Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G14760 Arabidopsis lyrata HOM05D011717 ORTHO05D013194 9.1e-212 740.0 369 100.0
Carub.0006s0190 Capsella rubella HOM05D011717 ORTHO05D013194 1.9e-44 184.1 371 34.5
BcaC06g32379 Brassica carinata HOM05D011717 ORTHO05D013194 3.3e-28 130.2 402 30.1
C09p70140 Brassica napus HOM05D011717 ORTHO05D013194 3.3e-28 130.2 402 30.1
BolC9t59755H Brassica oleracea HOM05D011717 ORTHO05D013194 4.3e-28 129.8 402 30.1
A10p29720 Brassica napus HOM05D011717 ORTHO05D013194 2.8e-27 127.1 388 28.9
A10p29750 Brassica napus HOM05D011717 ORTHO05D013194 1.9e-23 114.4 367 30.0
BraA10t45013Z Brassica rapa HOM05D011717 ORTHO05D013194 2.5e-15 87.4 374 27.3
BraA10t45016Z Brassica rapa HOM05D011717 ORTHO05D013194 2.5e-15 87.4 372 26.3
BolC9t59759H Brassica oleracea HOM05D011717 ORTHO05D013194 3.3e-12 77.0 216 29.6
Pp3c12_11890 Physcomitrium patens HOM05D002891 ORTHO05D003369 1.8e-10 71.2 169 30.2
Aa31LG8G14490 Aethionema arabicum HOM05D008043 ORTHO05D015257 6.9e-10 69.3 202 29.7
SEGI_24209 Sequoiadendron giganteum HOM05D002891 ORTHO05D003369 9.0e-10 68.9 183 28.4
GSVIVG01024676001 Vitis vinifera HOM05D002891 ORTHO05D003369 9.0e-10 68.9 163 30.1
Os03g0296400 Oryza sativa ssp. japonica HOM05D002891 ORTHO05D003369 1.2e-09 68.6 320 25.9
SEGI_04226 Sequoiadendron giganteum HOM05D002891 ORTHO05D003369 1.2e-09 68.6 183 29.0
CDE05G1846 Ceratophyllum demersum HOM05D002891 ORTHO05D003369 1.5e-09 68.2 163 30.7
AagrBONN_evm.TU.Sc2ySwM_117.1662 Anthoceros agrestis HOM05D002891 ORTHO05D003369 2.0e-09 67.8 169 27.8
Nn2g13233 Nelumbo nucifera HOM05D002891 ORTHO05D003369 2.0e-09 67.8 183 27.9
Dinv21770 Davidia involucrata HOM05D002891 ORTHO05D003369 3.4e-09 67.0 183 27.9
Eucgr.G03085 Eucalyptus grandis HOM05D002891 ORTHO05D003369 3.4e-09 67.0 160 30.6
PSO017G0881 Papaver somniferum HOM05D002891 ORTHO05D003369 3.4e-09 67.0 163 28.8
PSO170G4745 Papaver somniferum HOM05D002891 ORTHO05D003369 3.4e-09 67.0 163 28.8
CSS0001380 Camellia sinensis var. sinensis HOM05D002891 ORTHO05D003369 4.5e-09 66.6 163 30.7
CSS0002895 Camellia sinensis var. sinensis HOM05D002891 ORTHO05D003369 4.5e-09 66.6 163 30.7
Cfa021244 Carpinus fangiana HOM05D002891 ORTHO05D003369 4.5e-09 66.6 163 29.4
Haze_17267 Corylus avellana HOM05D002891 ORTHO05D003369 4.5e-09 66.6 163 29.4
Medtr3g071540 Medicago truncatula HOM05D002891 ORTHO05D003369 4.5e-09 66.6 163 30.1
Potri.010G184900 Populus trichocarpa HOM05D002891 ORTHO05D003369 4.5e-09 66.6 183 29.0
Sabra10G0142200 Salix brachista HOM05D002891 ORTHO05D003369 5.9e-09 66.2 159 30.8
THA.LOC104810120 Tarenaya hassleriana HOM05D002891 ORTHO05D003369 5.9e-09 66.2 163 30.1
unitig_60.g25669 Utricularia gibba HOM05D002891 ORTHO05D003369 5.9e-09 66.2 163 28.8
Zm00001eb396830 Zea mays HOM05D002891 ORTHO05D003369 5.9e-09 66.2 313 25.9
CBR_g4284 Chara braunii HOM05D002891 ORTHO05D003369 7.7e-09 65.9 140 29.3
Ciclev10031993m.g Citrus clementina HOM05D002891 ORTHO05D003369 7.7e-09 65.9 163 31.3
Mapoly0015s0123 Marchantia polymorpha HOM05D002891 ORTHO05D003369 7.7e-09 65.9 169 27.8
TAR636G0387 Trochodendron aralioides HOM05D002891 ORTHO05D003369 7.7e-09 65.9 163 29.4
Zm00001eb013710 Zea mays HOM05D002891 ORTHO05D003369 7.7e-09 65.9 320 25.9
A04p29890 Brassica napus HOM05D002891 ORTHO05D003369 1.0e-08 65.5 169 30.2
A10p29770 Brassica napus HOM05D011717 ORTHO05D013194 1.0e-08 65.5 82 50.0
BraA04t18519Z Brassica rapa HOM05D002891 ORTHO05D003369 1.0e-08 65.5 169 30.2
BraA10t45017Z Brassica rapa HOM05D011717 ORTHO05D013194 1.0e-08 65.5 82 50.0
CDE02G4388 Ceratophyllum demersum HOM05D002891 ORTHO05D003369 1.0e-08 65.5 163 28.8
Nn2g10975 Nelumbo nucifera HOM05D002891 ORTHO05D003369 1.0e-08 65.5 183 26.8
PSO063G3676 Papaver somniferum HOM05D002891 ORTHO05D003369 1.0e-08 65.5 159 28.9
PSO782G4916 Papaver somniferum HOM05D002891 ORTHO05D003369 1.0e-08 65.5 159 28.9
Pp3c3_32110 Physcomitrium patens HOM05D002891 ORTHO05D003369 1.0e-08 65.5 166 27.7
PGR142G0786 Punica granatum HOM05D002891 ORTHO05D003369 1.0e-08 65.5 163 30.1
Actinidia00662 Actinidia chinensis HOM05D002891 ORTHO05D003369 1.3e-08 65.1 163 30.7
ATR0315G011 Amborella trichopoda HOM05D002891 ORTHO05D003369 1.3e-08 65.1 183 27.9
CiPaw.02G195200 Carya illinoinensis HOM05D002891 ORTHO05D003369 1.3e-08 65.1 183 27.9
Medtr3g071550 Medicago truncatula HOM05D002891 ORTHO05D003369 1.3e-08 65.1 163 29.4
Prupe.2G255200 Prunus persica HOM05D002891 ORTHO05D003369 1.3e-08 65.1 183 28.4
Aa31LG11G6540 Aethionema arabicum HOM05D002891 ORTHO05D003369 1.7e-08 64.7 283 27.6
Gohir.D12G226800 Gossypium hirsutum HOM05D002891 ORTHO05D003369 1.7e-08 64.7 134 32.1
Gorai.008G242900 Gossypium raimondii HOM05D002891 ORTHO05D003369 1.7e-08 64.7 134 32.1
Lalb_Chr08g0231531 Lupinus albus HOM05D002891 ORTHO05D003369 1.7e-08 64.7 183 27.3
MD01G1157300 Malus domestica HOM05D002891 ORTHO05D003369 1.7e-08 64.7 183 27.9
TAR209G0005 Trochodendron aralioides HOM05D002891 ORTHO05D003369 1.7e-08 64.7 163 29.4
CANSAT25G3110 Cannabis sativa HOM05D002891 ORTHO05D003369 2.2e-08 64.3 163 28.8
CANSAT35G0284 Cannabis sativa HOM05D002891 ORTHO05D003369 2.2e-08 64.3 163 28.8
CANSAT56G2914 Cannabis sativa HOM05D002891 ORTHO05D003369 2.2e-08 64.3 163 28.8
CARHR135360 Cardamine hirsuta HOM05D002891 ORTHO05D003369 2.2e-08 64.3 163 29.4
Cpa.g.sc1.187 Carica papaya HOM05D002891 ORTHO05D003369 2.2e-08 64.3 163 29.4
FvH4_7g25050 Fragaria vesca HOM05D002891 ORTHO05D003369 2.2e-08 64.3 134 32.8
FAN01G2654 Fragaria x ananassa HOM05D002891 ORTHO05D003369 2.2e-08 64.3 134 32.8
FAN03G2517 Fragaria x ananassa HOM05D002891 ORTHO05D003369 2.2e-08 64.3 134 32.8
FAN06G4729 Fragaria x ananassa HOM05D002891 ORTHO05D003369 2.2e-08 64.3 134 32.8
FAN10G1006 Fragaria x ananassa HOM05D002891 ORTHO05D003369 2.2e-08 64.3 134 32.8
Os07g0692800 Oryza sativa ssp. japonica HOM05D002891 ORTHO05D003369 2.2e-08 64.3 190 26.8
RcHm_v2.0_Chr1g0370911 Rosa chinensis HOM05D002891 ORTHO05D003369 2.2e-08 64.3 134 32.8
AagrBONN_evm.TU.Sc2ySwM_368.2358 Anthoceros agrestis HOM05D002891 ORTHO05D003369 2.9e-08 63.9 169 26.0
A03p22700 Brassica napus HOM05D002891 ORTHO05D003369 2.9e-08 63.9 163 30.7
BraA03t11494Z Brassica rapa HOM05D002891 ORTHO05D003369 2.9e-08 63.9 163 30.7
Ca_15151_v3 Cicer arietinum L. HOM05D002891 ORTHO05D003369 2.9e-08 63.9 163 29.4
FAN01G0902 Fragaria x ananassa HOM05D002891 ORTHO05D003369 2.9e-08 63.9 134 32.1
Gohir.A12G224100 Gossypium hirsutum HOM05D002891 ORTHO05D003369 2.9e-08 63.9 134 32.1
MD07G1226100 Malus domestica HOM05D002891 ORTHO05D003369 2.9e-08 63.9 189 28.0
Potri.008G072500 Populus trichocarpa HOM05D002891 ORTHO05D003369 2.9e-08 63.9 183 29.0
Rhsim09G0179900 Rhododendron simsii HOM05D002891 ORTHO05D003369 2.9e-08 63.9 163 30.1
Sabra08G0053700 Salix brachista HOM05D002891 ORTHO05D003369 2.9e-08 63.9 134 32.8
TPR.G30161 Trifolium pratense HOM05D002891 ORTHO05D003369 2.9e-08 63.9 183 27.9
TAR633G1073 Trochodendron aralioides HOM05D002891 ORTHO05D003369 2.9e-08 63.9 163 28.8
HPP92_023907 Vanilla planifolia HOM05D002891 ORTHO05D003369 2.9e-08 63.9 174 29.3
AL6G15360 Arabidopsis lyrata HOM05D002891 ORTHO05D003369 3.8e-08 63.5 183 26.8
Sp4g22620 Schrenkiella parvula HOM05D002891 ORTHO05D003369 3.8e-08 63.5 163 30.1
VMungo0540G1064 Vigna mungo HOM05D002891 ORTHO05D003369 3.8e-08 63.5 163 29.4
COL.COLO4_23785 Corchorus olitorius HOM05D002891 ORTHO05D003369 5.0e-08 63.2 159 30.2
Dinv10591 Davidia involucrata HOM05D002891 ORTHO05D003369 5.0e-08 63.2 163 28.8
Duzib205G1522 Durio zibethinus HOM05D002891 ORTHO05D003369 5.0e-08 63.2 159 30.2
VMungo1383G2156 Vigna mungo HOM05D002891 ORTHO05D003369 5.0e-08 63.2 163 28.8
BcaC02g07338 Brassica carinata HOM05D002891 ORTHO05D003369 6.5e-08 62.8 163 30.1
C04p67960 Brassica napus HOM05D002891 ORTHO05D003369 6.5e-08 62.8 163 30.1
BolC4t28300H Brassica oleracea HOM05D002891 ORTHO05D003369 6.5e-08 62.8 163 30.1
Medtr3g071560 Medicago truncatula HOM05D002891 ORTHO05D003369 6.5e-08 62.8 183 27.3
Phvul.001G245600 Phaseolus vulgaris HOM05D002891 ORTHO05D003369 6.5e-08 62.8 321 25.2
Sc21g0005180 Simmondsia chinensis HOM05D002891 ORTHO05D003369 6.5e-08 62.8 134 30.6
vmacro10006 Vaccinium macrocarpon HOM05D002891 ORTHO05D003369 6.5e-08 62.8 163 29.4
Aqoxy7G01068 Aquilegia oxysepala HOM05D002891 ORTHO05D003369 8.5e-08 62.4 163 27.6
AT5G05470 Arabidopsis thaliana HOM05D002891 ORTHO05D003369 8.5e-08 62.4 183 26.2
EL10Ac7g15895 Beta vulgaris HOM05D002891 ORTHO05D003369 8.5e-08 62.4 134 32.1
CDE08G1492 Ceratophyllum demersum HOM05D002891 ORTHO05D003369 8.5e-08 62.4 183 26.2
Duzib068G0352 Durio zibethinus HOM05D002891 ORTHO05D003369 8.5e-08 62.4 159 29.6
Glyma.11G232500 Glycine max HOM05D002891 ORTHO05D003369 8.5e-08 62.4 163 28.8
Glyma.18G024800 Glycine max HOM05D002891 ORTHO05D003369 8.5e-08 62.4 163 28.8
Gorai.006G210400 Gossypium raimondii HOM05D002891 ORTHO05D003369 8.5e-08 62.4 134 32.1
Lj1g0017186 Lotus japonicus HOM05D002891 ORTHO05D003369 8.5e-08 62.4 163 29.4
QL09p038216 Quercus lobata HOM05D002891 ORTHO05D003369 8.5e-08 62.4 163 28.8
Sed0000087 Sechium edule HOM05D002891 ORTHO05D003369 8.5e-08 62.4 134 31.3
arahy.Tifrunner.gnm1.ann1.00PPME Arachis hypogaea HOM05D002891 ORTHO05D003369 1.1e-07 62.0 159 29.6
arahy.Tifrunner.gnm1.ann1.E3R8VW Arachis hypogaea HOM05D002891 ORTHO05D003369 1.1e-07 62.0 159 29.6
A05p06140 Brassica napus HOM05D002891 ORTHO05D003369 1.1e-07 62.0 183 27.3
Carub.0004s2253 Capsella rubella HOM05D002891 ORTHO05D003369 1.1e-07 62.0 183 27.3
AUR62009693 Chenopodium quinoa HOM05D002891 ORTHO05D003369 1.1e-07 62.0 134 31.3
ClCG09G014780 Citrullus lanatus HOM05D002891 ORTHO05D003369 1.1e-07 62.0 159 28.9
MELO3C012667.2 Cucumis melo HOM05D002891 ORTHO05D003369 1.1e-07 62.0 159 28.9
CsaV3_7G022370 Cucumis sativus L. HOM05D002891 ORTHO05D003369 1.1e-07 62.0 159 28.9
Duzib084G0254 Durio zibethinus HOM05D002891 ORTHO05D003369 1.1e-07 62.0 134 31.3
Gohir.A09G193400 Gossypium hirsutum HOM05D002891 ORTHO05D003369 1.1e-07 62.0 134 31.3
Thecc.03G269200 Theobroma cacao HOM05D002891 ORTHO05D003369 1.1e-07 62.0 134 31.3
Thhalv10016882m.g Eutrema salsugineum HOM05D002891 ORTHO05D003369 1.4e-07 61.6 163 29.4
AL4G38080 Arabidopsis lyrata HOM05D002891 ORTHO05D003369 1.9e-07 61.2 163 29.4
AT2G40290 Arabidopsis thaliana HOM05D002891 ORTHO05D003369 1.9e-07 61.2 163 29.4
Carub.0006s0437 Capsella rubella HOM05D002891 ORTHO05D003369 1.9e-07 61.2 183 26.8
CARHR103760 Cardamine hirsuta HOM05D002891 ORTHO05D003369 1.9e-07 61.2 183 27.3
RcHm_v2.0_Chr3g0468371 Rosa chinensis HOM05D002891 ORTHO05D003369 1.9e-07 61.2 171 28.1
TWI09G1197 Tripterygium wilfordii HOM05D002891 ORTHO05D003369 1.9e-07 61.2 163 28.8
BcaB02g09032 Brassica carinata HOM05D002891 ORTHO05D003369 2.5e-07 60.8 183 27.3
CSS0025022 Camellia sinensis var. sinensis HOM05D002891 ORTHO05D003369 2.5e-07 60.8 159 28.9
CSS0048991 Camellia sinensis var. sinensis HOM05D002891 ORTHO05D003369 2.5e-07 60.8 159 28.9
Cfa007477 Carpinus fangiana HOM05D002891 ORTHO05D003369 2.5e-07 60.8 165 28.5
COL.COLO4_33637 Corchorus olitorius HOM05D002891 ORTHO05D003369 2.5e-07 60.8 159 30.2
Haze_14621 Corylus avellana HOM05D002891 ORTHO05D003369 2.5e-07 60.8 165 28.5
Gohir.D09G187600 Gossypium hirsutum HOM05D002891 ORTHO05D003369 2.5e-07 60.8 134 31.3
SMO146G0122 Selaginella moellendorffii HOM05D002891 ORTHO05D003369 2.5e-07 60.8 134 29.1
Rhsim02G0007800 Rhododendron simsii HOM05D002891 ORTHO05D003369 3.2e-07 60.5 160 29.4
Sed0000804 Sechium edule HOM05D002891 ORTHO05D003369 3.2e-07 60.5 159 28.9
Phvul.006G075500 Phaseolus vulgaris HOM05D002891 ORTHO05D003369 5.5e-07 59.7 163 28.2
TWI73G0785 Tripterygium wilfordii HOM05D002891 ORTHO05D003369 5.5e-07 59.7 163 28.8
BcaC02g12145 Brassica carinata HOM05D002891 ORTHO05D003369 7.2e-07 59.3 183 26.8
C04p07080 Brassica napus HOM05D002891 ORTHO05D003369 7.2e-07 59.3 183 26.8
BolC4t22333H Brassica oleracea HOM05D002891 ORTHO05D003369 7.2e-07 59.3 183 26.8
BraA05t19579Z Brassica rapa HOM05D002891 ORTHO05D003369 7.2e-07 59.3 183 26.8
ECA240G1836 Erigeron canadensis HOM05D002891 ORTHO05D003369 7.2e-07 59.3 163 27.6
Manes.15G099100 Manihot esculenta HOM05D002891 ORTHO05D003369 7.2e-07 59.3 134 32.1
Lsat_1_v5_gn_6_95640 Lactuca sativa HOM05D002891 ORTHO05D003369 9.4e-07 58.9 163 27.6
Aqoxy6G00343 Aquilegia oxysepala HOM05D002891 ORTHO05D003369 1.6e-06 58.2 183 24.0
DCAR_030520 Daucus carota HOM05D002891 ORTHO05D003369 1.6e-06 58.2 170 28.2
HanXRQChr03g0089361 Helianthus annuus HOM05D002891 ORTHO05D003369 1.6e-06 58.2 189 25.4
Hma1.2p1_1807F.1_g303360 Hydrangea macrophylla HOM05D002891 ORTHO05D003369 2.1e-06 57.8 134 29.1
Ah.15g096190 Amaranthus hybridus HOM05D002891 ORTHO05D003369 2.7e-06 57.4 134 30.6
MBI04_g14937_MAGBIO Magnolia biondii HOM05D002891 ORTHO05D003369 3.6e-06 57.0 169 27.8


User provided reference genes

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