Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G18560 Arabidopsis lyrata HOM05D004692 ORTHO05D006291 6.8e-234 813.5 384 100.0
AT5G08170 Arabidopsis thaliana HOM05D004692 ORTHO05D006291 3.7e-224 781.2 384 95.8
Thhalv10013807m.g Eutrema salsugineum HOM05D004692 ORTHO05D006291 9.2e-215 750.0 384 90.1
Carub.0006s0707 Capsella rubella HOM05D004692 ORTHO05D006291 3.9e-213 744.6 378 91.0
A03p03660 Brassica napus HOM05D004692 ORTHO05D006291 1.1e-212 743.0 386 89.4
BraA03t09714Z Brassica rapa HOM05D004692 ORTHO05D006291 1.2e-211 739.6 386 88.6
C03p04140 Brassica napus HOM05D004692 ORTHO05D006291 2.1e-211 738.8 385 88.3
A10p28500 Brassica napus HOM05D004692 ORTHO05D006291 4.7e-211 737.6 381 89.0
Sp6g34780 Schrenkiella parvula HOM05D004692 ORTHO05D006291 6.2e-211 737.3 382 89.8
C09p68780 Brassica napus HOM05D004692 ORTHO05D006291 3.1e-210 734.9 383 89.6
BolC3t12946H Brassica oleracea HOM05D004692 ORTHO05D006291 8.9e-210 733.4 386 87.8
BcaB08g37277 Brassica carinata HOM05D004692 ORTHO05D006291 1.5e-209 732.6 385 88.8
BcaNung05091 Brassica carinata HOM05D004692 ORTHO05D006291 5.8e-209 730.7 387 88.1
Aa31LG3G18370 Aethionema arabicum HOM05D004692 ORTHO05D006291 7.5e-201 703.7 413 80.1
BolC9t59625H Brassica oleracea HOM05D004692 ORTHO05D006291 2.1e-198 695.7 383 85.9
BraA10t44898Z Brassica rapa HOM05D004692 ORTHO05D006291 6.0e-198 694.1 382 84.8
BcaB01g05624 Brassica carinata HOM05D004692 ORTHO05D006291 2.3e-189 665.6 386 81.6
THA.LOC104819389 Tarenaya hassleriana HOM05D004692 ORTHO05D006291 2.3e-189 665.6 374 81.0
AUR62036914 Chenopodium quinoa HOM05D004692 ORTHO05D006291 6.2e-179 630.9 367 77.7
TWI81G0688 Tripterygium wilfordii HOM05D004692 ORTHO05D006291 2.6e-177 625.5 380 73.7
AUR62032158 Chenopodium quinoa HOM05D004692 ORTHO05D006291 5.8e-177 624.4 367 77.4
MD14G1218000 Malus domestica HOM05D004692 ORTHO05D006291 1.2e-174 616.7 376 74.2
HanXRQChr16g0501991 Helianthus annuus HOM05D004692 ORTHO05D006291 3.5e-174 615.1 375 74.4
FAN13G2141 Fragaria x ananassa HOM05D004692 ORTHO05D006291 6.0e-174 614.4 370 75.9
RcHm_v2.0_Chr7g0184081 Rosa chinensis HOM05D004692 ORTHO05D006291 6.0e-174 614.4 366 76.8
Dinv36841 Davidia involucrata HOM05D004692 ORTHO05D006291 1.0e-173 613.6 367 76.0
Hma1.2p1_0744F.1_g211680 Hydrangea macrophylla HOM05D004692 ORTHO05D006291 1.0e-173 613.6 373 73.7
DCAR_015115 Daucus carota HOM05D004692 ORTHO05D006291 1.3e-173 613.2 369 75.3
Prupe.5G211900 Prunus persica HOM05D004692 ORTHO05D006291 1.3e-173 613.2 376 74.5
Ciclev10020592m.g Citrus clementina HOM05D004692 ORTHO05D006291 2.3e-173 612.5 378 73.5
PSO017G3616 Papaver somniferum HOM05D004692 ORTHO05D006291 3.9e-173 611.7 367 74.4
Peaxi162Scf00119g00017 Petunia axillaris HOM05D004692 ORTHO05D006291 3.9e-173 611.7 369 75.6
EL10Ac5g11213 Beta vulgaris HOM05D004692 ORTHO05D006291 8.7e-173 610.5 373 74.5
Potri.015G055300 Populus trichocarpa HOM05D004692 ORTHO05D006291 8.7e-173 610.5 372 74.5
DCAR_015116 Daucus carota HOM05D004692 ORTHO05D006291 2.5e-172 609.0 369 74.5
Lsat_1_v5_gn_4_112840 Lactuca sativa HOM05D004692 ORTHO05D006291 2.5e-172 609.0 377 73.7
MD06G1207500 Malus domestica HOM05D004692 ORTHO05D006291 2.1e-171 605.9 376 72.6
FvH4_5g13050 Fragaria vesca HOM05D004692 ORTHO05D006291 2.8e-171 605.5 370 75.1
CiPaw.15G118000 Carya illinoinensis HOM05D004692 ORTHO05D006291 3.6e-171 605.1 367 75.7
FAN18G3467 Fragaria x ananassa HOM05D004692 ORTHO05D006291 3.6e-171 605.1 370 75.1
Lj5A139T82 Lonicera japonica HOM05D004692 ORTHO05D006291 3.6e-171 605.1 369 74.3
Nitab4.5_0007617g0010 Nicotiana tabacum HOM05D004692 ORTHO05D006291 3.6e-171 605.1 381 72.4
GSVIVG01008185001 Vitis vinifera HOM05D004692 ORTHO05D006291 4.8e-171 604.7 371 75.7
CANSAT80G0730 Cannabis sativa HOM05D004692 ORTHO05D006291 1.4e-170 603.2 369 73.4
Hund09975 Selenicereus undatus HOM05D004692 ORTHO05D006291 1.8e-170 602.8 371 74.4
Sopen12g019180 Solanum pennellii HOM05D004692 ORTHO05D006291 1.8e-170 602.8 369 74.5
ECA232G0381 Erigeron canadensis HOM05D004692 ORTHO05D006291 4.0e-170 601.7 375 72.0
PSO478G1466 Papaver somniferum HOM05D004692 ORTHO05D006291 4.0e-170 601.7 367 72.8
Phvul.003G180900 Phaseolus vulgaris HOM05D004692 ORTHO05D006291 5.3e-170 601.3 368 74.7
Solyc12g038970.3 Solanum lycopersicum HOM05D004692 ORTHO05D006291 5.3e-170 601.3 369 74.0
Atru.chr9.678 Acer truncatum HOM05D004692 ORTHO05D006291 2.0e-169 599.4 379 73.6
Ah.11g047310 Amaranthus hybridus HOM05D004692 ORTHO05D006291 2.0e-169 599.4 371 74.4
Rhsim08G0150000 Rhododendron simsii HOM05D004692 ORTHO05D006291 2.0e-169 599.4 367 73.8
Cc04_g07930 Coffea canephora HOM05D004692 ORTHO05D006291 4.5e-169 598.2 372 74.2
Lalb_Chr13g0302611 Lupinus albus HOM05D004692 ORTHO05D006291 4.5e-169 598.2 373 73.2
Manes.01G023900 Manihot esculenta HOM05D004692 ORTHO05D006291 4.5e-169 598.2 370 74.1
QL10p021836 Quercus lobata HOM05D004692 ORTHO05D006291 5.8e-169 597.8 369 72.9
PGSC0003DMG400000653 Solanum tuberosum HOM05D004692 ORTHO05D006291 5.8e-169 597.8 369 74.3
arahy.Tifrunner.gnm1.ann1.51KNRK Arachis hypogaea HOM05D004692 ORTHO05D006291 7.6e-169 597.4 366 74.3
QL10p021731 Quercus lobata HOM05D004692 ORTHO05D006291 1.7e-168 596.3 369 73.2
Sc12g0006990 Simmondsia chinensis HOM05D004692 ORTHO05D006291 1.7e-168 596.3 371 72.8
TPR.G2028 Trifolium pratense HOM05D004692 ORTHO05D006291 1.7e-168 596.3 369 74.0
arahy.Tifrunner.gnm1.ann1.F96WR3 Arachis hypogaea HOM05D004692 ORTHO05D006291 4.9e-168 594.7 366 73.8
Gohir.D07G062400 Gossypium hirsutum HOM05D004692 ORTHO05D006291 6.4e-168 594.3 371 72.8
CAN.G471.4 Capsicum annuum HOM05D004692 ORTHO05D006291 8.4e-168 594.0 378 71.7
Hund09942 Selenicereus undatus HOM05D004692 ORTHO05D006291 1.4e-167 593.2 389 71.5
Ah.02g120970 Amaranthus hybridus HOM05D004692 ORTHO05D006291 3.2e-167 592.0 371 73.6
CsaV3_1G003170 Cucumis sativus L. HOM05D004692 ORTHO05D006291 3.2e-167 592.0 367 73.6
Glyma.17G083400 Glycine max HOM05D004692 ORTHO05D006291 3.2e-167 592.0 368 73.9
Gohir.A07G057600 Gossypium hirsutum HOM05D004692 ORTHO05D006291 4.2e-167 591.7 371 72.2
Oeu058039.1 Olea europaea HOM05D004692 ORTHO05D006291 4.2e-167 591.7 371 72.0
vmacro17655 Vaccinium macrocarpon HOM05D004692 ORTHO05D006291 7.1e-167 590.9 367 72.8
CSS0001909 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 1.6e-166 589.7 367 71.4
Medtr4g112810 Medicago truncatula HOM05D004692 ORTHO05D006291 1.6e-166 589.7 373 72.1
Gorai.001G065900 Gossypium raimondii HOM05D004692 ORTHO05D006291 2.1e-166 589.3 372 72.6
arahy.Tifrunner.gnm1.ann1.6286TX Arachis hypogaea HOM05D004692 ORTHO05D006291 4.6e-166 588.2 374 72.7
CSS0041638 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 1.0e-165 587.0 367 71.1
MELO3C017264.2 Cucumis melo HOM05D004692 ORTHO05D006291 1.3e-165 586.6 366 73.0
Actinidia01418 Actinidia chinensis HOM05D004692 ORTHO05D006291 8.7e-165 583.9 381 70.3
Migut.J01255 Erythranthe guttata HOM05D004692 ORTHO05D006291 1.1e-164 583.6 375 69.9
MBI14_g16236_MAGBIO Magnolia biondii HOM05D004692 ORTHO05D006291 1.1e-164 583.6 368 72.6
Psat4g044040 Pisum sativum HOM05D004692 ORTHO05D006291 1.1e-164 583.6 369 72.1
Aqoxy3G00609 Aquilegia oxysepala HOM05D004692 ORTHO05D006291 1.9e-164 582.8 373 71.6
Sed0023319 Sechium edule HOM05D004692 ORTHO05D006291 2.5e-164 582.4 363 71.9
MSTRG.22946 Avicennia marina HOM05D004692 ORTHO05D006291 7.4e-164 580.9 368 71.2
Ca_21742_v3 Cicer arietinum L. HOM05D004692 ORTHO05D006291 2.1e-163 579.3 373 71.0
Nn4g23609 Nelumbo nucifera HOM05D004692 ORTHO05D006291 8.1e-163 577.4 372 72.6
VMungo1215G1525 Vigna mungo HOM05D004692 ORTHO05D006291 8.1e-163 577.4 368 72.3
Lj4g0008523 Lotus japonicus HOM05D004692 ORTHO05D006291 4.0e-162 575.1 373 70.5
ClCG06G015290 Citrullus lanatus HOM05D004692 ORTHO05D006291 5.3e-162 574.7 367 71.1
arahy.Tifrunner.gnm1.ann1.RJWR3V Arachis hypogaea HOM05D004692 ORTHO05D006291 6.9e-162 574.3 366 72.1
CDE06G1750 Ceratophyllum demersum HOM05D004692 ORTHO05D006291 1.2e-161 573.5 369 70.5
Eucgr.B00659 Eucalyptus grandis HOM05D004692 ORTHO05D006291 4.5e-161 571.6 372 69.6
HanXRQChr16g0501981 Helianthus annuus HOM05D004692 ORTHO05D006291 1.0e-160 570.5 426 63.6
FAN08G1512 Fragaria x ananassa HOM05D004692 ORTHO05D006291 1.9e-159 566.2 344 74.4
PGR083G2684 Punica granatum HOM05D004692 ORTHO05D006291 1.9e-159 566.2 371 69.5
Sabra15G0080100 Salix brachista HOM05D004692 ORTHO05D006291 1.9e-159 566.2 457 60.6
CDE07G1308 Ceratophyllum demersum HOM05D004692 ORTHO05D006291 7.1e-159 564.3 373 69.4
CARHR205010 Cardamine hirsuta HOM05D004692 ORTHO05D006291 1.3e-157 560.1 286 90.6
ATR0691G179 Amborella trichopoda HOM05D004692 ORTHO05D006291 3.9e-157 558.5 374 67.6
SalBow5G2075 Salvia bowleyana HOM05D004692 ORTHO05D006291 5.1e-157 558.1 384 68.5
SGA_v2.0_scaffold56G20037 Striga asiatica HOM05D004692 ORTHO05D006291 1.6e-155 553.1 356 69.9
SHI18993 Sapria himalayana HOM05D004692 ORTHO05D006291 2.4e-154 549.3 401 64.6
Mapoly0016s0188 Marchantia polymorpha HOM05D004692 ORTHO05D006291 5.9e-153 544.7 370 66.8
Os04g0466600 Oryza sativa ssp. japonica HOM05D004692 ORTHO05D006291 1.7e-152 543.1 371 67.7
Actinidia10430 Actinidia chinensis HOM05D004692 ORTHO05D006291 2.9e-152 542.3 372 68.5
HPP92_019130 Vanilla planifolia HOM05D004692 ORTHO05D006291 1.1e-151 540.4 381 66.4
Thecc.03G112800 Theobroma cacao HOM05D004692 ORTHO05D006291 1.2e-150 537.0 371 68.5
SMO115G0272 Selaginella moellendorffii HOM05D004692 ORTHO05D006291 3.5e-150 535.4 367 65.9
TAR374G0590 Trochodendron aralioides HOM05D004692 ORTHO05D006291 3.0e-149 532.3 325 73.5
Nitab4.5_0000208g0050 Nicotiana tabacum HOM05D004692 ORTHO05D006291 5.1e-149 531.6 403 63.8
Duzib205G0043 Durio zibethinus HOM05D004692 ORTHO05D006291 7.4e-148 527.7 374 66.8
Pp3c14_21790 Physcomitrium patens HOM05D004692 ORTHO05D006291 1.3e-147 526.9 372 64.0
AagrBONN_evm.TU.Sc2ySwM_117.2364 Anthoceros agrestis HOM05D004692 ORTHO05D006291 3.1e-146 522.3 368 64.9
HPP92_019140 Vanilla planifolia HOM05D004692 ORTHO05D006291 1.4e-141 506.9 360 66.1
unitig_26.g9673 Utricularia gibba HOM05D004692 ORTHO05D006291 8.8e-141 504.2 369 62.9
Zm00001eb424480 Zea mays HOM05D004692 ORTHO05D006291 3.2e-135 485.7 413 58.8
Haze_18550 Corylus avellana HOM05D004692 ORTHO05D006291 1.0e-133 480.7 308 71.8
Ca_25716_v3 Cicer arietinum L. HOM05D004692 ORTHO05D006291 7.7e-129 464.5 294 70.1
CBR_g22406 Chara braunii HOM05D004692 ORTHO05D006291 3.6e-126 455.7 385 58.4
arahy.Tifrunner.gnm1.ann1.U185V9 Arachis hypogaea HOM05D004692 ORTHO05D006291 1.7e-123 446.8 366 59.8
Medtr4g110140 Medicago truncatula HOM05D004692 ORTHO05D006291 2.0e-100 370.2 386 49.2
Sc12g0006960 Simmondsia chinensis HOM05D004692 ORTHO05D006291 5.4e-98 362.1 219 76.3
Pp3c13_22750 Physcomitrium patens HOM05D004692 ORTHO05D006291 1.3e-96 357.5 383 45.4
Cfa019856 Carpinus fangiana HOM05D004692 ORTHO05D006291 8.6e-96 354.8 343 53.6
Cre01.g009350 Chlamydomonas reinhardtii HOM05D004692 ORTHO05D006291 4.4e-92 342.4 382 45.0
CSS0041488 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 6.0e-89 332.0 250 62.0
PRCOL_00005028 Prasinoderma coloniale HOM05D004692 ORTHO05D006291 9.5e-87 324.7 404 43.3
CSS0018290 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 1.6e-86 323.9 228 65.8
CSS0026593 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 1.7e-83 313.9 220 65.5
Hund10163 Selenicereus undatus HOM05D004692 ORTHO05D006291 3.9e-80 302.8 366 44.5
CSS0021853 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 6.2e-78 295.4 204 64.2
CSS0048768 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 3.3e-71 273.1 164 70.7
Cpa.g.c37454 Carica papaya HOM05D004692 ORTHO05D006291 1.3e-67 261.2 165 68.5
Lsat_1_v5_gn_5_119361 Lactuca sativa HOM05D004692 ORTHO05D006291 1.5e-60 237.7 171 68.4
Cre01.g053300 Chlamydomonas reinhardtii HOM05D004692 ORTHO05D006291 2.3e-48 197.2 480 30.4
C05p13090 Brassica napus HOM05D004692 ORTHO05D006291 5.6e-47 192.6 100 88.0
BcaC05g25434 Brassica carinata HOM05D004692 ORTHO05D006291 7.4e-47 192.2 100 88.0
Cpa.g.c37318 Carica papaya HOM05D004692 ORTHO05D006291 1.2e-41 174.9 93 81.7
FAN04G1239 Fragaria x ananassa HOM05D004692 ORTHO05D006291 4.6e-33 146.4 134 59.7
Ca_29974_v3 Cicer arietinum L. HOM05D000837 ORTHO05D008386 2.9e-27 127.1 77 80.5
Lsat_1_v5_gn_3_89601 Lactuca sativa HOM05D004692 ORTHO05D006291 7.2e-26 122.5 93 65.6
CDE06G1955 Ceratophyllum demersum HOM05D004692 ORTHO05D019764 9.7e-23 112.1 341 27.0
arahy.Tifrunner.gnm1.ann1.5N8491 Arachis hypogaea HOM05D004692 ORTHO05D019764 1.1e-13 82.0 71 54.9
RcHm_v2.0_Chr2g0129061 Rosa chinensis HOM05D004692 ORTHO05D006291 1.1e-13 82.0 43 83.7
RcHm_v2.0_Chr2g0128461 Rosa chinensis HOM05D004692 ORTHO05D019764 1.8e-13 81.3 163 31.9
SGA_v2.0_scaffold26G11385 Striga asiatica HOM05D004692 ORTHO05D019764 4.1e-13 80.1 47 76.6
RcHm_v2.0_Chr4g0407261 Rosa chinensis HOM05D004692 ORTHO05D019764 4.5e-12 76.6 47 74.5
RcHm_v2.0_Chr2g0164691 Rosa chinensis HOM05D004692 ORTHO05D019764 6.1e-09 66.2 40 77.5
BraA01t02993Z Brassica rapa HOM05D004692 ORTHO05D006291 1.8e-08 64.7 32 87.5
BraA09t36800Z Brassica rapa HOM05D004692 ORTHO05D006291 1.8e-08 64.7 32 87.5


User provided reference genes

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