Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G19210 Arabidopsis lyrata HOM05D001552 ORTHO05D013172 4.5e-68 261.2 134 100.0
AL6G19060 Arabidopsis lyrata HOM05D001552 ORTHO05D013172 9.8e-55 216.9 130 89.2
Carub.0006s0746 Capsella rubella HOM05D001552 ORTHO05D013172 7.8e-20 100.9 134 53.7
Thhalv10022147m.g Eutrema salsugineum HOM05D001552 ORTHO05D013172 8.1e-17 90.9 82 65.9
THA.LOC104813715 Tarenaya hassleriana HOM05D001552 ORTHO05D003294 3.1e-16 89.0 91 54.9
BcaB05g25013 Brassica carinata HOM05D001552 ORTHO05D003294 4.0e-16 88.6 97 50.5
Manes.02G178500 Manihot esculenta HOM05D001552 ORTHO05D003294 6.8e-16 87.8 98 49.0
AT1G76810 Arabidopsis thaliana HOM05D001552 ORTHO05D003294 8.9e-16 87.4 97 49.5
BcaC03g15705 Brassica carinata HOM05D001552 ORTHO05D003294 8.9e-16 87.4 97 50.5
A02p20910 Brassica napus HOM05D001552 ORTHO05D003294 8.9e-16 87.4 97 50.5
C02p32730 Brassica napus HOM05D001552 ORTHO05D003294 8.9e-16 87.4 97 50.5
BolC2t09426H Brassica oleracea HOM05D001552 ORTHO05D003294 8.9e-16 87.4 97 50.5
BraA02t07123Z Brassica rapa HOM05D001552 ORTHO05D003294 8.9e-16 87.4 97 50.5
Oeu036723.4 Olea europaea HOM05D001552 ORTHO05D003294 1.2e-15 87.0 97 49.5
Sp5g31970 Schrenkiella parvula HOM05D001552 ORTHO05D003294 1.2e-15 87.0 97 49.5
AL2G36950 Arabidopsis lyrata HOM05D001552 ORTHO05D003294 1.5e-15 86.7 97 49.5
Carub.0002s2372 Capsella rubella HOM05D001552 ORTHO05D003294 1.5e-15 86.7 97 49.5
CARHR070350 Cardamine hirsuta HOM05D001552 ORTHO05D003294 1.5e-15 86.7 97 49.5
Thhalv10006634m.g Eutrema salsugineum HOM05D001552 ORTHO05D003294 1.5e-15 86.7 91 53.8
Sabra12G0027700 Salix brachista HOM05D001552 ORTHO05D003294 1.5e-15 86.7 97 49.5
Solyc03g058350.4 Solanum lycopersicum HOM05D001552 ORTHO05D003294 1.5e-15 86.7 97 48.5
Sopen03g011870 Solanum pennellii HOM05D001552 ORTHO05D003294 1.5e-15 86.7 97 48.5
Sopen03g015600 Solanum pennellii HOM05D001552 ORTHO05D003294 1.5e-15 86.7 97 48.5
PGSC0003DMG400005489 Solanum tuberosum HOM05D001552 ORTHO05D003294 1.5e-15 86.7 97 48.5
Thhalv10018018m.g Eutrema salsugineum HOM05D001552 ORTHO05D003294 2.0e-15 86.3 97 49.5
Duzib147G0536 Durio zibethinus HOM05D001552 ORTHO05D003294 2.6e-15 85.9 97 48.5
GSVIVG01034895001 Vitis vinifera HOM05D001552 ORTHO05D003294 3.4e-15 85.5 97 48.5
Duzib248G1523 Durio zibethinus HOM05D001552 ORTHO05D003294 4.4e-15 85.1 97 48.5
Potri.012G039200 Populus trichocarpa HOM05D001552 ORTHO05D003294 4.4e-15 85.1 97 48.5
BcaB03g12829 Brassica carinata HOM05D001552 ORTHO05D003294 5.8e-15 84.7 91 50.5
A08p29040 Brassica napus HOM05D001552 ORTHO05D003294 5.8e-15 84.7 91 52.7
BraA08t34839Z Brassica rapa HOM05D001552 ORTHO05D003294 5.8e-15 84.7 91 52.7
Thecc.01G142700 Theobroma cacao HOM05D001552 ORTHO05D003294 5.8e-15 84.7 97 48.5
Thecc.01G143000 Theobroma cacao HOM05D001552 ORTHO05D003294 5.8e-15 84.7 97 48.5
AL2G36870 Arabidopsis lyrata HOM05D001552 ORTHO05D003294 7.6e-15 84.3 97 48.5
BcaB08g34900 Brassica carinata HOM05D001552 ORTHO05D013172 7.6e-15 84.3 140 45.0
Gohir.A04G138500 Gossypium hirsutum HOM05D001552 ORTHO05D003294 7.6e-15 84.3 97 48.5
Gohir.D04G181400 Gossypium hirsutum HOM05D001552 ORTHO05D003294 7.6e-15 84.3 97 48.5
Gorai.012G174700 Gossypium raimondii HOM05D001552 ORTHO05D003294 7.6e-15 84.3 97 48.5
BcaC07g39081 Brassica carinata HOM05D001552 ORTHO05D003294 9.9e-15 84.0 91 51.6
C08p20660 Brassica napus HOM05D001552 ORTHO05D003294 9.9e-15 84.0 91 51.6
BolC8t49698H Brassica oleracea HOM05D001552 ORTHO05D003294 9.9e-15 84.0 91 51.6
HanXRQChr02g0040771 Helianthus annuus HOM05D001552 ORTHO05D003294 9.9e-15 84.0 97 47.4
HanXRQChr16g0503421 Helianthus annuus HOM05D001552 ORTHO05D003294 9.9e-15 84.0 97 47.4
ECA247G0581 Erigeron canadensis HOM05D001552 ORTHO05D003294 1.3e-14 83.6 97 49.5
BcaC07g41471 Brassica carinata HOM05D001552 ORTHO05D013172 1.7e-14 83.2 111 50.5
AT2G27700 Arabidopsis thaliana HOM05D001552 ORTHO05D003294 2.2e-14 82.8 97 45.4
Cpa.g.sc21.188 Carica papaya HOM05D001552 ORTHO05D003294 2.2e-14 82.8 97 49.5
Lsat_1_v5_gn_1_6540 Lactuca sativa HOM05D001552 ORTHO05D003294 2.2e-14 82.8 97 47.4
Carub.0002s2359 Capsella rubella HOM05D001552 ORTHO05D003294 2.9e-14 82.4 97 48.5
COL.COLO4_12118 Corchorus olitorius HOM05D002593 ORTHO05D003294 2.9e-14 82.4 97 47.4
PGSC0003DMG400030793 Solanum tuberosum HOM05D001552 ORTHO05D003294 2.9e-14 82.4 97 46.4
Sopen06g019480 Solanum pennellii HOM05D001552 ORTHO05D003294 3.7e-14 82.0 97 47.4
CARHR021610 Cardamine hirsuta HOM05D001552 ORTHO05D003294 4.9e-14 81.6 91 48.4
DCAR_014429 Daucus carota HOM05D001552 ORTHO05D003294 4.9e-14 81.6 97 48.5
PGSC0003DMG400004211 Solanum tuberosum HOM05D001387 ORTHO05D001250 4.9e-14 81.6 97 46.4
Aa31LG4G6880 Aethionema arabicum HOM05D001552 ORTHO05D003294 6.4e-14 81.3 100 48.0
TWI32G1172 Tripterygium wilfordii HOM05D001552 ORTHO05D003294 6.4e-14 81.3 97 47.4
CAN.G1025.6 Capsicum annuum HOM05D001552 ORTHO05D003294 8.4e-14 80.9 97 46.4
Lalb_Chr06g0161531 Lupinus albus HOM05D001552 ORTHO05D003294 8.4e-14 80.9 98 45.9
Rhsim02G0210400 Rhododendron simsii HOM05D001552 ORTHO05D003294 8.4e-14 80.9 97 47.4
Atru.chr3.1471 Acer truncatum HOM05D001552 ORTHO05D003294 1.1e-13 80.5 97 46.4
Aqoxy5G01312 Aquilegia oxysepala HOM05D001552 ORTHO05D003294 1.1e-13 80.5 97 48.5
AT1G21160 Arabidopsis thaliana HOM05D001552 ORTHO05D003294 1.1e-13 80.5 100 48.0
CiPaw.16G013700 Carya illinoinensis HOM05D001552 ORTHO05D003294 1.4e-13 80.1 96 46.9
Cc10_g14600 Coffea canephora HOM05D001552 ORTHO05D003294 1.4e-13 80.1 97 46.4
FvH4_2g13940 Fragaria vesca HOM05D001552 ORTHO05D003294 1.4e-13 80.1 97 48.5
FAN15G1427 Fragaria x ananassa HOM05D001552 ORTHO05D003294 1.4e-13 80.1 97 48.5
FAN20G2090 Fragaria x ananassa HOM05D001552 ORTHO05D003294 1.4e-13 80.1 97 48.5
FAN24G0455 Fragaria x ananassa HOM05D001552 ORTHO05D003294 1.4e-13 80.1 97 48.5
FAN27G2666 Fragaria x ananassa HOM05D001552 ORTHO05D003294 1.4e-13 80.1 97 48.5
PGR042G3030 Punica granatum HOM05D001552 ORTHO05D003294 1.4e-13 80.1 97 47.4
PGR122G0003 Punica granatum HOM05D001552 ORTHO05D003294 1.4e-13 80.1 97 47.4
SMO356G0283 Selaginella moellendorffii HOM05D001552 ORTHO05D003294 1.4e-13 80.1 97 48.5
SEGI_17464 Sequoiadendron giganteum HOM05D001552 ORTHO05D003294 1.4e-13 80.1 98 43.9
SGA_v2.0_scaffold166G38394 Striga asiatica HOM05D001552 ORTHO05D003294 1.4e-13 80.1 97 46.4
MELO3C023716.2 Cucumis melo HOM05D001552 ORTHO05D003294 1.9e-13 79.7 97 46.4
CsaV3_7G025160 Cucumis sativus L. HOM05D001552 ORTHO05D003294 1.9e-13 79.7 97 46.4
Hund21082 Selenicereus undatus HOM05D001552 ORTHO05D003294 1.9e-13 79.7 91 50.5
AL1G34220 Arabidopsis lyrata HOM05D001552 ORTHO05D003294 2.4e-13 79.3 89 51.7
Prupe.8G027900 Prunus persica HOM05D001552 ORTHO05D003294 2.4e-13 79.3 97 47.4
Rhsim06G0017900 Rhododendron simsii HOM05D001552 ORTHO05D003294 2.4e-13 79.3 97 47.4
Sed0008881 Sechium edule HOM05D001552 ORTHO05D003294 2.4e-13 79.3 92 48.9
Sed0012093 Sechium edule HOM05D001552 ORTHO05D003294 2.4e-13 79.3 97 46.4
Atru.chr12.1261 Acer truncatum HOM05D001552 ORTHO05D003294 3.2e-13 79.0 97 44.3
Atru.chr12.1264 Acer truncatum HOM05D001552 ORTHO05D003294 3.2e-13 79.0 97 44.3
Migut.N02939 Erythranthe guttata HOM05D001552 ORTHO05D003294 3.2e-13 79.0 90 48.9
Medtr1g099000 Medicago truncatula HOM05D001552 ORTHO05D003294 3.2e-13 79.0 89 50.6
Ca_19934_v3 Cicer arietinum L. HOM05D001552 ORTHO05D003294 4.1e-13 78.6 89 49.4
Glyma.10G225800 Glycine max HOM05D001552 ORTHO05D003294 4.1e-13 78.6 97 45.4
Glyma.20G166200 Glycine max HOM05D001552 ORTHO05D003294 4.1e-13 78.6 97 45.4
Phvul.007G079200 Phaseolus vulgaris HOM05D001552 ORTHO05D003294 4.1e-13 78.6 97 45.4
arahy.Tifrunner.gnm1.ann1.41AL06 Arachis hypogaea HOM05D001552 ORTHO05D003294 5.4e-13 78.2 97 46.4
arahy.Tifrunner.gnm1.ann1.I67LVW Arachis hypogaea HOM05D001552 ORTHO05D003294 5.4e-13 78.2 97 46.4
Sed0008952 Sechium edule HOM05D001552 ORTHO05D003294 5.4e-13 78.2 97 45.4
PGSC0003DMG400027861 Solanum tuberosum HOM05D001552 ORTHO05D003294 5.4e-13 78.2 91 47.3
VMungo0720G2262 Vigna mungo HOM05D001552 ORTHO05D003294 5.4e-13 78.2 97 45.4
Actinidia10656 Actinidia chinensis HOM05D001552 ORTHO05D003294 7.1e-13 77.8 97 46.4
COL.COLO4_14636 Corchorus olitorius HOM05D001552 ORTHO05D003294 7.1e-13 77.8 97 44.3
MD05G1023200 Malus domestica HOM05D001552 ORTHO05D003294 7.1e-13 77.8 97 47.4
Sc15g0007410 Simmondsia chinensis HOM05D001552 ORTHO05D003294 7.1e-13 77.8 97 46.4
Sc15g0007440 Simmondsia chinensis HOM05D001552 ORTHO05D003294 7.1e-13 77.8 97 46.4
Solyc06g054400.3 Solanum lycopersicum HOM05D001552 ORTHO05D003294 7.1e-13 77.8 97 45.4
CSS0002929 Camellia sinensis var. sinensis HOM05D001552 ORTHO05D003294 9.2e-13 77.4 97 46.4
Ciclev10000034m.g Citrus clementina HOM05D001552 ORTHO05D003294 9.2e-13 77.4 97 46.4
Dinv25851 Davidia involucrata HOM05D001552 ORTHO05D003294 9.2e-13 77.4 97 45.4
MD10G1024100 Malus domestica HOM05D001552 ORTHO05D003294 9.2e-13 77.4 97 47.4
RcHm_v2.0_Chr6g0275701 Rosa chinensis HOM05D001552 ORTHO05D003294 9.2e-13 77.4 97 46.4
Sopen04g036040 Solanum pennellii HOM05D001552 ORTHO05D003294 9.2e-13 77.4 97 44.3
SGA_v2.0_scaffold11G05845 Striga asiatica HOM05D001552 ORTHO05D003294 9.2e-13 77.4 97 45.4
TPR.G30006 Trifolium pratense HOM05D001552 ORTHO05D003294 9.2e-13 77.4 102 43.1
TAR381G0343 Trochodendron aralioides HOM05D001552 ORTHO05D003294 9.2e-13 77.4 97 46.4
Ah.04g157390 Amaranthus hybridus HOM05D001552 ORTHO05D003294 1.2e-12 77.0 91 48.4
CiPaw.15G017000 Carya illinoinensis HOM05D001552 ORTHO05D003294 1.2e-12 77.0 96 45.8
PGSC0003DMG400004377 Solanum tuberosum HOM05D001552 ORTHO05D003294 1.2e-12 77.0 91 46.2
AagrBONN_evm.TU.Sc2ySwM_228.5643 Anthoceros agrestis HOM05D001552 ORTHO05D003294 1.6e-12 76.6 98 43.9
EL10Ac7g16024 Beta vulgaris HOM05D001552 ORTHO05D003294 1.6e-12 76.6 100 46.0
CDE04G0364 Ceratophyllum demersum HOM05D001552 ORTHO05D003294 1.6e-12 76.6 97 46.4
CBR_g36859 Chara braunii HOM05D001552 ORTHO05D003294 1.6e-12 76.6 92 45.7
Nn5g30352 Nelumbo nucifera HOM05D001552 ORTHO05D003294 1.6e-12 76.6 97 46.4
PSO541G0812 Papaver somniferum HOM05D001552 ORTHO05D003294 2.1e-12 76.3 97 46.4
PSO675G0197 Papaver somniferum HOM05D001552 ORTHO05D003294 2.1e-12 76.3 97 46.4
TWI34G0022 Tripterygium wilfordii HOM05D001552 ORTHO05D003294 2.1e-12 76.3 104 44.2
Lj9C478T4 Lonicera japonica HOM05D001552 ORTHO05D003294 2.7e-12 75.9 97 45.4
COL.COLO4_12119 Corchorus olitorius HOM05D001552 ORTHO05D003294 3.5e-12 75.5 97 45.4
Nn1g04789 Nelumbo nucifera HOM05D001552 ORTHO05D003294 3.5e-12 75.5 97 46.4
Eucgr.F02713 Eucalyptus grandis HOM05D001552 ORTHO05D003294 4.6e-12 75.1 91 47.3
Medtr1g098970 Medicago truncatula HOM05D001552 ORTHO05D003294 4.6e-12 75.1 89 46.1
Pp3c4_28500 Physcomitrium patens HOM05D001552 ORTHO05D003294 4.6e-12 75.1 98 44.9
Psat6g193320 Pisum sativum HOM05D001552 ORTHO05D003294 4.6e-12 75.1 89 47.2
Lj5g0023968 Lotus japonicus HOM05D001552 ORTHO05D003294 6.0e-12 74.7 91 48.4
C08p42280 Brassica napus HOM05D001552 ORTHO05D013172 7.8e-12 74.3 94 54.3
BolC8t51788H Brassica oleracea HOM05D001552 ORTHO05D013172 1.0e-11 73.9 90 55.6
HanXRQChr10g0306561 Helianthus annuus HOM05D001552 ORTHO05D003294 1.0e-11 73.9 93 44.1
Hund00531 Selenicereus undatus HOM05D001552 ORTHO05D003294 1.3e-11 73.6 91 46.2
A09p58980 Brassica napus HOM05D001552 ORTHO05D013172 1.7e-11 73.2 94 54.3
BraA09t41284Z Brassica rapa HOM05D001552 ORTHO05D013172 1.7e-11 73.2 94 54.3
Mapoly0112s0026 Marchantia polymorpha HOM05D001552 ORTHO05D003294 1.7e-11 73.2 98 41.8
MCO01G059 Micromonas commoda HOM05D001552 ORTHO05D003294 1.7e-11 73.2 92 46.7
BcaC07g41468 Brassica carinata HOM05D002847 ORTHO05D003155 2.3e-11 72.8 87 50.6
C08p42270 Brassica napus HOM05D003394 ORTHO05D004183 2.3e-11 72.8 87 50.6
BolC8t51787H Brassica oleracea HOM05D003394 ORTHO05D004183 2.3e-11 72.8 87 50.6
Migut.B00231 Erythranthe guttata HOM05D001552 ORTHO05D003294 2.3e-11 72.8 96 44.8
Prupe.2G099300 Prunus persica HOM05D001552 ORTHO05D003294 3.9e-11 72.0 91 48.4
A09p58970 Brassica napus HOM05D003394 ORTHO05D027701 8.6e-11 70.9 88 48.9
BraA09t41283Z Brassica rapa HOM05D003394 ORTHO05D027701 8.6e-11 70.9 88 48.9
AUR62005931 Chenopodium quinoa HOM05D001552 ORTHO05D003294 8.6e-11 70.9 91 46.2
AUR62005934 Chenopodium quinoa HOM05D001552 ORTHO05D003294 8.6e-11 70.9 91 46.2
PGSC0003DMG400012783 Solanum tuberosum HOM05D001552 ORTHO05D003294 8.6e-11 70.9 80 48.8
ATR0749G103 Amborella trichopoda HOM05D001552 ORTHO05D003294 1.1e-10 70.5 93 45.2
AL6G19200 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 1.5e-10 70.1 87 49.4
FAN03G2186 Fragaria x ananassa HOM05D001552 ORTHO05D003294 1.5e-10 70.1 89 47.2
Os05g0592600 Oryza sativa ssp. japonica HOM05D001552 ORTHO05D003294 1.5e-10 70.1 103 44.7
Carub.0006s0745 Capsella rubella HOM05D001552 ORTHO05D027701 1.9e-10 69.7 110 42.7
CAN.G371.7 Capsicum annuum HOM05D001552 ORTHO05D003294 1.9e-10 69.7 91 44.0
PSO541G1760 Papaver somniferum HOM05D001552 ORTHO05D003294 1.9e-10 69.7 97 44.3
PSO541G3527 Papaver somniferum HOM05D001552 ORTHO05D003294 1.9e-10 69.7 97 44.3
Potri.019G103600 Populus trichocarpa HOM05D001552 ORTHO05D003294 1.9e-10 69.7 97 42.3
Zm00001eb345280 Zea mays HOM05D001552 ORTHO05D003294 1.9e-10 69.7 97 44.3
AL6G18990 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 2.5e-10 69.3 87 48.3
CSS0040061 Camellia sinensis var. sinensis HOM05D001552 ORTHO05D003294 2.5e-10 69.3 96 41.7
CSS0046977 Camellia sinensis var. sinensis HOM05D001552 ORTHO05D003294 4.3e-10 68.6 97 40.2
Carub.0002s2361 Capsella rubella HOM05D001552 ORTHO05D003294 1.6e-09 66.6 97 40.2
Rhsim02G0211100 Rhododendron simsii HOM05D001552 ORTHO05D003294 3.6e-09 65.5 92 44.6
Hund21083 Selenicereus undatus HOM05D001552 ORTHO05D003294 3.6e-09 65.5 89 44.9
Carub.0001s2060 Capsella rubella HOM05D001552 ORTHO05D003294 4.7e-09 65.1 97 42.3
Cc01_g07350 Coffea canephora HOM05D001552 ORTHO05D003294 1.1e-08 63.9 102 40.2
Thhalv10021382m.g Eutrema salsugineum HOM05D001552 ORTHO05D013172 1.8e-08 63.2 80 51.2
RcHm_v2.0_Chr4g0445721 Rosa chinensis HOM05D001552 ORTHO05D003294 1.8e-08 63.2 96 39.6
TAR625G0242 Trochodendron aralioides HOM05D001552 ORTHO05D003294 1.8e-08 63.2 87 43.7
DCAR_013502 Daucus carota HOM05D001552 ORTHO05D003294 4.0e-08 62.0 90 40.0
AT1G76720 Arabidopsis thaliana HOM05D001552 ORTHO05D003294 5.2e-08 61.6 92 41.3
PRCOL_00000626 Prasinoderma coloniale HOM05D001552 ORTHO05D003294 8.9e-08 60.8 95 34.7
ECA248G2086 Erigeron canadensis HOM05D001552 ORTHO05D003294 3.4e-07 58.9 91 40.7
Atru.chr13.2171 Acer truncatum HOM05D001552 ORTHO05D003294 1.3e-06 57.0 54 53.7
A02p35690 Brassica napus HOM05D001552 ORTHO05D003294 1.7e-06 56.6 68 45.6
BcaB08g34901 Brassica carinata HOM05D001552 ORTHO05D027701 6.4e-06 54.7 85 42.4
Cre02.g078100 Chlamydomonas reinhardtii HOM05D001552 ORTHO05D003294 6.4e-06 54.7 93 37.6


User provided reference genes

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