Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G43890 Arabidopsis lyrata HOM05D004048 ORTHO05D004859 5.7e-195 684.1 354 100.0
AT3G61530 Arabidopsis thaliana HOM05D004048 ORTHO05D004859 2.6e-187 658.7 355 96.9
Sp5g01880 Schrenkiella parvula HOM05D004048 ORTHO05D004859 1.3e-183 646.4 354 94.1
BcaB02g07374 Brassica carinata HOM05D004048 ORTHO05D004859 4.7e-181 637.9 348 93.7
BraA07t30196Z Brassica rapa HOM05D004048 ORTHO05D004859 2.6e-179 632.1 346 93.6
BolC6t37921H Brassica oleracea HOM05D004048 ORTHO05D004859 4.4e-179 631.3 346 93.4
A07p25550 Brassica napus HOM05D004048 ORTHO05D004859 5.7e-179 630.9 346 93.4
BcaC08g45130 Brassica carinata HOM05D004048 ORTHO05D004859 9.8e-179 630.2 346 93.1
C06p27540 Brassica napus HOM05D004048 ORTHO05D004859 8.3e-178 627.1 346 92.8
A09p53600 Brassica napus HOM05D004048 ORTHO05D004859 9.1e-177 623.6 354 91.0
Thhalv10001521m.g Eutrema salsugineum HOM05D004048 ORTHO05D004859 3.5e-176 621.7 354 89.5
BcaC07g40651 Brassica carinata HOM05D004048 ORTHO05D004859 4.5e-176 621.3 354 90.4
BolC8t51222H Brassica oleracea HOM05D004048 ORTHO05D004859 4.5e-176 621.3 354 90.4
C08p36390 Brassica napus HOM05D004048 ORTHO05D004859 1.0e-175 620.2 354 90.4
BraA09t40782Z Brassica rapa HOM05D004048 ORTHO05D004859 3.8e-175 618.2 354 91.0
Sp4g28180 Schrenkiella parvula HOM05D004048 ORTHO05D004859 3.8e-175 618.2 351 89.5
Aa31LG10G15450 Aethionema arabicum HOM05D004048 ORTHO05D004859 1.9e-174 615.9 356 88.5
AT2G46110 Arabidopsis thaliana HOM05D004048 ORTHO05D004859 5.5e-174 614.4 347 89.9
Carub.0004s2881 Capsella rubella HOM05D004048 ORTHO05D004859 2.1e-173 612.5 347 89.6
THA.LOC104817317 Tarenaya hassleriana HOM05D004048 ORTHO05D004859 5.7e-171 604.4 348 88.5
Carub.0005s2822 Capsella rubella HOM05D004048 ORTHO05D004859 9.8e-171 603.6 331 93.4
BcaC07g40671 Brassica carinata HOM05D004048 ORTHO05D004859 1.0e-167 593.6 361 86.7
Dinv32522 Davidia involucrata HOM05D004048 ORTHO05D004859 6.1e-165 584.3 353 84.7
Potri.014G090500 Populus trichocarpa HOM05D004048 ORTHO05D004859 8.0e-165 583.9 333 87.4
TWI23G0617 Tripterygium wilfordii HOM05D004048 ORTHO05D004859 8.0e-165 583.9 334 88.6
Hund27241 Selenicereus undatus HOM05D004048 ORTHO05D004859 6.8e-164 580.9 329 88.4
CSS0029554 Camellia sinensis var. sinensis HOM05D004048 ORTHO05D004859 8.9e-164 580.5 342 85.4
MD07G1131200 Malus domestica HOM05D004048 ORTHO05D004859 8.9e-164 580.5 345 84.6
QL04p055532 Quercus lobata HOM05D004048 ORTHO05D004859 1.2e-163 580.1 337 86.6
CSS0027402 Camellia sinensis var. sinensis HOM05D004048 ORTHO05D004859 2.6e-163 578.9 342 85.1
Manes.05G029300 Manihot esculenta HOM05D004048 ORTHO05D004859 2.6e-163 578.9 344 83.4
Ciclev10020577m.g Citrus clementina HOM05D004048 ORTHO05D004859 4.4e-163 578.2 339 85.5
DCAR_025214 Daucus carota HOM05D004048 ORTHO05D004859 4.4e-163 578.2 346 85.0
COL.COLO4_12778 Corchorus olitorius HOM05D004048 ORTHO05D004859 1.7e-162 576.2 344 84.3
Prupe.2G177600 Prunus persica HOM05D004048 ORTHO05D004859 3.7e-162 575.1 346 84.1
Sabra14G0065600 Salix brachista HOM05D004048 ORTHO05D004859 3.7e-162 575.1 353 82.7
Actinidia10075 Actinidia chinensis HOM05D004048 ORTHO05D004859 4.9e-162 574.7 338 86.4
vmacro13227 Vaccinium macrocarpon HOM05D004048 ORTHO05D004859 8.3e-162 573.9 334 86.5
Lj9C589T5 Lonicera japonica HOM05D004048 ORTHO05D004859 5.4e-161 571.2 349 83.4
Sc01g0003210 Simmondsia chinensis HOM05D004048 ORTHO05D004859 5.4e-161 571.2 329 86.3
FvH4_7g15370 Fragaria vesca HOM05D004048 ORTHO05D004859 7.0e-161 570.9 348 83.0
FAN06G1753 Fragaria x ananassa HOM05D004048 ORTHO05D004859 9.2e-161 570.5 348 83.0
Hma1.2p1_0335F.1_g128890 Hydrangea macrophylla HOM05D004048 ORTHO05D004859 9.2e-161 570.5 342 83.9
TAR375G1056 Trochodendron aralioides HOM05D004048 ORTHO05D004859 9.2e-161 570.5 341 84.2
Migut.B01799 Erythranthe guttata HOM05D004048 ORTHO05D004859 1.6e-160 569.7 345 82.3
CAN.G439.29 Capsicum annuum HOM05D004048 ORTHO05D004859 3.5e-160 568.5 329 86.3
CiPaw.02G034800 Carya illinoinensis HOM05D004048 ORTHO05D004859 4.6e-160 568.2 348 83.3
Haze_15565 Corylus avellana HOM05D004048 ORTHO05D004859 5.9e-160 567.8 354 81.4
Nitab4.5_0000615g0020 Nicotiana tabacum HOM05D004048 ORTHO05D004859 7.8e-160 567.4 331 85.2
PSO170G0644 Papaver somniferum HOM05D004048 ORTHO05D004859 7.8e-160 567.4 341 82.1
Eucgr.B01988 Eucalyptus grandis HOM05D004048 ORTHO05D004859 1.3e-159 566.6 332 85.8
FAN10G1698 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.3e-159 566.6 347 82.7
FAN10G3606 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.3e-159 566.6 347 82.7
Rhsim07G0205800 Rhododendron simsii HOM05D004048 ORTHO05D004859 3.0e-159 565.5 363 80.2
Thecc.01G352400 Theobroma cacao HOM05D004048 ORTHO05D004859 5.0e-159 564.7 351 81.5
PSO063G1481 Papaver somniferum HOM05D004048 ORTHO05D004859 8.6e-159 563.9 341 81.5
FAN03G0096 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.5e-158 563.1 347 82.1
RcHm_v2.0_Chr1g0357691 Rosa chinensis HOM05D004048 ORTHO05D004859 1.5e-158 563.1 331 84.3
Solyc09g007130.3 Solanum lycopersicum HOM05D004048 ORTHO05D004859 1.9e-158 562.8 326 85.9
PGSC0003DMG400002011 Solanum tuberosum HOM05D004048 ORTHO05D004859 1.9e-158 562.8 329 84.8
Gohir.D08G043100 Gossypium hirsutum HOM05D004048 ORTHO05D004859 3.3e-158 562.0 337 84.3
FAN06G0189 Fragaria x ananassa HOM05D004048 ORTHO05D004859 4.3e-158 561.6 365 79.5
Aqoxy5G04084 Aquilegia oxysepala HOM05D004048 ORTHO05D004859 7.3e-158 560.8 326 85.6
Gorai.004G041700 Gossypium raimondii HOM05D004048 ORTHO05D004859 7.3e-158 560.8 337 84.3
Peaxi162Scf00217g00711 Petunia axillaris HOM05D004048 ORTHO05D004859 7.3e-158 560.8 336 84.2
Gohir.A08G032200 Gossypium hirsutum HOM05D004048 ORTHO05D004859 1.6e-157 559.7 351 81.2
Atru.chr7.1494 Acer truncatum HOM05D004048 ORTHO05D004859 2.1e-157 559.3 350 81.1
AUR62004413 Chenopodium quinoa HOM05D004048 ORTHO05D004859 3.6e-157 558.5 334 83.2
CsaV3_7G025860 Cucumis sativus L. HOM05D004048 ORTHO05D004859 3.6e-157 558.5 336 82.1
SGA_v2.0_scaffold4G02279 Striga asiatica HOM05D004048 ORTHO05D004859 4.7e-157 558.1 330 83.6
EL10Ac1g00354 Beta vulgaris HOM05D004048 ORTHO05D004859 1.4e-156 556.6 327 83.2
Nn1g01686 Nelumbo nucifera HOM05D004048 ORTHO05D004859 1.4e-156 556.6 344 80.5
Duzib268G0835 Durio zibethinus HOM05D004048 ORTHO05D004859 3.1e-156 555.4 342 81.6
PGR004G0897 Punica granatum HOM05D004048 ORTHO05D004859 3.1e-156 555.4 344 81.4
Cc02_g21240 Coffea canephora HOM05D004048 ORTHO05D004859 5.2e-156 554.7 325 84.0
Lj1g0027864 Lotus japonicus HOM05D004048 ORTHO05D004859 6.4e-154 547.7 344 79.4
VMungo0331G0386 Vigna mungo HOM05D004048 ORTHO05D004859 8.3e-154 547.4 339 80.5
CARHR107270 Cardamine hirsuta HOM05D004048 ORTHO05D004859 1.1e-153 547.0 349 83.1
Gohir.D08G154300 Gossypium hirsutum HOM05D004048 ORTHO05D004859 1.9e-153 546.2 337 81.6
Gorai.004G160400 Gossypium raimondii HOM05D004048 ORTHO05D004859 1.9e-153 546.2 337 81.6
arahy.Tifrunner.gnm1.ann1.9CR96V Arachis hypogaea HOM05D004048 ORTHO05D004859 1.2e-152 543.5 337 80.1
HanXRQChr17g0562171 Helianthus annuus HOM05D004048 ORTHO05D004859 1.2e-152 543.5 328 82.9
Lj5g0009706 Lotus japonicus HOM05D004048 ORTHO05D004859 1.2e-152 543.5 343 79.9
Glyma.07G064600 Glycine max HOM05D004048 ORTHO05D004859 1.6e-152 543.1 333 81.7
MBI03_g34597_MAGBIO Magnolia biondii HOM05D004048 ORTHO05D004859 3.5e-152 542.0 324 82.7
arahy.Tifrunner.gnm1.ann1.8BBS1S Arachis hypogaea HOM05D004048 ORTHO05D004859 6.0e-152 541.2 337 79.8
CANSAT56G4107 Cannabis sativa HOM05D004048 ORTHO05D004859 6.0e-152 541.2 343 79.9
Lsat_1_v5_gn_4_35260 Lactuca sativa HOM05D004048 ORTHO05D004859 3.9e-151 538.5 326 82.8
MELO3C014805.2 Cucumis melo HOM05D004048 ORTHO05D004859 2.5e-150 535.8 336 79.2
TPR.G28287 Trifolium pratense HOM05D004048 ORTHO05D004859 4.3e-150 535.0 326 82.2
Nitab4.5_0005222g0030 Nicotiana tabacum HOM05D004048 ORTHO05D004859 5.6e-150 534.6 326 83.1
RcHm_v2.0_Chr1g0357711 Rosa chinensis HOM05D004048 ORTHO05D004859 9.5e-150 533.9 329 79.9
Duzib138G1147 Durio zibethinus HOM05D004048 ORTHO05D004859 1.6e-149 533.1 372 74.5
Rhsim07G0010400 Rhododendron simsii HOM05D004048 ORTHO05D004859 1.6e-149 533.1 327 83.2
Lalb_Chr17g0338041 Lupinus albus HOM05D004048 ORTHO05D004859 2.8e-149 532.3 336 79.5
Psat4g156920 Pisum sativum HOM05D004048 ORTHO05D004859 2.8e-149 532.3 332 80.1
Medtr8g028555 Medicago truncatula HOM05D004048 ORTHO05D004859 1.1e-148 530.4 341 77.7
arahy.Tifrunner.gnm1.ann1.8G3C0P Arachis hypogaea HOM05D004048 ORTHO05D004859 1.4e-148 530.0 326 79.8
HPP92_005267 Vanilla planifolia HOM05D004048 ORTHO05D004859 4.0e-148 528.5 328 79.9
MELO3C012767.2 Cucumis melo HOM05D004048 ORTHO05D004859 3.4e-147 525.4 404 68.6
TPR.G37181 Trifolium pratense HOM05D004048 ORTHO05D004859 7.5e-147 524.2 326 79.8
Oeu054354.2 Olea europaea HOM05D004048 ORTHO05D004859 2.2e-146 522.7 370 73.0
AUR62022619 Chenopodium quinoa HOM05D004048 ORTHO05D004859 2.9e-146 522.3 301 85.0
Ca_03490_v3 Cicer arietinum L. HOM05D004048 ORTHO05D004859 2.7e-144 515.8 372 72.8
Sopen09g002000 Solanum pennellii HOM05D004048 ORTHO05D004859 6.0e-144 514.6 297 86.5
Rhsim07G0206900 Rhododendron simsii HOM05D004048 ORTHO05D004859 2.5e-142 509.2 380 71.3
ClCG09G009090 Citrullus lanatus HOM05D004048 ORTHO05D004859 3.4e-139 498.8 334 75.7
FvH4_7g15371 Fragaria vesca HOM05D004048 ORTHO05D004859 7.6e-139 497.7 360 71.1
Ah.05g180160 Amaranthus hybridus HOM05D004048 ORTHO05D004859 9.9e-139 497.3 347 75.2
SEGI_12250 Sequoiadendron giganteum HOM05D004048 ORTHO05D004859 2.9e-138 495.7 331 72.5
unitig_60.g25627 Utricularia gibba HOM05D004048 ORTHO05D004859 8.4e-138 494.2 329 76.3
Phvul.010G104900 Phaseolus vulgaris HOM05D004048 ORTHO05D004859 4.6e-136 488.4 286 84.6
BcaC07g42671 Brassica carinata HOM05D004048 ORTHO05D004859 6.4e-130 468.0 352 73.6
Cpa.g.sc11.73 Carica papaya HOM05D004048 ORTHO05D004859 5.4e-129 464.9 332 74.1
GSVIVG01026967001 Vitis vinifera HOM05D004048 ORTHO05D004859 6.0e-128 461.5 262 89.3
Mapoly0035s0043 Marchantia polymorpha HOM05D004048 ORTHO05D004859 8.7e-127 457.6 350 66.9
Pp3c7_220 Physcomitrium patens HOM05D004048 ORTHO05D004859 5.6e-126 454.9 334 67.1
AagrBONN_evm.TU.Sc2ySwM_117.1042 Anthoceros agrestis HOM05D004048 ORTHO05D004859 1.8e-124 449.9 326 69.0
AagrBONN_evm.TU.Sc2ySwM_117.2358 Anthoceros agrestis HOM05D004048 ORTHO05D004859 5.3e-124 448.4 326 68.7
Glyma.09G254700 Glycine max HOM05D004048 ORTHO05D004859 6.9e-124 448.0 310 73.2
FAN10G3616 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.2e-123 447.2 367 65.9
SMO144G0210 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 5.8e-123 444.9 345 64.3
Os01g0225500 Oryza sativa ssp. japonica HOM05D004048 ORTHO05D004859 9.9e-123 444.1 302 72.8
ECA234G0147 Erigeron canadensis HOM05D004048 ORTHO05D004859 3.0e-119 432.6 297 76.8
MCO13G154 Micromonas commoda HOM05D004048 ORTHO05D004859 5.1e-119 431.8 317 68.1
Gohir.A08G133000 Gossypium hirsutum HOM05D004048 ORTHO05D004859 7.4e-118 427.9 269 81.4
Cre12.g508550 Chlamydomonas reinhardtii HOM05D004048 ORTHO05D004859 2.8e-117 426.0 325 64.6
CBR_g45417 Chara braunii HOM05D004048 ORTHO05D004859 9.0e-116 421.0 342 61.4
CDE11G0110 Ceratophyllum demersum HOM05D004048 ORTHO05D004859 8.4e-114 414.5 248 83.9
Nn6g32447 Nelumbo nucifera HOM05D004048 ORTHO05D004859 1.6e-109 400.2 336 64.6
FAN06G1997 Fragaria x ananassa HOM05D004048 ORTHO05D004859 3.7e-109 399.1 370 59.2
Zm00001eb339000 Zea mays HOM05D004048 ORTHO05D004859 9.0e-108 394.4 247 81.8
Medtr4g037305 Medicago truncatula HOM05D004048 ORTHO05D004859 1.2e-107 394.0 241 81.7
ATR0751G082 Amborella trichopoda HOM05D004048 ORTHO05D004859 2.9e-106 389.4 238 81.9
FAN06G4041 Fragaria x ananassa HOM05D004048 ORTHO05D004859 6.5e-106 388.3 275 72.0
SMO356G0035 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 5.5e-105 385.2 300 64.0
SMO119G0299 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 6.0e-104 381.7 273 67.8
Eucgr.B01984 Eucalyptus grandis HOM05D004048 ORTHO05D004859 2.2e-101 373.2 360 59.4
SEGI_21771 Sequoiadendron giganteum HOM05D004048 ORTHO05D004859 2.8e-101 372.9 243 74.9
FAN10G1509 Fragaria x ananassa HOM05D004048 ORTHO05D004859 4.5e-99 365.5 247 76.5
ATR0751G137 Amborella trichopoda HOM05D004048 ORTHO05D004859 1.1e-97 360.9 233 76.8
PRCOL_00005166 Prasinoderma coloniale HOM05D004048 ORTHO05D004859 9.4e-97 357.8 337 55.2
AL4G45340 Arabidopsis lyrata HOM05D004048 ORTHO05D004859 1.0e-95 354.4 199 89.9
Eucgr.B01986 Eucalyptus grandis HOM05D004048 ORTHO05D004859 3.8e-74 282.7 285 58.2
Medtr4g037245 Medicago truncatula HOM05D004048 ORTHO05D004859 1.1e-73 281.2 203 73.4
Cfa001640 Carpinus fangiana HOM05D004048 ORTHO05D004859 6.8e-63 245.4 283 47.7
arahy.Tifrunner.gnm1.ann1.CIF5FW Arachis hypogaea HOM05D004048 ORTHO05D004859 2.0e-59 233.8 152 73.7
SEGI_25526 Sequoiadendron giganteum HOM05D004048 ORTHO05D004859 2.3e-58 230.3 161 68.3
PGSC0003DMG400018716 Solanum tuberosum HOM05D004048 ORTHO05D004859 5.7e-54 215.7 138 79.0
Os01g0225400 Oryza sativa ssp. japonica HOM05D004048 ORTHO05D004859 8.3e-53 211.8 129 79.8
Cfa003872 Carpinus fangiana HOM05D004048 ORTHO05D004859 7.0e-52 208.8 352 43.8
TPR.G28294 Trifolium pratense HOM05D004048 ORTHO05D004859 7.8e-51 205.3 251 51.0
SHI16536 Sapria himalayana HOM05D004048 ORTHO05D004859 1.5e-49 201.1 124 78.2
Haze_27487 Corylus avellana HOM05D004048 ORTHO05D004859 2.2e-45 187.2 236 41.9
Haze_26957 Corylus avellana HOM05D005470 ORTHO05D006855 6.6e-42 175.6 217 46.1
MBI17_g16531_MAGBIO Magnolia biondii HOM05D004048 ORTHO05D004859 1.4e-39 167.9 104 76.9
CAN.G439.28 Capsicum annuum HOM05D004048 ORTHO05D004859 3.5e-35 153.3 88 80.7
FAN01G2460 Fragaria x ananassa HOM05D004048 ORTHO05D004859 3.5e-35 153.3 97 76.3
Lj6g0001313 Lotus japonicus HOM05D004048 ORTHO05D004859 1.3e-34 151.4 102 69.6
MBI12_g43904_MAGBIO Magnolia biondii HOM05D004048 ORTHO05D004859 1.3e-34 151.4 96 82.3
Ca_03489_v3 Cicer arietinum L. HOM05D004048 ORTHO05D004859 5.6e-33 146.0 110 70.9
Medtr4g037315 Medicago truncatula HOM05D004048 ORTHO05D004859 2.8e-32 143.7 96 70.8
Actinidia20163 Actinidia chinensis HOM05D004048 ORTHO05D004859 1.7e-29 134.4 189 50.3
Medtr4g037275 Medicago truncatula HOM05D004048 ORTHO05D004859 1.7e-29 134.4 76 82.9
AL4G45350 Arabidopsis lyrata HOM05D004048 ORTHO05D038698 7.1e-28 129.0 76 84.2
arahy.Tifrunner.gnm1.ann1.63JPLQ Arachis hypogaea HOM05D004048 ORTHO05D004859 1.2e-24 118.2 82 65.9
FAN10G2371 Fragaria x ananassa HOM05D004048 ORTHO05D038698 7.6e-22 109.0 83 69.9
ATR0751G274 Amborella trichopoda HOM05D004048 ORTHO05D004859 6.4e-21 105.9 73 64.4
Potri.002G164601 Populus trichocarpa HOM05D004048 ORTHO05D004859 4.6e-19 99.8 80 61.2
SGA_v2.0_scaffold4G02383 Striga asiatica HOM05D004048 ORTHO05D051375 7.8e-19 99.0 63 81.0
HanXRQChr15g0474641 Helianthus annuus HOM05D004048 ORTHO05D004859 2.3e-18 97.4 62 77.4
arahy.Tifrunner.gnm1.ann1.DMYH1R Arachis hypogaea HOM05D004048 ORTHO05D004859 3.3e-17 93.6 73 60.3
DCAR_025216 Daucus carota HOM05D003118 ORTHO05D003618 9.6e-17 92.0 78 69.2
arahy.Tifrunner.gnm1.ann1.GKUV9U Arachis hypogaea HOM05D004048 ORTHO05D004859 1.3e-08 65.1 48 70.8


User provided reference genes

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