Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G12120 Arabidopsis lyrata HOM05D004552 ORTHO05D005501 4.2e-192 674.9 429 100.0
AT5G02850 Arabidopsis thaliana HOM05D004552 ORTHO05D005501 3.0e-182 642.1 429 95.6
Carub.0006s0165 Capsella rubella HOM05D004552 ORTHO05D005501 7.7e-170 600.9 433 91.0
Sp6g39730 Schrenkiella parvula HOM05D004552 ORTHO05D005501 1.2e-167 593.6 416 90.6
CARHR210480 Cardamine hirsuta HOM05D004552 ORTHO05D005501 1.6e-167 593.2 432 88.2
Thhalv10013588m.g Eutrema salsugineum HOM05D004552 ORTHO05D005501 2.4e-163 579.3 437 84.0
Aa31LG1G22060 Aethionema arabicum HOM05D004552 ORTHO05D005501 2.4e-155 552.7 431 81.4
BcaC06g32015 Brassica carinata HOM05D004552 ORTHO05D005501 9.1e-155 550.8 418 85.2
THA.LOC104823245 Tarenaya hassleriana HOM05D004552 ORTHO05D005501 9.4e-152 540.8 433 79.0
C09p73810 Brassica napus HOM05D004552 ORTHO05D005501 2.1e-151 539.7 415 83.4
BolC9t60115H Brassica oleracea HOM05D004552 ORTHO05D005501 2.1e-151 539.7 415 83.4
A10p32880 Brassica napus HOM05D004552 ORTHO05D005501 5.7e-149 531.6 412 84.5
Thecc.05G052700 Theobroma cacao HOM05D004552 ORTHO05D005501 3.4e-125 452.6 437 68.9
Ciclev10011831m.g Citrus clementina HOM05D004552 ORTHO05D005501 3.0e-121 439.5 420 63.3
Atru.chr8.2543 Acer truncatum HOM05D004552 ORTHO05D005501 4.3e-120 435.6 425 67.3
ClCG04G008790 Citrullus lanatus HOM05D004552 ORTHO05D005501 5.6e-120 435.3 439 61.0
TWI53G0358 Tripterygium wilfordii HOM05D004552 ORTHO05D005501 2.8e-119 433.0 437 60.9
ClCG10G016170 Citrullus lanatus HOM05D004552 ORTHO05D005501 1.1e-118 431.0 417 61.2
QL07p045485 Quercus lobata HOM05D004552 ORTHO05D005501 5.2e-118 428.7 426 66.2
Haze_20666 Corylus avellana HOM05D004552 ORTHO05D005501 1.3e-116 424.1 431 62.6
Duzib106G1297 Durio zibethinus HOM05D004552 ORTHO05D005501 1.3e-116 424.1 437 66.8
CsaV3_4G024350 Cucumis sativus L. HOM05D004552 ORTHO05D005501 2.9e-116 422.9 433 62.1
PGR004G2024 Punica granatum HOM05D004552 ORTHO05D005501 5.4e-115 418.7 434 61.3
Sed0010830 Sechium edule HOM05D004552 ORTHO05D005501 7.1e-115 418.3 439 61.0
MELO3C014263.2 Cucumis melo HOM05D004552 ORTHO05D005501 1.2e-114 417.5 436 61.5
CiPaw.09G181100 Carya illinoinensis HOM05D004552 ORTHO05D005501 6.0e-114 415.2 431 63.8
arahy.Tifrunner.gnm1.ann1.CZIV0N Arachis hypogaea HOM05D004552 ORTHO05D005501 3.0e-113 412.9 433 59.6
Cfa017496 Carpinus fangiana HOM05D004552 ORTHO05D005501 3.0e-113 412.9 431 60.3
arahy.Tifrunner.gnm1.ann1.LN9G9C Arachis hypogaea HOM05D004552 ORTHO05D005501 1.5e-112 410.6 433 59.4
RcHm_v2.0_Chr1g0360161 Rosa chinensis HOM05D004552 ORTHO05D005501 1.5e-112 410.6 434 61.5
arahy.Tifrunner.gnm1.ann1.6MTV2V Arachis hypogaea HOM05D004552 ORTHO05D005501 1.9e-112 410.2 433 59.4
Manes.08G002200 Manihot esculenta HOM05D004552 ORTHO05D005501 2.5e-112 409.8 438 65.1
Nitab4.5_0008076g0010 Nicotiana tabacum HOM05D004552 ORTHO05D005501 3.3e-112 409.5 428 60.5
Manes.09G079900 Manihot esculenta HOM05D004552 ORTHO05D005501 4.3e-112 409.1 435 60.0
arahy.Tifrunner.gnm1.ann1.URH0Q0 Arachis hypogaea HOM05D004552 ORTHO05D005501 7.3e-112 408.3 433 58.9
MSTRG.16520 Avicennia marina HOM05D004552 ORTHO05D005501 4.7e-111 405.6 435 61.1
Dinv37242 Davidia involucrata HOM05D004552 ORTHO05D005501 1.8e-110 403.7 435 61.1
Lj3g0026232 Lotus japonicus HOM05D004552 ORTHO05D005501 1.8e-110 403.7 436 58.9
Glyma.08G287300 Glycine max HOM05D004552 ORTHO05D005501 2.4e-110 403.3 436 59.2
VMungo0251G2800 Vigna mungo HOM05D004552 ORTHO05D005501 2.4e-110 403.3 417 61.2
Lj5g0019559 Lotus japonicus HOM05D004552 ORTHO05D005501 3.1e-110 402.9 436 58.9
Sopen02g031920 Solanum pennellii HOM05D004552 ORTHO05D005501 5.2e-110 402.1 429 61.1
Peaxi162Scf00569g00015 Petunia axillaris HOM05D004552 ORTHO05D005501 1.2e-109 401.0 430 59.1
Medtr6g089780 Medicago truncatula HOM05D004552 ORTHO05D005501 3.4e-109 399.4 435 57.9
Nitab4.5_0001952g0150 Nicotiana tabacum HOM05D004552 ORTHO05D005501 4.4e-109 399.1 414 60.9
Oeu029550.1 Olea europaea HOM05D004552 ORTHO05D005501 4.4e-109 399.1 420 61.0
RcHm_v2.0_Chr1g0361081 Rosa chinensis HOM05D004552 ORTHO05D005501 5.8e-109 398.7 438 58.4
Lj4g0012826 Lotus japonicus HOM05D004552 ORTHO05D005501 7.6e-109 398.3 436 58.7
Solyc02g087180.4 Solanum lycopersicum HOM05D004552 ORTHO05D005501 7.6e-109 398.3 429 60.4
Medtr8g075790 Medicago truncatula HOM05D004552 ORTHO05D005501 9.9e-109 397.9 433 58.0
CAN.G525.45 Capsicum annuum HOM05D004552 ORTHO05D005501 2.2e-108 396.7 429 59.0
Nitab4.5_0005206g0040 Nicotiana tabacum HOM05D004552 ORTHO05D005501 1.4e-107 394.0 415 61.0
Potri.016G084200 Populus trichocarpa HOM05D004552 ORTHO05D005501 1.4e-107 394.0 434 63.1
Hund08942 Selenicereus undatus HOM05D004552 ORTHO05D005501 1.4e-107 394.0 432 59.0
Actinidia19722 Actinidia chinensis HOM05D004552 ORTHO05D005501 1.9e-107 393.7 435 57.9
COL.COLO4_27097 Corchorus olitorius HOM05D004552 ORTHO05D005501 1.9e-107 393.7 341 67.2
TPR.G33503 Trifolium pratense HOM05D004552 ORTHO05D005501 2.4e-107 393.3 442 57.2
Rhsim10G0168100 Rhododendron simsii HOM05D004552 ORTHO05D005501 3.2e-107 392.9 429 58.7
Rhsim11G0041500 Rhododendron simsii HOM05D004552 ORTHO05D005501 4.2e-107 392.5 429 58.5
TAR369G0596 Trochodendron aralioides HOM05D004552 ORTHO05D005501 4.2e-107 392.5 419 59.7
EL10Ac7g16819 Beta vulgaris HOM05D004552 ORTHO05D005501 2.7e-106 389.8 437 57.2
Nitab4.5_0006780g0010 Nicotiana tabacum HOM05D004552 ORTHO05D005501 2.7e-106 389.8 428 59.6
Oeu026072.1 Olea europaea HOM05D004552 ORTHO05D005501 1.0e-105 387.9 420 60.0
Ca_22379_v3 Cicer arietinum L. HOM05D004552 ORTHO05D005501 1.3e-105 387.5 435 57.5
CANSAT56G3582 Cannabis sativa HOM05D004552 ORTHO05D005501 1.7e-105 387.1 425 64.0
Gohir.A03G063400 Gossypium hirsutum HOM05D004552 ORTHO05D005501 1.7e-105 387.1 355 64.8
Prupe.2G197600 Prunus persica HOM05D004552 ORTHO05D005501 1.7e-105 387.1 436 59.6
Glyma.13G067700 Glycine max HOM05D004552 ORTHO05D005501 2.3e-105 386.7 431 57.8
Phvul.003G261400 Phaseolus vulgaris HOM05D004552 ORTHO05D005501 5.1e-105 385.6 431 58.7
Lalb_Chr05g0229841 Lupinus albus HOM05D004552 ORTHO05D005501 6.6e-105 385.2 434 57.4
Ca_19605_v3 Cicer arietinum L. HOM05D004552 ORTHO05D005501 8.7e-105 384.8 435 57.7
Migut.K00511 Erythranthe guttata HOM05D004552 ORTHO05D005501 1.9e-104 383.6 431 58.7
Glyma.06G188800 Glycine max HOM05D004552 ORTHO05D005501 1.9e-104 383.6 436 57.1
Solyc04g014240.1 Solanum lycopersicum HOM05D004552 ORTHO05D005501 1.9e-104 383.6 429 62.0
FAN06G3324 Fragaria x ananassa HOM05D004552 ORTHO05D005501 2.5e-104 383.3 417 62.1
PSO832G0086 Papaver somniferum HOM05D004552 ORTHO05D005501 2.5e-104 383.3 422 59.5
CAN.G206.55 Capsicum annuum HOM05D004552 ORTHO05D005501 5.6e-104 382.1 429 60.4
FvH4_7g16920 Fragaria vesca HOM05D004552 ORTHO05D005501 5.6e-104 382.1 432 61.1
FAN03G3426 Fragaria x ananassa HOM05D004552 ORTHO05D005501 7.3e-104 381.7 432 61.6
Sopen04g006350 Solanum pennellii HOM05D004552 ORTHO05D005501 7.3e-104 381.7 429 62.0
CSS0033785 Camellia sinensis var. sinensis HOM05D004552 ORTHO05D005501 9.6e-104 381.3 432 56.2
FAN01G0370 Fragaria x ananassa HOM05D004552 ORTHO05D005501 2.1e-103 380.2 432 61.1
Gorai.003G108400 Gossypium raimondii HOM05D004552 ORTHO05D005501 3.6e-103 379.4 355 64.5
Rhsim11G0041800 Rhododendron simsii HOM05D004552 ORTHO05D005501 3.6e-103 379.4 427 57.6
Gohir.D03G102900 Gossypium hirsutum HOM05D004552 ORTHO05D005501 4.8e-103 379.0 355 64.5
Ah.14g084480 Amaranthus hybridus HOM05D004552 ORTHO05D005501 6.2e-103 378.6 419 57.3
PSO210G6420 Papaver somniferum HOM05D004552 ORTHO05D005501 6.2e-103 378.6 425 58.8
FAN06G4506 Fragaria x ananassa HOM05D004552 ORTHO05D005501 1.4e-102 377.5 432 60.9
Nn1g07079 Nelumbo nucifera HOM05D004552 ORTHO05D005501 2.4e-102 376.7 415 59.8
Cc00_g23990 Coffea canephora HOM05D004552 ORTHO05D005501 2.6e-101 373.2 436 56.0
FvH4_7g17650 Fragaria vesca HOM05D004552 ORTHO05D005501 2.6e-101 373.2 434 57.1
AUR62025361 Chenopodium quinoa HOM05D004552 ORTHO05D005501 5.8e-101 372.1 432 55.6
HanXRQChr05g0156781 Helianthus annuus HOM05D004552 ORTHO05D005501 1.7e-100 370.5 433 55.7
AUR62028362 Chenopodium quinoa HOM05D004552 ORTHO05D005501 2.2e-100 370.2 434 56.7
SalBow4G1233 Salvia bowleyana HOM05D004552 ORTHO05D005501 2.2e-100 370.2 416 60.1
Lsat_1_v5_gn_5_8941 Lactuca sativa HOM05D004552 ORTHO05D005501 3.8e-100 369.4 434 55.1
TPR.G27980 Trifolium pratense HOM05D004552 ORTHO05D005501 6.4e-100 368.6 355 60.8
Manes.09G080009 Manihot esculenta HOM05D004552 ORTHO05D005501 1.1e-99 367.9 345 62.0
Psat7g019080 Pisum sativum HOM05D004552 ORTHO05D005501 1.4e-99 367.5 457 54.0
Sc07g0006230 Simmondsia chinensis HOM05D004552 ORTHO05D005501 3.2e-99 366.3 429 61.1
DCAR_009290 Daucus carota HOM05D004552 ORTHO05D005501 1.7e-97 360.5 439 53.1
ECA246G2681 Erigeron canadensis HOM05D003206 ORTHO05D005207 3.0e-97 359.8 437 54.5
PGSC0003DMG400000510 Solanum tuberosum HOM05D004552 ORTHO05D005501 1.9e-96 357.1 338 64.2
unitig_899.g15236 Utricularia gibba HOM05D004552 ORTHO05D005501 1.9e-96 357.1 417 56.1
CDE04G3741 Ceratophyllum demersum HOM05D004552 ORTHO05D005501 2.5e-96 356.7 409 54.3
FAN03G1811 Fragaria x ananassa HOM05D004552 ORTHO05D005501 9.6e-96 354.8 419 57.3
DCAR_002493 Daucus carota HOM05D004552 ORTHO05D005501 1.6e-95 354.0 436 55.0
Eucgr.J03059 Eucalyptus grandis HOM05D004552 ORTHO05D005501 2.1e-95 353.6 444 61.5
arahy.Tifrunner.gnm1.ann1.52IM1F Arachis hypogaea HOM05D004552 ORTHO05D005501 4.8e-95 352.4 320 64.7
FAN06G0991 Fragaria x ananassa HOM05D004552 ORTHO05D005501 8.1e-95 351.7 431 57.3
Lj6g0002066 Lotus japonicus HOM05D004552 ORTHO05D005501 9.0e-94 348.2 415 54.5
Aqoxy4G02198 Aquilegia oxysepala HOM05D004552 ORTHO05D005501 2.6e-93 346.7 428 56.8
Sabra16G0091200 Salix brachista HOM05D004552 ORTHO05D005501 4.5e-93 345.9 339 65.8
SHI12593 Sapria himalayana HOM05D004552 ORTHO05D005501 1.7e-92 344.0 432 52.3
Lj6g0014683 Lotus japonicus HOM05D004552 ORTHO05D005501 8.7e-89 331.6 390 57.4
SGA_v2.0_scaffold204G41624 Striga asiatica HOM05D004552 ORTHO05D005501 3.3e-88 329.7 441 54.0
vmacro04719 Vaccinium macrocarpon HOM05D004552 ORTHO05D005501 1.3e-84 317.8 330 63.0
Cc03_g15870 Coffea canephora HOM05D004552 ORTHO05D005501 2.9e-84 316.6 433 51.3
Psat4g100360 Pisum sativum HOM05D004552 ORTHO05D005501 2.9e-84 316.6 355 57.5
MBI18_g25517_MAGBIO Magnolia biondii HOM05D004552 ORTHO05D005501 2.7e-82 310.1 335 57.0
Lj6g0013650 Lotus japonicus HOM05D004552 ORTHO05D005501 4.8e-79 299.3 421 52.3
PSO675G1725 Papaver somniferum HOM05D004552 ORTHO05D005501 1.1e-78 298.1 343 53.9
HPP92_012944 Vanilla planifolia HOM05D004552 ORTHO05D005501 2.7e-74 283.5 389 51.2
SGA_v2.0_scaffold94G28661 Striga asiatica HOM05D004552 ORTHO05D005501 1.0e-73 281.6 349 56.2
Os09g0540500 Oryza sativa ssp. japonica HOM05D004552 ORTHO05D005501 3.0e-73 280.0 415 47.5
ATR0950G002 Amborella trichopoda HOM05D004552 ORTHO05D005501 4.1e-70 269.6 349 51.3
A03p00930 Brassica napus HOM05D004552 ORTHO05D005501 1.0e-68 265.0 216 72.7
ATR0594G066 Amborella trichopoda HOM05D004552 ORTHO05D005501 2.9e-68 263.5 352 50.6
FAN01G0473 Fragaria x ananassa HOM05D004552 ORTHO05D005501 2.5e-67 260.4 420 47.4
Zm00001eb103820 Zea mays HOM05D004552 ORTHO05D005501 2.1e-66 257.3 356 46.9
BcaB01g05872 Brassica carinata HOM05D004552 ORTHO05D005501 2.5e-64 250.4 431 50.3
C03p01200 Brassica napus HOM05D004552 ORTHO05D005501 4.1e-62 243.0 268 62.3
BolC3t12680H Brassica oleracea HOM05D004552 ORTHO05D005501 4.1e-62 243.0 268 62.3
CDE07G0444 Ceratophyllum demersum HOM05D004552 ORTHO05D005501 2.9e-60 236.9 291 52.9
THA.LOC104827455 Tarenaya hassleriana HOM05D004552 ORTHO05D005501 3.2e-59 233.4 221 64.7
RhsimUnG0119000 Rhododendron simsii HOM05D004552 ORTHO05D005501 2.3e-57 227.3 247 60.3
SEGI_01207 Sequoiadendron giganteum HOM05D004552 ORTHO05D005501 3.0e-57 226.9 346 45.4
BraA03t09475Z Brassica rapa HOM05D004552 ORTHO05D005501 4.8e-47 193.0 179 62.6
Mapoly0007s0084 Marchantia polymorpha HOM05D004552 ORTHO05D005501 1.2e-42 178.3 276 39.1
BraA10t45325Z Brassica rapa HOM05D001414 ORTHO05D000619 3.6e-42 176.8 134 79.1
CSS0042772 Camellia sinensis var. sinensis HOM05D004552 ORTHO05D005501 8.0e-42 175.6 248 47.6
FvH4_6g20640 Fragaria vesca HOM05D004552 ORTHO05D005501 4.4e-40 169.9 235 45.1
SEGI_11500 Sequoiadendron giganteum HOM05D004552 ORTHO05D005501 7.5e-40 169.1 323 39.3
FAN14G1867 Fragaria x ananassa HOM05D004552 ORTHO05D005501 2.4e-38 164.1 237 44.7
Pp3c14_11490 Physcomitrium patens HOM05D004552 ORTHO05D005501 1.2e-37 161.8 277 36.5
AagrBONN_evm.TU.Sc2ySwM_362.1766 Anthoceros agrestis HOM05D004552 ORTHO05D005501 4.5e-37 159.8 275 37.8
Lsat_1_v5_gn_8_95200 Lactuca sativa HOM05D004552 ORTHO05D005501 5.0e-28 129.8 142 52.1
VMungo0647G0506 Vigna mungo HOM05D004552 ORTHO05D005501 4.2e-27 126.7 109 65.1
Actinidia11233 Actinidia chinensis HOM05D004552 ORTHO05D005501 7.2e-27 125.9 342 38.6
CBR_g38095 Chara braunii HOM05D004552 ORTHO05D005501 6.8e-25 119.4 254 33.5
PGSC0003DMG400023633 Solanum tuberosum HOM05D004552 ORTHO05D005501 6.3e-23 112.8 245 36.7
Lj3E543T1 Lonicera japonica HOM05D004552 ORTHO05D005501 1.6e-13 81.6 111 65.8
AagrBONN_evm.TU.Sc2ySwM_344.2458 Anthoceros agrestis HOM05D004552 ORTHO05D005501 1.7e-12 78.2 231 27.3
MCO09G463 Micromonas commoda HOM05D004552 ORTHO05D005501 7.5e-08 62.8 114 37.7


User provided reference genes

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