05D000880 ORTHO05D004760 6.6e-180 635.2 875 44.9
DCAR_015239 Daucus carota HOM05D000880 ORTHO05D004760 4.3e-179 632.5 816 47.8
TWI14G0456 Tripterygium wilfordii HOM05D000880 ORTHO05D004760 5.6e-179 632.1 900 45.6
Lalb_Chr18g0046951 Lupinus albus HOM05D000880 ORTHO05D004760 9.6e-179 631.3 861 46.2
PSO675G6830 Papaver somniferum HOM05D000880 ORTHO05D004760 8.1e-178 628.2 881 44.5
Rhsim11G0035900 Rhododendron simsii HOM05D000880 ORTHO05D004760 1.8e-177 627.1 773 49.9
COL.COLO4_23336 Corchorus olitorius HOM05D000880 ORTHO05D004760 1.2e-176 624.4 847 45.8
FAN20G0148 Fragaria x ananassa HOM05D000880 ORTHO05D007053 7.6e-176 621.7 854 46.1
Peaxi162Scf00039g00620 Petunia axillaris HOM05D000880 ORTHO05D004760 2.9e-175 619.8 819 46.9
FAN27G2693 Fragaria x ananassa HOM05D000880 ORTHO05D004760 3.8e-175 619.4 853 46.7
Rhsim01G0285600 Rhododendron simsii HOM05D000880 ORTHO05D004760 1.1e-174 617.8 780 48.8
MD11G1308900 Malus domestica HOM05D000880 ORTHO05D004760 5.4e-174 615.5 877 45.8
RcHm_v2.0_Chr6g0294141 Rosa chinensis HOM05D000880 ORTHO05D004760 5.4e-174 615.5 881 45.9
SGA_v2.0_scaffold24G10608 Striga asiatica HOM05D000880 ORTHO05D004760 1.2e-173 614.4 875 45.8
Aqoxy2G02932 Aquilegia oxysepala HOM05D000880 ORTHO05D004760 4.6e-173 612.5 873 45.9
FAN24G3174 Fragaria x ananassa HOM05D000880 ORTHO05D007053 4.6e-173 612.5 857 45.4
AUR62005314 Chenopodium quinoa HOM05D000880 ORTHO05D004760 6.7e-172 608.6 824 46.2
FAN15G1023 Fragaria x ananassa HOM05D000880 ORTHO05D007053 6.7e-172 608.6 857 45.0
arahy.Tifrunner.gnm1.ann1.FAXC2W Arachis hypogaea HOM05D000880 ORTHO05D004760 2.8e-170 603.2 881 44.6
EL10Ac9g22871 Beta vulgaris HOM05D000880 ORTHO05D004760 6.2e-170 602.1 803 45.2
Glyma.19G211500 Glycine max HOM05D000880 ORTHO05D004760 5.3e-169 599.0 873 44.6
Lj1g0000333 Lotus japonicus HOM05D000880 ORTHO05D004760 9.0e-169 598.2 868 44.9
arahy.Tifrunner.gnm1.ann1.DCE7TU Arachis hypogaea HOM05D000880 ORTHO05D004760 1.2e-168 597.8 885 44.3
C09p01900 Brassica napus HOM05D000880 ORTHO05D004760 3.8e-167 592.8 809 48.1
BolC9t53125H Brassica oleracea HOM05D000880 ORTHO05D004760 3.8e-167 592.8 809 48.1
MD03G1289000 Malus domestica HOM05D000880 ORTHO05D004760 3.8e-167 592.8 881 44.9
Phvul.001G207700 Phaseolus vulgaris HOM05D000880 ORTHO05D004760 8.4e-167 591.7 874 45.3
Glyma.03G214900 Glycine max HOM05D000880 ORTHO05D004760 1.9e-166 590.5 873 44.6
Lsat_1_v5_gn_5_191521 Lactuca sativa HOM05D000880 ORTHO05D004760 2.5e-166 590.1 847 44.7
FvH4_2g25830 Fragaria vesca HOM05D000880 ORTHO05D004760 1.6e-165 587.4 820 45.9
HanXRQChr01g0001311 Helianthus annuus HOM05D000880 ORTHO05D004760 1.0e-164 584.7 841 44.7
Ca_09177_v3 Cicer arietinum L. HOM05D000880 ORTHO05D004760 4.0e-161 572.8 867 43.1
Psat3g021720 Pisum sativum HOM05D000880 ORTHO05D004760 9.0e-161 571.6 847 44.5
Os03g0343300 Oryza sativa ssp. japonica HOM05D000880 ORTHO05D004760 4.9e-159 565.8 844 44.5
unitig_747.g21560 Utricularia gibba HOM05D000880 ORTHO05D004760 4.9e-159 565.8 862 43.6
HPP92_011847 Vanilla planifolia HOM05D000880 ORTHO05D004760 5.5e-158 562.4 855 43.2
MSTRG.25483 Avicennia marina HOM05D000880 ORTHO05D004760 3.5e-157 559.7 728 47.7
Medtr7g108730 Medicago truncatula HOM05D000880 ORTHO05D004760 2.3e-156 557.0 860 43.0
TPR.G9606 Trifolium pratense HOM05D000880 ORTHO05D004760 4.8e-154 549.3 852 43.5
ATR0100G058 Amborella trichopoda HOM05D000880 ORTHO05D004760 5.9e-152 542.3 859 41.8
ECA248G0121 Erigeron canadensis HOM05D000880 ORTHO05D004760 7.2e-150 535.4 852 42.0
Hma1.2p1_1471F.1_g285620 Hydrangea macrophylla HOM05D000880 ORTHO05D004760 6.7e-148 528.9 767 45.2
PSO478G4138 Papaver somniferum HOM05D000880 ORTHO05D004760 6.7e-148 528.9 727 46.2
Nitab4.5_0004207g0040 Nicotiana tabacum HOM05D000880 ORTHO05D004760 1.5e-147 527.7 881 40.3
Zm00001eb016440 Zea mays HOM05D000880 ORTHO05D004760 2.2e-146 523.9 841 41.6
Medtr3g113240 Medicago truncatula HOM05D000880 ORTHO05D004760 6.7e-140 502.3 834 42.4
Oeu028138.2 Olea europaea HOM05D000880 ORTHO05D004760 9.1e-137 491.9 764 41.6
Atru.chr5.2474 Acer truncatum HOM05D000880 ORTHO05D004760 2.3e-124 450.7 569 49.6
Medtr7g091790 Medicago truncatula HOM05D000880 ORTHO05D004760 3.1e-121 440.3 765 39.7
Nitab4.5_0007049g0030 Nicotiana tabacum HOM05D000880 ORTHO05D004760 5.4e-121 439.5 613 44.7
Prupe.8G262300 Prunus persica HOM05D000880 ORTHO05D004760 5.2e-116 422.9 590 46.8
Actinidia26752 Actinidia chinensis HOM05D000880 ORTHO05D004760 4.4e-115 419.9 555 48.6
CDE05G0797 Ceratophyllum demersum HOM05D000880 ORTHO05D004760 3.7e-114 416.8 831 38.0
SEGI_18392 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 3.7e-114 416.8 1059 32.8
SMO146G0364 Selaginella moellendorffii HOM05D000880 ORTHO05D004760 5.0e-103 379.8 919 32.9
C08p50820 Brassica napus HOM05D000880 ORTHO05D004760 1.2e-99 368.6 335 68.1
BcaC07g42028 Brassica carinata HOM05D000880 ORTHO05D004760 9.5e-94 349.0 394 57.9
Mapoly0012s0035 Marchantia polymorpha HOM05D000880 ORTHO05D004760 1.2e-93 348.6 1045 30.5
VMungo1383G0181 Vigna mungo HOM05D000880 ORTHO05D004760 1.1e-92 345.5 449 47.7
BcaC08g44566 Brassica carinata HOM05D000880 ORTHO05D004760 4.0e-92 343.6 299 68.9
BolC4t25292H Brassica oleracea HOM05D000880 ORTHO05D004760 5.4e-89 333.2 378 56.9
C02p30160 Brassica napus HOM05D000880 ORTHO05D004760 7.1e-89 332.8 380 56.1
MBI19_g43564_MAGBIO Magnolia biondii HOM05D000880 ORTHO05D004760 6.0e-88 329.7 397 49.6
BcaC02g09729 Brassica carinata HOM05D000880 ORTHO05D004760 3.9e-87 327.0 378 56.1
BcaC06g34728 Brassica carinata HOM05D000880 ORTHO05D004760 6.2e-85 319.7 338 60.4
PSO782G1438 Papaver somniferum HOM05D000880 ORTHO05D004760 1.1e-76 292.4 443 44.0
PSO541G3373 Papaver somniferum HOM05D000880 ORTHO05D004760 4.0e-76 290.4 436 45.2
Pp3c9_17240 Physcomitrium patens HOM05D000880 ORTHO05D004760 2.2e-74 284.6 985 28.6
AagrBONN_evm.TU.Sc2ySwM_117.3282 Anthoceros agrestis HOM05D000880 ORTHO05D004760 5.1e-71 273.5 958 29.2
BolC8t52610H Brassica oleracea HOM05D000880 ORTHO05D004760 8.1e-69 266.2 264 64.8
PGR003G0015 Punica granatum HOM05D000880 ORTHO05D004760 5.8e-67 260.0 313 46.6
BcaC03g15404 Brassica carinata HOM05D000880 ORTHO05D001048 7.6e-67 259.6 298 57.7
Medtr8g058740 Medicago truncatula HOM05D000880 ORTHO05D004760 9.9e-67 259.2 341 44.9
VMungo1383G0715 Vigna mungo HOM05D000880 ORTHO05D004760 9.3e-65 252.7 193 65.3
MSTRG.25474 Avicennia marina HOM05D000880 ORTHO05D004760 2.7e-64 251.1 247 55.1
TAR633G1122 Trochodendron aralioides HOM05D000880 ORTHO05D004760 1.7e-63 248.4 252 52.0
TAR636G2791 Trochodendron aralioides HOM05D000880 ORTHO05D004760 2.5e-62 244.6 273 48.7
CBR_g19437 Chara braunii HOM05D000880 ORTHO05D004760 3.4e-59 234.2 989 25.6
A10p23840 Brassica napus HOM05D000880 ORTHO05D004760 1.9e-54 218.4 194 64.9
MCO13G364 Micromonas commoda HOM05D000880 ORTHO05D004760 2.8e-53 214.5 807 27.6
PRCOL_00002788 Prasinoderma coloniale HOM05D000880 ORTHO05D004760 2.0e-51 208.4 794 28.1
BraA04t17148Z Brassica rapa HOM05D000880 ORTHO05D004760 2.6e-51 208.0 282 51.4
A04p15040 Brassica napus HOM05D000880 ORTHO05D004760 4.5e-51 207.2 283 51.9
C07p40760 Brassica napus HOM05D000880 ORTHO05D004760 3.8e-50 204.1 160 71.9
PSO210G4167 Papaver somniferum HOM05D000880 ORTHO05D004760 6.9e-44 183.3 311 40.2
Oeu000538.1 Olea europaea HOM05D000880 ORTHO05D004760 3.4e-43 181.0 211 47.9
A09p11280 Brassica napus HOM05D000880 ORTHO05D004760 5.5e-41 173.7 275 47.6
A04p00500 Brassica napus HOM05D000880 ORTHO05D004760 4.6e-40 170.6 275 46.9
SEGI_12067 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 4.6e-40 170.6 234 41.9
CAN.G1465.7 Capsicum annuum HOM05D000880 ORTHO05D004760 3.1e-36 157.9 155 54.2
SEGI_30897 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 5.3e-36 157.1 219 41.1
Gorai.008G145900 Gossypium raimondii HOM05D000880 ORTHO05D004760 1.5e-35 155.6 172 54.1
Gohir.D12G134950 Gossypium hirsutum HOM05D000880 ORTHO05D004760 2.0e-35 155.2 177 54.2
TAR627G0201 Trochodendron aralioides HOM05D000880 ORTHO05D004760 5.1e-31 140.6 268 35.8
SMO146G0006 Selaginella moellendorffii HOM05D000880 ORTHO05D004760 7.4e-30 136.7 235 35.7
Cre11.g478950 Chlamydomonas reinhardtii HOM05D000880 ORTHO05D004760 1.8e-28 132.1 155 41.3
Cre11.g478966 Chlamydomonas reinhardtii HOM05D000880 ORTHO05D004760 1.8e-28 132.1 155 41.3
Cfa026849 Carpinus fangiana HOM05D000880 ORTHO05D004760 2.4e-28 131.7 641 25.7
AT5G36980 Arabidopsis thaliana HOM05D000880 ORTHO05D004760 2.2e-26 125.2 172 47.7
CAN.G1018.15 Capsicum annuum HOM05D000880 ORTHO05D004760 1.4e-20 105.9 129 43.4
Gohir.A12G131050 Gossypium hirsutum HOM05D000880 ORTHO05D004760 2.0e-19 102.1 124 49.2
SEGI_39037 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 1.2e-16 92.8 120 48.3
BcaB04g17655 Brassica carinata HOM05D005969 ORTHO05D007407 2.2e-10 72.0 58 70.7
Rhsim01G0285700 Rhododendron simsii HOM05D000203 ORTHO05D000135 6.5e-10 70.5 251 29.5
Actinidia21043 Actinidia chinensis HOM05D000203 ORTHO05D000135 1.5e-09 69.3 209 26.3
CAN.G619.12 Capsicum annuum HOM05D000880 ORTHO05D004760 3.6e-08 64.7 121 41.3
CAN.G1465.8 Capsicum annuum HOM05D000880 ORTHO05D004760 4.7e-08 64.3 81 48.1
A04p15050 Brassica napus HOM05D000880 ORTHO05D014501 2.0e-06 58.9 47 68.1
Cfa021652 Carpinus fangiana HOM05D000880 ORTHO05D004760 3.4e-06 58.2 56 55.4
CAN.G1015.4 Capsicum annuum HOM05D004625 ORTHO05D006054 9.8e-06 56.6 82 43.9


User provided reference genes

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