Gene: Pp3c12_11890
General Information
Structural Information
- Species Physcomitrium patens
- Gene Identifier Pp3c12_11890
- Transcript Identifier Pp3c12_11890V3.2
- Gene Type Coding gene
- Location Chr12 : 7823513-7826182 : negative
Gene Family Information
- ID HOM05D002891
- #Genes/#Species 239/98
- Phylogenetic origin
- ID ORTHO05D003369
- #Genes/#Species 228/98
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- name Pp3c12_11890V3.2
- pacid 32974499
- alias Phypa_199092
- alias Phpat.012G044000
- alias Pp1s352_15V6
- uniprot A0A2K1JQG4
Descriptions
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006413 | IEA | GOA Database | translational initiation | |
| GO:0006412 | IEA | GOA Database | translation |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003729 | ISO | PLAZA Integrative Orthology | mRNA binding | AT2G40290 |
| GO:0043022 | IBA | GOA Database | ribosome binding | |
| GO:0003743 | IBA IEA | GOA Database | translation initiation factor activity | |
| GO:0003743 | IEA | InterPro | translation initiation factor activity | |
| GO:0003723 | IEA | GOA Database | RNA binding | |
| GO:0003723 | IEA | InterPro | RNA binding | |
| GO:0003676 | IEA | GOA Database | nucleic acid binding | |
| GO:0003676 | IEA | InterPro | nucleic acid binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0043614 | IBA | GOA Database | multi-eIF complex | |
| GO:0005829 | ISO | PLAZA Integrative Orthology | cytosol | AT2G40290 |
| GO:0005634 | ISO | PLAZA Integrative Orthology | nucleus | AT2G40290 |
| GO:0005850 | IBA | GOA Database | eukaryotic translation initiation factor 2 complex | |
| GO:0005851 | IBA | GOA Database | eukaryotic translation initiation factor 2B complex | |
| GO:0033290 | IBA | GOA Database | eukaryotic 48S preinitiation complex |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR011488 | Translation initiation factor 2, alpha subunit |
| IPR022967 | RNA-binding domain, S1 |
| IPR044126 | IF2a, S1-like domain |
| IPR024054 | Translation initiation factor 2, alpha subunit, middle domain superfamily |
| IPR024055 | Translation initiation factor 2, alpha subunit, C-terminal |
| IPR012340 | Nucleic acid-binding, OB-fold |
| IPR003029 | S1 domain |
| Mapman id | Description |
|---|---|
| 17.4.1.2.1.1 | Protein biosynthesis.translation initiation.Pre-Initiation Complex (PIC) module.eIF2 Met-tRNA binding factor activity.eIF2 Met-tRNA binding factor complex.component eIF2-alpha |