Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G42470 Arabidopsis lyrata HOM05D005056 ORTHO05D006487 4.6e-29 130.6 67 100.0
AL677U10020 Arabidopsis lyrata HOM05D005056 ORTHO05D006487 4.6e-29 130.6 67 100.0
AL5G17740 Arabidopsis lyrata HOM05D005056 ORTHO05D006487 9.3e-22 106.3 67 82.1
AT2G43650 Arabidopsis thaliana HOM05D005056 ORTHO05D006487 9.3e-22 106.3 64 82.8
AT3G28230 Arabidopsis thaliana HOM05D005056 ORTHO05D006487 6.0e-21 103.6 65 83.1
Carub.0004s2618 Capsella rubella HOM05D005056 ORTHO05D006487 1.0e-20 102.8 67 79.1
Aa31LG1G25370 Aethionema arabicum HOM05D005056 ORTHO05D006487 1.9e-19 98.6 64 79.7
Zm00001eb034060 Zea mays HOM05D005056 ORTHO05D006487 5.6e-19 97.1 67 70.1
CARHR138830 Cardamine hirsuta HOM05D005056 ORTHO05D006487 2.8e-18 94.7 62 80.6
BolC4t28563H Brassica oleracea HOM05D005056 ORTHO05D006487 3.1e-17 91.3 67 73.1
Ciclev10019145m.g Citrus clementina HOM05D005056 ORTHO05D006487 6.9e-17 90.1 64 73.4
Atru.chr3.3232 Acer truncatum HOM05D005056 ORTHO05D006487 3.4e-16 87.8 67 70.1
A04p32940 Brassica napus HOM05D005056 ORTHO05D001240 5.8e-16 87.0 67 70.1
Peaxi162Scf00568g00417 Petunia axillaris HOM05D005056 ORTHO05D006487 7.6e-16 86.7 67 70.1
Atru.chr4.1428 Acer truncatum HOM05D005056 ORTHO05D006487 9.9e-16 86.3 67 68.7
Eucgr.H00317 Eucalyptus grandis HOM05D005056 ORTHO05D006487 9.9e-16 86.3 64 70.3
FvH4_5g27692 Fragaria vesca HOM05D005056 ORTHO05D006487 9.9e-16 86.3 64 67.2
FAN04G0894 Fragaria x ananassa HOM05D005056 ORTHO05D006487 9.9e-16 86.3 64 67.2
FAN13G0846 Fragaria x ananassa HOM05D005056 ORTHO05D006487 9.9e-16 86.3 64 67.2
Os01g0104800 Oryza sativa ssp. japonica HOM05D005056 ORTHO05D006487 1.3e-15 85.9 64 67.2
Cpa.g.sc114.8 Carica papaya HOM05D005056 ORTHO05D006487 1.7e-15 85.5 64 70.3
RcHm_v2.0_Chr7g0219421 Rosa chinensis HOM05D005056 ORTHO05D006487 1.7e-15 85.5 64 68.8
Sp4g25750 Schrenkiella parvula HOM05D005056 ORTHO05D006487 2.2e-15 85.1 67 71.6
HanXRQChr14g0439801 Helianthus annuus HOM05D005056 ORTHO05D006487 2.9e-15 84.7 64 71.9
FAN12G0411 Fragaria x ananassa HOM05D005056 ORTHO05D006487 3.8e-15 84.3 64 67.2
FAN12G0483 Fragaria x ananassa HOM05D005056 ORTHO05D006487 3.8e-15 84.3 64 67.2
FAN18G4484 Fragaria x ananassa HOM05D005056 ORTHO05D006487 3.8e-15 84.3 64 65.6
Lalb_Chr16g0384481 Lupinus albus HOM05D005056 ORTHO05D006487 3.8e-15 84.3 67 65.7
CDE04G2996 Ceratophyllum demersum HOM05D005056 ORTHO05D006487 4.9e-15 84.0 62 71.0
FAN08G2023 Fragaria x ananassa HOM05D005056 ORTHO05D006487 4.9e-15 84.0 64 65.6
vmacro03868 Vaccinium macrocarpon HOM05D005056 ORTHO05D006487 4.9e-15 84.0 64 67.2
COL.COLO4_09146 Corchorus olitorius HOM05D005056 ORTHO05D006487 1.1e-14 82.8 67 68.7
Haze_01366 Corylus avellana HOM05D005056 ORTHO05D006487 1.4e-14 82.4 64 67.2
Migut.N03070 Erythranthe guttata HOM05D005056 ORTHO05D006487 1.4e-14 82.4 67 64.2
SalBow1G2014 Salvia bowleyana HOM05D005056 ORTHO05D006487 1.4e-14 82.4 67 64.2
TAR636G2681 Trochodendron aralioides HOM05D005056 ORTHO05D006487 1.4e-14 82.4 64 67.2
Manes.16G069500 Manihot esculenta HOM05D005056 ORTHO05D006487 2.4e-14 81.6 63 66.7
Nitab4.5_0002129g0080 Nicotiana tabacum HOM05D005056 ORTHO05D006487 2.4e-14 81.6 61 70.5
Duzib128G0002 Durio zibethinus HOM05D005056 ORTHO05D006487 4.2e-14 80.9 67 67.2
Thecc.05G215400 Theobroma cacao HOM05D005056 ORTHO05D006487 4.2e-14 80.9 67 67.2
TWI38G0332 Tripterygium wilfordii HOM05D005056 ORTHO05D006487 4.2e-14 80.9 67 67.2
PGR142G4138 Punica granatum HOM05D005056 ORTHO05D006487 5.5e-14 80.5 64 65.6
BcaB01g03369 Brassica carinata HOM05D005056 ORTHO05D006487 7.1e-14 80.1 67 68.7
BcaC01g05222 Brassica carinata HOM05D005056 ORTHO05D006487 7.1e-14 80.1 67 68.7
CSS0024905 Camellia sinensis var. sinensis HOM05D005056 ORTHO05D006487 7.1e-14 80.1 64 67.2
DCAR_019081 Daucus carota HOM05D005056 ORTHO05D006487 7.1e-14 80.1 67 65.7
CANSAT56G3616 Cannabis sativa HOM05D005056 ORTHO05D006487 9.3e-14 79.7 67 61.2
Cc03_g13950 Coffea canephora HOM05D005056 ORTHO05D006487 9.3e-14 79.7 64 68.8
Lj4g0012801 Lotus japonicus HOM05D005056 ORTHO05D006487 9.3e-14 79.7 64 65.6
TPR.G1297 Trifolium pratense HOM05D005056 ORTHO05D006487 9.3e-14 79.7 67 62.7
Nitab4.5_0001802g0080 Nicotiana tabacum HOM05D005056 ORTHO05D006487 1.2e-13 79.3 61 68.9
PSO170G2549 Papaver somniferum HOM05D005056 ORTHO05D006487 1.2e-13 79.3 64 64.1
PSO302G0034 Papaver somniferum HOM05D005056 ORTHO05D006487 1.2e-13 79.3 64 64.1
Lj1g0023120 Lotus japonicus HOM05D005056 ORTHO05D006487 1.6e-13 79.0 64 65.6
MBI18_g06087_MAGBIO Magnolia biondii HOM05D005056 ORTHO05D006487 1.6e-13 79.0 64 67.2
MD17G1177700 Malus domestica HOM05D005056 ORTHO05D006487 1.6e-13 79.0 64 65.6
GSVIVG01038137001 Vitis vinifera HOM05D005056 ORTHO05D006487 1.6e-13 79.0 64 65.6
C03p29070 Brassica napus HOM05D005056 ORTHO05D006487 2.1e-13 78.6 67 67.2
Prupe.1G206800 Prunus persica HOM05D005056 ORTHO05D006487 2.1e-13 78.6 64 65.6
QL10p054991 Quercus lobata HOM05D005056 ORTHO05D006487 2.1e-13 78.6 63 63.5
QL93p1902_0036 Quercus lobata HOM05D005056 ORTHO05D006487 2.1e-13 78.6 63 63.5
Gohir.A04G120600 Gossypium hirsutum HOM05D005056 ORTHO05D006487 2.7e-13 78.2 67 64.2
Medtr4g087270 Medicago truncatula HOM05D005056 ORTHO05D006487 2.7e-13 78.2 64 64.1
A03p24390 Brassica napus HOM05D005056 ORTHO05D006487 3.5e-13 77.8 66 65.2
arahy.Tifrunner.gnm1.ann1.K7ZH1T Arachis hypogaea HOM05D005056 ORTHO05D006487 4.6e-13 77.4 64 65.6
arahy.Tifrunner.gnm1.ann1.X1H480 Arachis hypogaea HOM05D005056 ORTHO05D006487 4.6e-13 77.4 64 65.6
C04p70610 Brassica napus HOM05D005056 ORTHO05D006487 6.0e-13 77.0 67 65.7
SGA_v2.0_scaffold289G47281 Striga asiatica HOM05D005056 ORTHO05D006487 6.0e-13 77.0 61 65.6
Dinv04468 Davidia involucrata HOM05D005056 ORTHO05D006487 7.9e-13 76.6 64 62.5
SEGI_33254 Sequoiadendron giganteum HOM05D005056 ORTHO05D006487 7.9e-13 76.6 64 64.1
TPR.G23553 Trifolium pratense HOM05D005056 ORTHO05D006487 7.9e-13 76.6 64 62.5
Glyma.02G137100 Glycine max HOM05D005056 ORTHO05D006487 1.0e-12 76.3 67 61.2
Glyma.07G208300 Glycine max HOM05D005056 ORTHO05D006487 1.0e-12 76.3 67 61.2
Psat7g121360 Pisum sativum HOM05D005056 ORTHO05D006487 1.0e-12 76.3 64 60.9
VMungo0251G2998 Vigna mungo HOM05D005056 ORTHO05D006487 1.0e-12 76.3 64 64.1
Gohir.D04G162100 Gossypium hirsutum HOM05D005056 ORTHO05D006487 1.3e-12 75.9 67 62.7
Gorai.012G150100 Gossypium raimondii HOM05D005056 ORTHO05D006487 1.3e-12 75.9 67 62.7
Potri.013G125800 Populus trichocarpa HOM05D005056 ORTHO05D006487 1.3e-12 75.9 64 64.1
Sabra13G0104700 Salix brachista HOM05D005056 ORTHO05D006487 1.3e-12 75.9 64 64.1
Sabra13G0105000 Salix brachista HOM05D005056 ORTHO05D006487 1.3e-12 75.9 64 64.1
Sabra13G0105200 Salix brachista HOM05D005056 ORTHO05D006487 1.3e-12 75.9 64 64.1
Sabra13G0105300 Salix brachista HOM05D005056 ORTHO05D006487 1.3e-12 75.9 64 64.1
Solyc11g072320.3 Solanum lycopersicum HOM05D005056 ORTHO05D006487 1.3e-12 75.9 64 65.6
Solyc11g072390.2 Solanum lycopersicum HOM05D005056 ORTHO05D006487 1.3e-12 75.9 64 65.6
Sopen11g029990 Solanum pennellii HOM05D005056 ORTHO05D006487 1.3e-12 75.9 64 65.6
Sopen11g030040 Solanum pennellii HOM05D005056 ORTHO05D006487 1.3e-12 75.9 64 65.6
Rhsim13G0194600 Rhododendron simsii HOM05D005056 ORTHO05D006656 2.3e-12 75.1 64 64.1
BraA04t18751Z Brassica rapa HOM05D005056 ORTHO05D006487 3.0e-12 74.7 67 64.2
Hma1.2p1_0150F.1_g066790 Hydrangea macrophylla HOM05D005056 ORTHO05D006487 3.0e-12 74.7 62 62.9
Phvul.003G296300 Phaseolus vulgaris HOM05D005056 ORTHO05D006487 3.0e-12 74.7 64 62.5
Pp3c13_22260 Physcomitrium patens HOM05D005056 ORTHO05D006487 3.0e-12 74.7 64 64.1
Hma1.2p1_0150F.1_g066780 Hydrangea macrophylla HOM05D005056 ORTHO05D006487 3.9e-12 74.3 62 62.9
HPP92_014516 Vanilla planifolia HOM05D005056 ORTHO05D006487 5.1e-12 73.9 54 72.2
Actinidia11444 Actinidia chinensis HOM05D005056 ORTHO05D006487 8.7e-12 73.2 52 71.2
C04p70630 Brassica napus HOM05D005056 ORTHO05D006487 8.7e-12 73.2 67 62.7
BolC4t28565H Brassica oleracea HOM05D005056 ORTHO05D006487 8.7e-12 73.2 67 62.7
Mapoly0041s0093 Marchantia polymorpha HOM05D005056 ORTHO05D006403 8.7e-12 73.2 64 64.1
Sc08g0000580 Simmondsia chinensis HOM05D005056 ORTHO05D006487 1.5e-11 72.4 64 64.1
Ah.01g019270 Amaranthus hybridus HOM05D005056 ORTHO05D006487 1.9e-11 72.0 60 61.7
A04p32930 Brassica napus HOM05D005056 ORTHO05D006487 1.9e-11 72.0 65 63.1
EL10Ac9g21710 Beta vulgaris HOM05D005056 ORTHO05D006487 2.5e-11 71.6 60 65.0
Aqoxy5G00514 Aquilegia oxysepala HOM05D005056 ORTHO05D006487 4.3e-11 70.9 66 62.1
CAN.G308.62 Capsicum annuum HOM05D005056 ORTHO05D006487 4.3e-11 70.9 60 65.0
ECA238G2929 Erigeron canadensis HOM05D005056 ORTHO05D006487 9.6e-11 69.7 64 62.5
ATR0763G045 Amborella trichopoda HOM05D005056 ORTHO05D006487 1.6e-10 68.9 60 60.0
AagrBONN_evm.TU.Sc2ySwM_228.4407 Anthoceros agrestis HOM05D005056 ORTHO05D006403 1.6e-10 68.9 64 59.4
CSS0004898 Camellia sinensis var. sinensis HOM05D005056 ORTHO05D006487 2.1e-10 68.6 59 59.3
SMO358G0450 Selaginella moellendorffii HOM05D005056 ORTHO05D006487 2.1e-10 68.6 63 61.9
AUR62016753 Chenopodium quinoa HOM05D005056 ORTHO05D006487 2.8e-10 68.2 61 57.4
CBR_g34512 Chara braunii HOM05D005056 ORTHO05D006403 4.8e-10 67.4 65 56.9
CsaV3_6G007040 Cucumis sativus L. HOM05D005056 ORTHO05D006487 4.8e-10 67.4 64 57.8
MELO3C022426.2 Cucumis melo HOM05D005056 ORTHO05D006487 1.4e-09 65.9 64 57.8
Oeu018046.1 Olea europaea HOM05D005056 ORTHO05D006487 2.4e-09 65.1 64 59.4
FvH4_4g18081 Fragaria vesca HOM05D005056 ORTHO05D006487 1.2e-08 62.8 64 56.2
Sed0010490 Sechium edule HOM05D005056 ORTHO05D006487 1.2e-08 62.8 64 56.2
MCO16G233 Micromonas commoda HOM05D005594 ORTHO05D006403 2.0e-08 62.0 63 55.6
Lsat_1_v5_gn_2_46281 Lactuca sativa HOM05D005056 ORTHO05D006487 2.6e-08 61.6 61 59.0
Hund06242 Selenicereus undatus HOM05D005056 ORTHO05D006487 2.6e-08 61.6 62 58.1
ClCG06G001090 Citrullus lanatus HOM05D005056 ORTHO05D006487 3.4e-08 61.2 60 58.3
SMO367G0368 Selaginella moellendorffii HOM05D005056 ORTHO05D006487 3.4e-08 61.2 61 55.7
Ca_18642_v3 Cicer arietinum L. HOM05D005056 ORTHO05D006487 1.3e-07 59.3 48 64.6
THA.LOC104803998 Tarenaya hassleriana HOM05D005056 ORTHO05D006487 2.2e-07 58.5 63 52.4
BolC3t15261H Brassica oleracea HOM05D000026 ORTHO05D000094 3.8e-07 57.8 50 66.0
BraA03t11648Z Brassica rapa HOM05D005056 ORTHO05D006487 1.1e-06 56.2 50 64.0
Oeu018048.1 Olea europaea HOM05D005056 ORTHO05D006487 1.4e-06 55.8 47 66.0
QL10p055605 Quercus lobata HOM05D005056 ORTHO05D006487 2.5e-06 55.1 63 50.8


User provided reference genes

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