Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G13430 Arabidopsis lyrata HOM05D004694 ORTHO05D006576 0.0e+00 1162.5 563 100.0
AT5G03860 Arabidopsis thaliana HOM05D004694 ORTHO05D006576 0.0e+00 1148.7 563 98.8
Carub.0006s0280 Capsella rubella HOM05D004694 ORTHO05D006576 0.0e+00 1131.3 563 97.0
Thhalv10015335m.g Eutrema salsugineum HOM05D004694 ORTHO05D006576 0.0e+00 1126.3 563 96.4
Sp6g38870 Schrenkiella parvula HOM05D004694 ORTHO05D006576 0.0e+00 1117.1 563 95.4
BolC2t06123H Brassica oleracea HOM05D004694 ORTHO05D006576 0.0e+00 1115.9 563 95.2
BraA02t04789Z Brassica rapa HOM05D004694 ORTHO05D006576 0.0e+00 1115.9 563 95.4
C02p01580 Brassica napus HOM05D004694 ORTHO05D006576 0.0e+00 1112.4 563 95.4
CARHR209400 Cardamine hirsuta HOM05D004694 ORTHO05D006576 0.0e+00 1108.6 563 95.0
BcaB05g21798 Brassica carinata HOM05D004694 ORTHO05D006576 0.0e+00 1092.8 571 92.8
Aa31LG1G21410 Aethionema arabicum HOM05D004694 ORTHO05D006576 0.0e+00 1088.2 563 92.4
THA.LOC104825008 Tarenaya hassleriana HOM05D004694 ORTHO05D006576 8.5e-302 1039.6 557 89.4
CsaV3_1G009520 Cucumis sativus L. HOM05D004694 ORTHO05D006576 9.4e-293 1009.6 549 86.0
MELO3C002350.2 Cucumis melo HOM05D004694 ORTHO05D006576 1.6e-292 1008.8 549 85.8
ClCG03G003600 Citrullus lanatus HOM05D004694 ORTHO05D006576 2.1e-292 1008.4 560 84.6
FvH4_5g07710 Fragaria vesca HOM05D004694 ORTHO05D006576 1.4e-291 1005.7 550 86.5
arahy.Tifrunner.gnm1.ann1.J1V7G3 Arachis hypogaea HOM05D004694 ORTHO05D006576 1.8e-291 1005.4 549 85.6
FAN04G1296 Fragaria x ananassa HOM05D004694 ORTHO05D006576 3.0e-291 1004.6 550 86.4
FAN08G1582 Fragaria x ananassa HOM05D004694 ORTHO05D006576 3.0e-291 1004.6 550 86.2
Cfa018868 Carpinus fangiana HOM05D004694 ORTHO05D006576 5.2e-291 1003.8 549 85.8
FAN18G1141 Fragaria x ananassa HOM05D004694 ORTHO05D006576 6.7e-291 1003.4 550 86.4
arahy.Tifrunner.gnm1.ann1.C9ULKZ Arachis hypogaea HOM05D004694 ORTHO05D006576 1.2e-290 1002.7 549 85.2
arahy.Tifrunner.gnm1.ann1.18QE6Y Arachis hypogaea HOM05D004694 ORTHO05D006576 2.0e-290 1001.9 549 85.2
arahy.Tifrunner.gnm1.ann1.HVKI9W Arachis hypogaea HOM05D004694 ORTHO05D006576 4.4e-290 1000.7 549 85.4
Eucgr.K02748 Eucalyptus grandis HOM05D004694 ORTHO05D006576 7.5e-290 1000.0 549 85.8
arahy.Tifrunner.gnm1.ann1.EW3HTN Arachis hypogaea HOM05D004694 ORTHO05D006576 4.8e-289 997.3 549 85.1
Medtr8g028225 Medicago truncatula HOM05D004694 ORTHO05D006576 1.8e-288 995.3 552 83.9
Prupe.5G154600 Prunus persica HOM05D004694 ORTHO05D006576 2.4e-288 995.0 553 85.9
Peaxi162Scf00089g00419 Petunia axillaris HOM05D004694 ORTHO05D006576 7.0e-288 993.4 549 84.5
Sed0009275 Sechium edule HOM05D004694 ORTHO05D006576 1.2e-287 992.6 556 83.3
RcHm_v2.0_Chr7g0190721 Rosa chinensis HOM05D004694 ORTHO05D006576 2.0e-287 991.9 551 85.3
CiPaw.11G010700 Carya illinoinensis HOM05D004694 ORTHO05D006576 3.5e-287 991.1 559 83.9
Nitab4.5_0001664g0050 Nicotiana tabacum HOM05D004694 ORTHO05D006576 3.5e-287 991.1 564 82.4
Aqoxy3G01456 Aquilegia oxysepala HOM05D004694 ORTHO05D006576 5.9e-287 990.3 549 84.0
MD06G1147700 Malus domestica HOM05D004694 ORTHO05D006576 1.0e-286 989.6 551 85.7
TPR.G21293 Trifolium pratense HOM05D004694 ORTHO05D006576 1.0e-286 989.6 568 81.9
Thecc.03G124900 Theobroma cacao HOM05D004694 ORTHO05D006576 2.2e-286 988.4 552 84.2
Solyc03g111140.3 Solanum lycopersicum HOM05D004694 ORTHO05D006576 2.9e-286 988.0 549 83.4
CAN.G352.42 Capsicum annuum HOM05D004694 ORTHO05D006576 3.8e-286 987.6 549 83.8
Sopen03g030290 Solanum pennellii HOM05D004694 ORTHO05D006576 1.5e-285 985.7 549 83.6
Lj4g0028142 Lotus japonicus HOM05D004694 ORTHO05D006576 4.2e-285 984.2 549 83.6
Rhsim12G0172800 Rhododendron simsii HOM05D004694 ORTHO05D006576 4.2e-285 984.2 549 83.6
TAR622G1078 Trochodendron aralioides HOM05D004694 ORTHO05D006576 4.2e-285 984.2 549 83.6
HanXRQChr05g0154041 Helianthus annuus HOM05D004694 ORTHO05D006576 5.5e-285 983.8 552 83.9
Lsat_1_v5_gn_5_13501 Lactuca sativa HOM05D004694 ORTHO05D006576 7.2e-285 983.4 549 83.6
Lalb_Chr07g0183271 Lupinus albus HOM05D004694 ORTHO05D006576 7.2e-285 983.4 549 83.4
Nitab4.5_0003680g0030 Nicotiana tabacum HOM05D004694 ORTHO05D006576 7.2e-285 983.4 549 83.8
Sopen03g030280 Solanum pennellii HOM05D004694 ORTHO05D006576 1.0e-283 979.5 549 83.1
Glyma.17G128000 Glycine max HOM05D004694 ORTHO05D006576 1.4e-283 979.2 549 82.7
DCAR_016413 Daucus carota HOM05D004694 ORTHO05D006576 1.8e-283 978.8 551 83.3
Atru.chr9.1027_Atru.chr9.1028 Acer truncatum HOM05D004694 ORTHO05D006576 2.3e-283 978.4 564 82.3
CANSAT11G0344 Cannabis sativa HOM05D004694 ORTHO05D006576 2.3e-283 978.4 553 83.4
Solyc03g111130.1 Solanum lycopersicum HOM05D004694 ORTHO05D006576 3.0e-283 978.0 549 82.9
ECA246G0215 Erigeron canadensis HOM05D004694 ORTHO05D006576 6.8e-283 976.9 549 82.7
Potri.015G092000 Populus trichocarpa HOM05D004694 ORTHO05D006576 6.8e-283 976.9 546 83.7
TWI39G0550 Tripterygium wilfordii HOM05D004694 ORTHO05D006576 1.2e-282 976.1 552 83.0
PGSC0003DMG400015192 Solanum tuberosum HOM05D004694 ORTHO05D006576 2.0e-282 975.3 549 82.9
VMungo1215G0651 Vigna mungo HOM05D004694 ORTHO05D006576 9.8e-282 973.0 553 81.9
Ciclev10019499m.g Citrus clementina HOM05D004694 ORTHO05D006576 3.7e-281 971.1 551 83.3
Migut.I00493 Erythranthe guttata HOM05D004694 ORTHO05D006576 1.1e-280 969.5 552 81.7
Hma1.2p1_0014F.1_g009775 Hydrangea macrophylla HOM05D004694 ORTHO05D006576 1.6e-279 965.7 544 83.5
Duzib205G1411 Durio zibethinus HOM05D004694 ORTHO05D006576 3.5e-279 964.5 552 81.7
PGR044G1202 Punica granatum HOM05D004694 ORTHO05D006576 3.5e-279 964.5 547 83.0
SalBow5G3571 Salvia bowleyana HOM05D004694 ORTHO05D006576 3.5e-279 964.5 555 81.8
Dinv04852 Davidia involucrata HOM05D004694 ORTHO05D006576 4.5e-279 964.1 551 82.8
vmacro16662 Vaccinium macrocarpon HOM05D004694 ORTHO05D006576 7.7e-279 963.4 573 79.8
arahy.Tifrunner.gnm1.ann1.U91AM5 Arachis hypogaea HOM05D004694 ORTHO05D006576 1.7e-278 962.2 552 82.2
CSS0001791 Camellia sinensis var. sinensis HOM05D004694 ORTHO05D006576 2.3e-278 961.8 549 82.0
Lj5C97G9 Lonicera japonica HOM05D004694 ORTHO05D006576 3.8e-278 961.1 579 78.4
Gorai.001G060900 Gossypium raimondii HOM05D004694 ORTHO05D006576 6.5e-278 960.3 545 82.6
Gohir.A07G053000 Gossypium hirsutum HOM05D004694 ORTHO05D006576 8.6e-278 959.9 545 82.6
Sabra15G0113800 Salix brachista HOM05D004694 ORTHO05D006576 1.9e-277 958.7 546 82.2
Gohir.D07G057400 Gossypium hirsutum HOM05D004694 ORTHO05D006576 5.5e-277 957.2 545 82.4
PSO017G1181 Papaver somniferum HOM05D004694 ORTHO05D006576 5.2e-275 950.7 549 80.7
PSO478G2802 Papaver somniferum HOM05D004694 ORTHO05D006576 5.2e-275 950.7 549 80.7
EL10As4g23460 Beta vulgaris HOM05D004694 ORTHO05D006576 2.0e-274 948.7 549 80.0
AUR62029660 Chenopodium quinoa HOM05D004694 ORTHO05D006576 4.4e-274 947.6 542 81.4
Nn4g22401 Nelumbo nucifera HOM05D004694 ORTHO05D006576 7.5e-274 946.8 550 80.5
AUR62025866 Chenopodium quinoa HOM05D004694 ORTHO05D006576 9.8e-274 946.4 548 79.9
PGSC0003DMG400015194 Solanum tuberosum HOM05D004694 ORTHO05D006576 3.7e-273 944.5 549 80.0
Glyma.05G045900 Glycine max HOM05D004694 ORTHO05D006576 9.2e-272 939.9 546 79.9
VMungo1215G1303 Vigna mungo HOM05D004694 ORTHO05D006576 9.2e-272 939.9 546 80.8
Sc14g0007560 Simmondsia chinensis HOM05D004694 ORTHO05D006576 1.2e-271 939.5 549 80.0
Sopen03g030270 Solanum pennellii HOM05D004694 ORTHO05D006576 7.8e-271 936.8 549 79.6
CAN.G352.43 Capsicum annuum HOM05D004694 ORTHO05D006576 1.1e-269 932.9 569 77.0
Phvul.003G209200 Phaseolus vulgaris HOM05D004694 ORTHO05D006576 2.5e-269 931.8 541 80.8
Cpa.g.sc4.107 Carica papaya HOM05D004694 ORTHO05D006576 3.3e-269 931.4 569 77.7
SGA_v2.0_scaffold80G25701 Striga asiatica HOM05D004694 ORTHO05D006576 4.3e-269 931.0 543 81.4
Glyma.17G128100 Glycine max HOM05D004694 ORTHO05D006576 7.3e-269 930.2 545 79.3
unitig_21.g20324 Utricularia gibba HOM05D004694 ORTHO05D006576 1.8e-267 925.6 546 79.9
Oeu044618.1 Olea europaea HOM05D004694 ORTHO05D006576 8.9e-267 923.3 517 83.9
QL10p004544 Quercus lobata HOM05D004694 ORTHO05D006576 1.2e-266 922.9 499 87.4
FAN13G0009 Fragaria x ananassa HOM05D004694 ORTHO05D006576 3.7e-265 917.9 554 79.6
CDE09G0730 Ceratophyllum demersum HOM05D004694 ORTHO05D006576 2.4e-264 915.2 549 78.9
Ah.11g044960 Amaranthus hybridus HOM05D004694 ORTHO05D006576 3.3e-261 904.8 545 77.4
Haze_07250 Corylus avellana HOM05D004694 ORTHO05D006576 2.0e-258 895.6 549 78.7
Ca_23552_v3 Cicer arietinum L. HOM05D004694 ORTHO05D006576 2.4e-256 888.6 552 77.4
Zm00001eb079170 Zea mays HOM05D004694 ORTHO05D006576 5.0e-254 880.9 543 76.8
Actinidia08860 Actinidia chinensis HOM05D004694 ORTHO05D006576 4.7e-252 874.4 555 76.2
HPP92_023361 Vanilla planifolia HOM05D004694 ORTHO05D006576 5.2e-251 870.9 542 76.2
ATR0824G173 Amborella trichopoda HOM05D004694 ORTHO05D006576 9.9e-250 866.7 545 75.2
SalBow1G3673 Salvia bowleyana HOM05D004694 ORTHO05D006576 1.7e-249 865.9 546 75.1
SalBow1G5430 Salvia bowleyana HOM05D004694 ORTHO05D006576 2.2e-249 865.5 546 75.1
MSTRG.9318 Avicennia marina HOM05D004694 ORTHO05D006576 4.9e-249 864.4 497 80.1
Cc04_g10080 Coffea canephora HOM05D004694 ORTHO05D006576 6.4e-249 864.0 549 75.4
Os04g0486950 Oryza sativa ssp. japonica HOM05D004694 ORTHO05D006576 3.6e-244 848.2 559 72.8
SEGI_27575 Sequoiadendron giganteum HOM05D004694 ORTHO05D006576 2.2e-241 839.0 550 72.9
MBI11_g05409_MAGBIO Magnolia biondii HOM05D004694 ORTHO05D006576 3.0e-238 828.6 562 73.1
GSVIVG01008494001 Vitis vinifera HOM05D004694 ORTHO05D006576 2.4e-235 818.9 544 73.5
Dinv11097 Davidia involucrata HOM05D004694 ORTHO05D006576 3.8e-233 811.6 455 85.3
CDE08G1017 Ceratophyllum demersum HOM05D004694 ORTHO05D006576 1.6e-231 806.2 503 76.5
SMO367G0555 Selaginella moellendorffii HOM05D004694 ORTHO05D006576 2.4e-227 792.3 549 69.0
COL.COLO4_28061 Corchorus olitorius HOM05D004694 ORTHO05D006576 1.5e-226 789.6 552 70.7
Pp3c20_22510 Physcomitrium patens HOM05D004694 ORTHO05D006576 4.6e-223 778.1 541 68.8
QL10p004639 Quercus lobata HOM05D004694 ORTHO05D006576 2.3e-222 775.8 423 87.0
Mapoly0154s0035 Marchantia polymorpha HOM05D004694 ORTHO05D006576 3.9e-222 775.0 539 67.3
Manes.14G054100 Manihot esculenta HOM05D004694 ORTHO05D006576 1.9e-221 772.7 424 86.3
AagrBONN_evm.TU.Sc2ySwM_117.2387 Anthoceros agrestis HOM05D004694 ORTHO05D006576 3.3e-213 745.3 543 66.7
CBR_g26132 Chara braunii HOM05D004694 ORTHO05D006576 4.5e-210 734.9 547 65.4
AagrBONN_evm.TU.Sc2ySwM_228.3843 Anthoceros agrestis HOM05D004694 ORTHO05D006576 1.2e-207 726.9 546 65.0
SalBow1G1465 Salvia bowleyana HOM05D004694 ORTHO05D006576 4.2e-200 701.8 531 64.8
SalBow1G5822 Salvia bowleyana HOM05D004694 ORTHO05D006576 4.2e-200 701.8 531 64.8
TAR374G0737 Trochodendron aralioides HOM05D004694 ORTHO05D002940 3.1e-195 685.6 609 60.3
Psat4g158240 Pisum sativum HOM05D004694 ORTHO05D006576 1.5e-165 587.0 330 84.2
Phvul.003G209101 Phaseolus vulgaris HOM05D004694 ORTHO05D006576 1.4e-163 580.5 334 81.4
Actinidia36796 Actinidia chinensis HOM05D004694 ORTHO05D006576 4.9e-156 555.4 555 55.5
arahy.Tifrunner.gnm1.ann1.SX4PQT Arachis hypogaea HOM05D004694 ORTHO05D006576 2.0e-146 523.5 292 84.6
Cre03.g144807 Chlamydomonas reinhardtii HOM05D004694 ORTHO05D006576 5.0e-145 518.8 546 49.8
Ca_23555_v3 Cicer arietinum L. HOM05D004694 ORTHO05D006576 7.1e-131 471.9 261 83.1
HPP92_023371 Vanilla planifolia HOM05D004694 ORTHO05D006576 3.5e-130 469.5 302 75.5
Hund10205 Selenicereus undatus HOM05D004694 ORTHO05D006576 6.0e-122 442.2 350 64.9
Potri.012G094532 Populus trichocarpa HOM05D004694 ORTHO05D006576 1.0e-100 371.7 199 87.4
BcaB01g05780 Brassica carinata HOM05D004694 ORTHO05D006576 1.1e-88 331.6 200 80.0
SalBow1G0618 Salvia bowleyana HOM05D004694 ORTHO05D006576 3.4e-85 320.1 501 41.1
AagrBONN_evm.TU.Sc2ySwM_344.4962 Anthoceros agrestis HOM05D004694 ORTHO05D006576 1.1e-70 271.9 335 44.8
BcaC08g44622 Brassica carinata HOM05D004694 ORTHO05D016782 7.7e-61 239.2 129 89.9
BraA09t39454Z Brassica rapa HOM05D002984 ORTHO05D003561 5.5e-59 233.0 137 83.9
PGSC0003DMG402015193 Solanum tuberosum HOM05D004694 ORTHO05D016782 7.2e-59 232.6 133 82.7
Duzib068G0556 Durio zibethinus HOM05D004694 ORTHO05D006576 1.8e-57 228.0 139 77.7
A03p11210 Brassica napus HOM05D004694 ORTHO05D016782 2.0e-56 224.6 127 86.6
C06p36560 Brassica napus HOM05D004694 ORTHO05D016782 2.0e-56 224.6 127 86.6
C06p20980 Brassica napus HOM05D004694 ORTHO05D016782 1.1e-54 218.8 120 87.5
BolC6t37284H Brassica oleracea HOM05D004694 ORTHO05D016782 1.1e-54 218.8 120 87.5
A09p39550 Brassica napus HOM05D004694 ORTHO05D016782 1.1e-51 208.8 119 85.7
BraA01t01659Z Brassica rapa HOM05D004694 ORTHO05D016782 1.1e-51 208.8 119 85.7
VMungo1383G1618 Vigna mungo HOM05D004694 ORTHO05D046692 1.2e-48 198.7 109 78.9
arahy.Tifrunner.gnm1.ann1.0V01Q6 Arachis hypogaea HOM05D004694 ORTHO05D006576 3.7e-47 193.7 111 76.6
Ca_29801_v3 Cicer arietinum L. HOM05D004694 ORTHO05D006576 1.6e-45 188.3 114 73.7
SalBow1G0228 Salvia bowleyana HOM05D004694 ORTHO05D006576 1.5e-43 181.8 119 71.4
Glyma.05G045851 Glycine max HOM05D004694 ORTHO05D046692 5.2e-41 173.3 95 81.1
PGSC0003DMG401015193 Solanum tuberosum HOM05D004694 ORTHO05D006576 1.5e-35 155.2 76 90.8
Ca_03499_v3 Cicer arietinum L. HOM05D004694 ORTHO05D016782 1.7e-31 141.7 79 83.5
MD14G1161700 Malus domestica HOM05D004694 ORTHO05D248771 5.8e-24 116.7 189 41.3
SalBow1G3079 Salvia bowleyana HOM05D004694 ORTHO05D006576 7.5e-24 116.3 86 62.8
Ca_28596_v3 Cicer arietinum L. HOM05D004694 ORTHO05D148954 9.8e-24 115.9 118 48.3
AUR62040389 Chenopodium quinoa HOM05D003382 ORTHO05D003930 4.9e-23 113.6 121 47.9
Glyma.19G088650 Glycine max HOM05D004694 ORTHO05D213888 1.3e-20 105.5 62 74.2
MD14G1161800 Malus domestica HOM05D004694 ORTHO05D016782 1.1e-14 85.9 63 68.3


User provided reference genes

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