Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G12940 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 1.1e-90 336.7 168 100.0
Sp6g39510 Schrenkiella parvula HOM05D004349 ORTHO05D005097 5.8e-89 330.9 167 98.8
AL6G12510 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 1.3e-88 329.7 167 98.2
Thhalv10021663m.g Eutrema salsugineum HOM05D004349 ORTHO05D005097 2.9e-88 328.6 167 97.6
AT5G03220 Arabidopsis thaliana HOM05D004349 ORTHO05D005097 8.4e-88 327.0 167 97.0
Carub.0006s0201 Capsella rubella HOM05D004349 ORTHO05D005097 1.4e-87 326.2 167 97.6
Thhalv10014853m.g Eutrema salsugineum HOM05D004349 ORTHO05D005097 1.4e-87 326.2 167 97.6
AT5G03500 Arabidopsis thaliana HOM05D004349 ORTHO05D005097 2.7e-86 322.0 167 96.4
Aa31LG1G21860 Aethionema arabicum HOM05D004349 ORTHO05D005097 4.6e-86 321.2 167 94.6
CARHR210130 Cardamine hirsuta HOM05D004349 ORTHO05D005097 1.7e-85 319.3 167 95.2
CARHR040500 Cardamine hirsuta HOM05D004349 ORTHO05D005097 1.5e-84 316.2 167 92.8
BcaC03g13019 Brassica carinata HOM05D004349 ORTHO05D005097 5.6e-84 314.3 167 95.2
BolC2t06089H Brassica oleracea HOM05D004349 ORTHO05D005097 1.3e-83 313.2 167 94.6
THA.LOC104821832 Tarenaya hassleriana HOM05D004349 ORTHO05D005097 3.8e-80 301.6 167 89.8
COL.COLO4_29437 Corchorus olitorius HOM05D004349 ORTHO05D005097 2.1e-78 295.8 168 86.9
CiPaw.09G026100 Carya illinoinensis HOM05D004349 ORTHO05D005097 1.0e-77 293.5 167 85.0
BraA02t04750Z Brassica rapa HOM05D004349 ORTHO05D005097 2.3e-77 292.4 150 96.0
QL11p005722 Quercus lobata HOM05D004349 ORTHO05D005097 3.9e-77 291.6 167 85.0
Atru.chr8.1222 Acer truncatum HOM05D004349 ORTHO05D005097 5.1e-77 291.2 167 85.6
TWI74G1533 Tripterygium wilfordii HOM05D004349 ORTHO05D005097 6.7e-77 290.8 167 86.2
Haze_20078 Corylus avellana HOM05D004349 ORTHO05D005097 1.1e-76 290.0 167 84.4
Sed0001935 Sechium edule HOM05D004349 ORTHO05D005097 1.5e-76 289.7 167 84.4
Duzib093G0127 Durio zibethinus HOM05D004349 ORTHO05D005097 2.5e-76 288.9 167 84.4
Cfa020113 Carpinus fangiana HOM05D004349 ORTHO05D005097 3.3e-76 288.5 167 83.8
Dinv25025 Davidia involucrata HOM05D004349 ORTHO05D005097 3.3e-76 288.5 166 85.5
Gohir.D11G331900 Gossypium hirsutum HOM05D004349 ORTHO05D005097 3.3e-76 288.5 167 83.8
Gorai.007G362800 Gossypium raimondii HOM05D004349 ORTHO05D005097 3.3e-76 288.5 167 83.8
Ciclev10012936m.g Citrus clementina HOM05D004349 ORTHO05D005097 4.3e-76 288.1 167 83.8
Sed0019694 Sechium edule HOM05D004349 ORTHO05D005097 4.3e-76 288.1 167 84.4
Prupe.7G086000 Prunus persica HOM05D004349 ORTHO05D005097 1.3e-75 286.6 166 82.5
QL05p072253 Quercus lobata HOM05D004349 ORTHO05D005097 1.3e-75 286.6 167 83.2
GSVIVG01033427001 Vitis vinifera HOM05D004349 ORTHO05D005097 1.6e-75 286.2 167 85.0
arahy.Tifrunner.gnm1.ann1.FMT65J Arachis hypogaea HOM05D004349 ORTHO05D005097 4.8e-75 284.6 166 82.5
EL10Ac2g02766 Beta vulgaris HOM05D004349 ORTHO05D005097 4.8e-75 284.6 168 81.0
MELO3C009592.2 Cucumis melo HOM05D004349 ORTHO05D005097 4.8e-75 284.6 167 82.6
LjContig00564g0000037 Lotus japonicus HOM05D004349 ORTHO05D005097 4.8e-75 284.6 167 82.6
Cpa.g.sc85.16 Carica papaya HOM05D004349 ORTHO05D005097 6.2e-75 284.3 166 85.5
Actinidia01590 Actinidia chinensis HOM05D004349 ORTHO05D005097 8.1e-75 283.9 166 83.7
arahy.Tifrunner.gnm1.ann1.9IE653 Arachis hypogaea HOM05D004349 ORTHO05D005097 1.8e-74 282.7 166 81.3
ClCG10G017820 Citrullus lanatus HOM05D004349 ORTHO05D005097 1.8e-74 282.7 167 81.4
Potri.016G062800 Populus trichocarpa HOM05D004349 ORTHO05D005097 1.8e-74 282.7 167 83.8
Ca_01401_v3 Cicer arietinum L. HOM05D004349 ORTHO05D005097 2.4e-74 282.3 167 79.6
Manes.08G039900 Manihot esculenta HOM05D004349 ORTHO05D005097 2.4e-74 282.3 167 83.2
Phvul.010G156700 Phaseolus vulgaris HOM05D004349 ORTHO05D005097 2.4e-74 282.3 167 81.4
Glyma.07G029300 Glycine max HOM05D004349 ORTHO05D005097 3.1e-74 282.0 167 80.8
Nitab4.5_0001874g0080 Nicotiana tabacum HOM05D004349 ORTHO05D005097 3.1e-74 282.0 167 82.0
Solyc04g081430.3 Solanum lycopersicum HOM05D004349 ORTHO05D005097 3.1e-74 282.0 167 82.6
Sopen04g035040 Solanum pennellii HOM05D004349 ORTHO05D005097 3.1e-74 282.0 167 82.6
Aqoxy1G00443 Aquilegia oxysepala HOM05D004349 ORTHO05D005097 5.3e-74 281.2 166 82.5
Glyma.08G213500 Glycine max HOM05D004349 ORTHO05D005097 5.3e-74 281.2 167 80.2
Peaxi162Scf00463g00127 Petunia axillaris HOM05D004349 ORTHO05D005097 6.9e-74 280.8 167 82.0
Psat5g280400 Pisum sativum HOM05D004349 ORTHO05D005097 6.9e-74 280.8 167 79.6
FvH4_6g21430 Fragaria vesca HOM05D004349 ORTHO05D005097 9.0e-74 280.4 166 81.3
FAN05G0412 Fragaria x ananassa HOM05D004349 ORTHO05D005097 9.0e-74 280.4 166 81.3
FAN05G3233 Fragaria x ananassa HOM05D004349 ORTHO05D005097 9.0e-74 280.4 166 81.3
RcHm_v2.0_Chr4g0406251 Rosa chinensis HOM05D004349 ORTHO05D005097 9.0e-74 280.4 166 81.3
BraA10t45308Z Brassica rapa HOM05D004349 ORTHO05D005097 1.2e-73 280.0 149 93.3
TPR.G11586 Trifolium pratense HOM05D004349 ORTHO05D005097 1.2e-73 280.0 167 79.6
FAN02G1450 Fragaria x ananassa HOM05D004349 ORTHO05D005097 1.5e-73 279.6 166 81.3
Medtr6g471120 Medicago truncatula HOM05D004349 ORTHO05D005097 1.5e-73 279.6 167 79.6
TWI77G0543 Tripterygium wilfordii HOM05D004349 ORTHO05D005097 1.5e-73 279.6 167 83.2
Ah.13g075520 Amaranthus hybridus HOM05D004349 ORTHO05D005097 2.6e-73 278.9 167 79.0
Cc09_g02100 Coffea canephora HOM05D004349 ORTHO05D005097 2.6e-73 278.9 167 82.0
Rhsim04G0092200 Rhododendron simsii HOM05D004349 ORTHO05D005097 3.4e-73 278.5 166 81.9
Rhsim04G0092400 Rhododendron simsii HOM05D004349 ORTHO05D005097 3.4e-73 278.5 166 81.9
CsaV3_7G005510 Cucumis sativus L. HOM05D004349 ORTHO05D005097 4.5e-73 278.1 167 82.0
Medtr2g094720 Medicago truncatula HOM05D004349 ORTHO05D005097 4.5e-73 278.1 167 79.0
Hma1.2p1_0516F.1_g170550 Hydrangea macrophylla HOM05D004349 ORTHO05D005097 1.7e-72 276.2 166 81.3
Carub.0006s2456 Capsella rubella HOM05D004349 ORTHO05D005097 2.9e-72 275.4 168 87.5
MD14G1049500 Malus domestica HOM05D004349 ORTHO05D005097 2.9e-72 275.4 166 79.5
ECA240G0294 Erigeron canadensis HOM05D004349 ORTHO05D005097 4.9e-72 274.6 167 80.8
Migut.L01584 Erythranthe guttata HOM05D004349 ORTHO05D005097 4.9e-72 274.6 167 79.0
MSTRG.10496 Avicennia marina HOM05D004349 ORTHO05D005097 8.4e-72 273.9 167 80.2
BcaNung06685 Brassica carinata HOM05D004349 ORTHO05D005097 8.4e-72 273.9 152 90.8
TPR.G23269 Trifolium pratense HOM05D004349 ORTHO05D005097 8.4e-72 273.9 167 79.6
PSO528G0119 Papaver somniferum HOM05D004349 ORTHO05D005097 1.9e-71 272.7 167 79.0
MD12G1050700 Malus domestica HOM05D004349 ORTHO05D005097 3.2e-71 271.9 166 78.9
CANSAT54G2032 Cannabis sativa HOM05D004349 ORTHO05D005097 4.2e-71 271.6 161 82.0
PSO170G4263 Papaver somniferum HOM05D004349 ORTHO05D005097 9.3e-71 270.4 167 78.4
Nitab4.5_0000571g0040 Nicotiana tabacum HOM05D004349 ORTHO05D005097 2.7e-70 268.9 190 72.1
PGSC0003DMG401009863 Solanum tuberosum HOM05D004349 ORTHO05D005097 3.5e-70 268.5 184 74.5
FAN09G4703 Fragaria x ananassa HOM05D004349 ORTHO05D005097 4.6e-70 268.1 183 73.2
arahy.Tifrunner.gnm1.ann1.2RRL5Q Arachis hypogaea HOM05D004349 ORTHO05D005097 6.0e-70 267.7 194 69.6
A10p32710 Brassica napus HOM05D004349 ORTHO05D005097 6.0e-70 267.7 149 89.3
FAN14G0676 Fragaria x ananassa HOM05D004349 ORTHO05D005097 6.0e-70 267.7 183 73.2
FAN14G3215 Fragaria x ananassa HOM05D004349 ORTHO05D005097 6.0e-70 267.7 183 73.2
Lalb_Chr23g0277751 Lupinus albus HOM05D004349 ORTHO05D005097 6.0e-70 267.7 167 76.0
DCAR_018883 Daucus carota HOM05D004349 ORTHO05D005097 1.8e-69 266.2 180 73.3
SGA_v2.0_scaffold21G09532 Striga asiatica HOM05D004349 ORTHO05D005097 1.8e-69 266.2 167 77.8
SHI30021 Sapria himalayana HOM05D004349 ORTHO05D005097 2.3e-69 265.8 167 77.8
C02p00910 Brassica napus HOM05D004349 ORTHO05D005097 3.0e-69 265.4 160 85.0
Thecc.05G180500 Theobroma cacao HOM05D004349 ORTHO05D005097 3.9e-69 265.0 149 86.6
ECA248G3305 Erigeron canadensis HOM05D004349 ORTHO05D005097 5.1e-69 264.6 167 77.8
TAR623G1044 Trochodendron aralioides HOM05D004349 ORTHO05D005097 8.7e-69 263.8 167 80.2
BolC9t60086H Brassica oleracea HOM05D004349 ORTHO05D005097 1.1e-68 263.5 168 82.1
Eucgr.A02508 Eucalyptus grandis HOM05D004349 ORTHO05D005097 1.5e-68 263.1 149 85.2
Lalb_Chr19g0125421 Lupinus albus HOM05D004349 ORTHO05D005097 3.3e-68 261.9 167 73.1
Sabra06G0151800 Salix brachista HOM05D004349 ORTHO05D005097 3.3e-68 261.9 150 85.3
Nn2g15821 Nelumbo nucifera HOM05D004349 ORTHO05D005097 4.3e-68 261.5 165 78.8
AL3G38450 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 1.3e-67 260.0 133 99.2
VMungo0331G0313 Vigna mungo HOM05D004349 ORTHO05D005097 2.8e-67 258.8 148 83.8
Lj2C360G6 Lonicera japonica HOM05D004349 ORTHO05D005097 1.1e-66 256.9 149 83.2
Hund26707 Selenicereus undatus HOM05D004349 ORTHO05D005097 1.1e-66 256.9 205 64.4
TAR623G0936 Trochodendron aralioides HOM05D004349 ORTHO05D005097 1.8e-66 256.1 149 83.2
AUR62015286 Chenopodium quinoa HOM05D004349 ORTHO05D005097 5.3e-66 254.6 149 79.9
Gohir.A11G314900 Gossypium hirsutum HOM05D004349 ORTHO05D005097 5.3e-66 254.6 143 85.3
Rhsim10G0130900 Rhododendron simsii HOM05D004349 ORTHO05D005097 5.3e-66 254.6 212 64.2
SEGI_10501 Sequoiadendron giganteum HOM05D004349 ORTHO05D005097 6.9e-66 254.2 167 70.7
unitig_37.g12649 Utricularia gibba HOM05D006346 ORTHO05D007910 2.6e-65 252.3 167 74.3
HPP92_013495 Vanilla planifolia HOM05D004349 ORTHO05D005097 1.3e-64 250.0 156 79.5
HPP92_026048 Vanilla planifolia HOM05D004349 ORTHO05D005097 3.8e-64 248.4 156 79.5
Lsat_1_v5_gn_1_58740 Lactuca sativa HOM05D004349 ORTHO05D005097 6.5e-64 247.7 145 82.1
MBI18_g03872_MAGBIO Magnolia biondii HOM05D004349 ORTHO05D005097 8.4e-64 247.3 166 73.5
ATR0580G353 Amborella trichopoda HOM05D004349 ORTHO05D005097 2.5e-63 245.7 147 81.0
Mapoly0052s0099 Marchantia polymorpha HOM05D004349 ORTHO05D005097 7.2e-63 244.2 167 69.5
CSS0044984 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 1.6e-62 243.0 151 79.5
CDE02G3593 Ceratophyllum demersum HOM05D000001 ORTHO05D000424 3.5e-62 241.9 153 75.8
Os04g0661800 Oryza sativa ssp. japonica HOM05D004349 ORTHO05D005097 3.5e-62 241.9 168 70.8
Prupe.6G266300 Prunus persica HOM05D004349 ORTHO05D005097 1.8e-61 239.6 177 70.6
vmacro17893 Vaccinium macrocarpon HOM05D004349 ORTHO05D005097 5.7e-60 234.6 237 55.3
C09p73550 Brassica napus HOM05D004349 ORTHO05D005097 7.4e-60 234.2 148 84.5
Zm00001eb067450 Zea mays HOM05D004349 ORTHO05D005097 3.7e-59 231.9 168 66.7
PGR004G2245 Punica granatum HOM05D004349 ORTHO05D005097 1.5e-57 226.5 126 84.1
Prupe.1G181600 Prunus persica HOM05D004349 ORTHO05D005097 1.7e-56 223.0 156 73.1
Zm00001eb432780 Zea mays HOM05D004349 ORTHO05D005097 4.2e-55 218.4 167 64.7
CAN.G311.28 Capsicum annuum HOM05D004349 ORTHO05D005097 7.2e-55 217.6 124 83.1
arahy.Tifrunner.gnm1.ann1.UX8DIM Arachis hypogaea HOM05D004349 ORTHO05D005097 3.6e-54 215.3 166 68.7
CBR_g46752 Chara braunii HOM05D004349 ORTHO05D005097 2.8e-51 205.7 191 56.5
Sc13g0002530 Simmondsia chinensis HOM05D004349 ORTHO05D005097 2.8e-51 205.7 123 76.4
HanXRQChr01g0024771 Helianthus annuus HOM05D004349 ORTHO05D005097 8.2e-51 204.1 122 84.4
Prupe.8G249100 Prunus persica HOM05D004349 ORTHO05D005097 9.1e-50 200.7 166 64.5
HanXRQChr03g0090511 Helianthus annuus HOM05D004349 ORTHO05D005097 3.4e-49 198.7 122 81.1
Prupe.1G547000 Prunus persica HOM05D004349 ORTHO05D005097 2.2e-48 196.1 121 80.2
Prupe.1G300700 Prunus persica HOM05D004349 ORTHO05D005097 2.9e-48 195.7 121 79.3
Prupe.7G024200 Prunus persica HOM05D004349 ORTHO05D005097 2.9e-48 195.7 121 79.3
SMO340G0091 Selaginella moellendorffii HOM05D004349 ORTHO05D005097 2.9e-48 195.7 155 61.3
Prupe.3G021700 Prunus persica HOM05D004349 ORTHO05D005097 6.5e-48 194.5 121 78.5
Prupe.1G035300 Prunus persica HOM05D004349 ORTHO05D005097 3.2e-47 192.2 123 77.2
Dinv24030 Davidia involucrata HOM05D004349 ORTHO05D005097 1.6e-46 189.9 122 79.5
ATR0564G039 Amborella trichopoda HOM05D004349 ORTHO05D005097 5.1e-45 184.9 145 69.7
CSS0033717 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 1.5e-44 183.3 141 67.4
SMO358G0681 Selaginella moellendorffii HOM05D004349 ORTHO05D005097 3.1e-42 175.6 134 61.9
RcHm_v2.0_Chr3g0478001 Rosa chinensis HOM05D004349 ORTHO05D005097 2.1e-38 162.9 106 77.4
Oeu057599.1 Olea europaea HOM05D004349 ORTHO05D005097 8.0e-38 161.0 90 82.2
Prupe.2G085900 Prunus persica HOM05D004349 ORTHO05D005097 5.7e-36 154.8 90 82.2
FAN05G0350 Fragaria x ananassa HOM05D004349 ORTHO05D005097 1.7e-35 153.3 94 83.0
Sabra16G0064800 Salix brachista HOM05D004349 ORTHO05D005097 4.2e-31 138.7 83 83.1
CARHR099790 Cardamine hirsuta HOM05D004349 ORTHO05D005097 2.7e-30 136.0 82 84.1
AL6G12900 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 1.2e-28 130.6 78 80.8
Pp3c5_20850 Physcomitrium patens HOM05D004349 ORTHO05D005097 2.6e-28 129.4 112 58.9
AagrBONN_evm.TU.Sc2ySwM_117.2767 Anthoceros agrestis HOM05D004349 ORTHO05D005097 5.4e-26 121.7 87 65.5
CARHR251030 Cardamine hirsuta HOM05D004349 ORTHO05D005097 7.0e-26 121.3 74 82.4
AagrBONN_evm.TU.Sc2ySwM_362.1623 Anthoceros agrestis HOM05D004349 ORTHO05D005097 5.9e-25 118.2 93 60.2
Rhsim04G0093300 Rhododendron simsii HOM05D004349 ORTHO05D005097 5.9e-25 118.2 73 82.2
CARHR218030 Cardamine hirsuta HOM05D004349 ORTHO05D005097 2.1e-22 109.8 64 85.9
CSS0042444 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 2.7e-22 109.4 75 73.3
RcHm_v2.0_Chr3g0478061 Rosa chinensis HOM05D004349 ORTHO05D005097 2.7e-22 109.4 102 57.8
CARHR258920 Cardamine hirsuta HOM05D004349 ORTHO05D005097 3.4e-20 102.4 65 83.1
PRCOL_00002553 Prasinoderma coloniale HOM05D004349 ORTHO05D005097 3.7e-19 99.0 137 39.4
MCO10G402 Micromonas commoda HOM05D004349 ORTHO05D005097 4.5e-17 92.0 156 36.5
Rhsim04G0093100 Rhododendron simsii HOM05D004349 ORTHO05D005097 6.1e-14 81.6 44 81.8
RcHm_v2.0_Chr3g0478621 Rosa chinensis HOM05D004349 ORTHO05D005097 1.0e-13 80.9 108 50.0
RcHm_v2.0_Chr3g0478211 Rosa chinensis HOM05D004349 ORTHO05D005097 4.0e-13 79.0 49 79.6
RcHm_v2.0_Chr3g0478341 Rosa chinensis HOM05D004349 ORTHO05D005097 4.0e-13 79.0 49 79.6
Cre01.g062902 Chlamydomonas reinhardtii HOM05D004349 ORTHO05D005097 3.7e-11 72.4 166 30.7
FAN04G2473 Fragaria x ananassa HOM05D004349 ORTHO05D005097 2.3e-08 63.2 38 71.1


User provided reference genes

Program Settings