Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G42130 Arabidopsis lyrata HOM05D004013 ORTHO05D004710 1.2e-277 959.1 477 100.0
AT3G59950 Arabidopsis thaliana HOM05D004013 ORTHO05D004710 9.5e-262 906.4 478 95.6
Sp5g03230 Schrenkiella parvula HOM05D004013 ORTHO05D004710 6.8e-244 847.0 477 89.1
Carub.0005s2667 Capsella rubella HOM05D004013 ORTHO05D004710 7.1e-233 810.4 464 88.1
CARHR170260 Cardamine hirsuta HOM05D004013 ORTHO05D004710 1.7e-218 762.7 422 90.5
BcaC07g40400 Brassica carinata HOM05D004013 ORTHO05D004710 9.3e-217 756.9 477 81.6
BraA09t40658Z Brassica rapa HOM05D004013 ORTHO05D004710 2.7e-216 755.4 477 82.0
A09p52290 Brassica napus HOM05D004013 ORTHO05D004710 4.1e-212 741.5 502 77.9
C04p32840 Brassica napus HOM05D004013 ORTHO05D004710 5.9e-211 737.6 479 79.5
BcaC02g10096 Brassica carinata HOM05D004013 ORTHO05D004710 1.3e-210 736.5 479 79.5
BolC4t24846H Brassica oleracea HOM05D004013 ORTHO05D004710 1.3e-210 736.5 479 79.5
BolC8t51099H Brassica oleracea HOM05D004013 ORTHO05D004710 1.0e-207 726.9 485 78.8
Thhalv10005940m.g Eutrema salsugineum HOM05D004013 ORTHO05D004710 1.1e-206 723.4 392 90.6
BcaB02g08204 Brassica carinata HOM05D004013 ORTHO05D004710 6.9e-204 714.1 392 89.8
Sp4g26220 Schrenkiella parvula HOM05D004013 ORTHO05D004710 7.7e-203 710.7 477 74.0
Aa31LG1G25800 Aethionema arabicum HOM05D004013 ORTHO05D004710 1.3e-202 709.9 486 74.1
AL4G43020 Arabidopsis lyrata HOM05D004013 ORTHO05D004710 1.7e-202 709.5 477 74.4
A04p01980 Brassica napus HOM05D004013 ORTHO05D004710 2.2e-202 709.1 480 77.5
BraA04t15923Z Brassica rapa HOM05D004013 ORTHO05D004710 4.2e-201 704.9 478 76.6
AT2G44140 Arabidopsis thaliana HOM05D004013 ORTHO05D004710 4.6e-200 701.4 477 73.8
BcaC07g40539 Brassica carinata HOM05D004013 ORTHO05D004710 1.7e-189 666.4 392 85.5
BcaB02g08917 Brassica carinata HOM05D004013 ORTHO05D004710 6.7e-183 644.4 483 69.2
CARHR139300 Cardamine hirsuta HOM05D004013 ORTHO05D004710 1.1e-180 637.1 432 72.7
BcaC02g12335 Brassica carinata HOM05D004013 ORTHO05D004710 9.4e-177 624.0 484 69.0
C04p05030 Brassica napus HOM05D004013 ORTHO05D004710 9.4e-177 624.0 484 69.0
BolC4t22136H Brassica oleracea HOM05D004013 ORTHO05D004710 9.4e-177 624.0 484 69.0
A05p04250 Brassica napus HOM05D004013 ORTHO05D004710 4.0e-175 618.6 484 68.2
BraA05t19410Z Brassica rapa HOM05D004013 ORTHO05D004710 8.8e-175 617.5 484 68.0
Carub.0004s2669 Capsella rubella HOM05D004013 ORTHO05D004710 5.4e-172 608.2 392 76.0
Thhalv10001432m.g Eutrema salsugineum HOM05D004013 ORTHO05D004710 2.0e-166 589.7 395 73.9
Thecc.01G234100 Theobroma cacao HOM05D004013 ORTHO05D004710 7.3e-161 571.2 487 58.7
CiPaw.10G057600 Carya illinoinensis HOM05D004013 ORTHO05D004710 1.6e-160 570.1 489 59.1
QL05p046231 Quercus lobata HOM05D004013 ORTHO05D004710 1.0e-159 567.4 501 57.3
Prupe.2G000200 Prunus persica HOM05D004013 ORTHO05D004710 8.9e-159 564.3 490 58.2
Atru.chr3.2025 Acer truncatum HOM05D004013 ORTHO05D004710 2.6e-158 562.8 488 60.0
Cpa.g.sc9.235 Carica papaya HOM05D004013 ORTHO05D004710 9.8e-158 560.8 405 67.4
Gorai.008G001300 Gossypium raimondii HOM05D004013 ORTHO05D004710 9.8e-158 560.8 494 59.7
GSVIVG01003913001 Vitis vinifera HOM05D004013 ORTHO05D004710 1.3e-157 560.5 495 59.4
Cfa000589 Carpinus fangiana HOM05D004013 ORTHO05D004710 2.9e-157 559.3 502 57.4
MD00G1055200 Malus domestica HOM05D004013 ORTHO05D004710 2.9e-157 559.3 490 57.6
Duzib147G1378 Durio zibethinus HOM05D004013 ORTHO05D004710 6.4e-157 558.1 490 59.0
Gohir.D12G001900 Gossypium hirsutum HOM05D004013 ORTHO05D004710 4.1e-156 555.4 494 58.9
Gohir.A12G002200 Gossypium hirsutum HOM05D004013 ORTHO05D004710 1.2e-155 553.9 494 58.9
Duzib264G0158 Durio zibethinus HOM05D004013 ORTHO05D004710 2.0e-155 553.1 489 59.3
MD07G1000400 Malus domestica HOM05D004013 ORTHO05D004710 5.9e-155 551.6 490 56.9
Dinv28066 Davidia involucrata HOM05D004013 ORTHO05D004710 7.8e-155 551.2 488 57.4
Ciclev10019906m.g Citrus clementina HOM05D004013 ORTHO05D004710 1.3e-154 550.4 488 57.6
Glyma.09G244800 Glycine max HOM05D004013 ORTHO05D004710 1.3e-154 550.4 498 56.6
Potri.017G000500 Populus trichocarpa HOM05D004013 ORTHO05D004710 1.7e-154 550.1 484 59.5
Phvul.008G048900 Phaseolus vulgaris HOM05D004013 ORTHO05D004710 2.3e-154 549.7 494 56.7
Lj1g0014615 Lotus japonicus HOM05D004013 ORTHO05D004710 9.5e-153 544.3 488 57.4
VMungo1383G0353 Vigna mungo HOM05D004013 ORTHO05D004710 3.6e-152 542.3 498 55.8
Eucgr.K03157 Eucalyptus grandis HOM05D004013 ORTHO05D004710 4.7e-152 542.0 490 58.0
Medtr7g081230 Medicago truncatula HOM05D004013 ORTHO05D004710 8.0e-152 541.2 489 56.6
Ca_08048_v3 Cicer arietinum L. HOM05D004013 ORTHO05D004710 1.8e-151 540.0 498 54.6
Ca_08054_v3 Cicer arietinum L. HOM05D004013 ORTHO05D004710 1.8e-151 540.0 498 54.6
Potri.007G147100 Populus trichocarpa HOM05D004013 ORTHO05D004710 1.2e-150 537.3 487 57.7
MELO3C008520.2 Cucumis melo HOM05D004013 ORTHO05D004710 2.0e-150 536.6 478 56.1
arahy.Tifrunner.gnm1.ann1.LVD0DC Arachis hypogaea HOM05D004013 ORTHO05D004710 2.6e-150 536.2 493 56.4
TAR365G0341 Trochodendron aralioides HOM05D004013 ORTHO05D004710 4.4e-150 535.4 492 56.3
TPR.G29111 Trifolium pratense HOM05D004013 ORTHO05D004710 7.5e-150 534.6 493 56.0
Glyma.18G248400 Glycine max HOM05D004013 ORTHO05D004710 1.3e-149 533.9 497 55.3
COL.COLO4_06916 Corchorus olitorius HOM05D004013 ORTHO05D004710 2.9e-149 532.7 499 56.9
Manes.01G009000 Manihot esculenta HOM05D004013 ORTHO05D004710 1.4e-148 530.4 398 64.8
arahy.Tifrunner.gnm1.ann1.M4STP7 Arachis hypogaea HOM05D004013 ORTHO05D004710 3.2e-148 529.3 488 55.3
TWI63G0479 Tripterygium wilfordii HOM05D004013 ORTHO05D004710 3.2e-148 529.3 491 55.2
CsaV3_2G011360 Cucumis sativus L. HOM05D004013 ORTHO05D004710 9.2e-148 527.7 478 55.4
THA.LOC104808419 Tarenaya hassleriana HOM05D004013 ORTHO05D004710 1.2e-147 527.3 312 80.4
CiPaw.09G068100 Carya illinoinensis HOM05D004013 ORTHO05D004710 2.0e-147 526.6 399 64.2
arahy.Tifrunner.gnm1.ann1.ERJ0Z2 Arachis hypogaea HOM05D004013 ORTHO05D004710 3.5e-147 525.8 504 55.0
TAR633G1686 Trochodendron aralioides HOM05D004013 ORTHO05D004710 4.6e-147 525.4 496 55.2
TWI15G0551 Tripterygium wilfordii HOM05D004013 ORTHO05D004710 7.8e-147 524.6 446 57.8
CSS0003826 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 1.7e-146 523.5 492 56.1
Sed0016347 Sechium edule HOM05D004013 ORTHO05D004710 1.7e-146 523.5 478 55.2
vmacro09116 Vaccinium macrocarpon HOM05D004013 ORTHO05D004710 2.3e-146 523.1 461 57.7
CSS0048139 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 5.0e-146 521.9 492 55.9
Hma1.2p1_0940F.1_g239620 Hydrangea macrophylla HOM05D004013 ORTHO05D004710 6.6e-146 521.5 491 55.8
Lalb_Chr01g0021691 Lupinus albus HOM05D004013 ORTHO05D004710 1.5e-145 520.4 459 57.1
Psat0s3112g0040 Pisum sativum HOM05D004013 ORTHO05D004710 2.1e-144 516.5 489 54.0
ECA232G0201 Erigeron canadensis HOM05D004013 ORTHO05D004710 3.6e-144 515.8 475 57.1
CANSAT78G0639 Cannabis sativa HOM05D004013 ORTHO05D004710 8.1e-144 514.6 444 56.5
PSO732G0206 Papaver somniferum HOM05D004013 ORTHO05D004710 2.3e-143 513.1 426 59.6
HanXRQChr08g0212421 Helianthus annuus HOM05D004013 ORTHO05D004710 3.1e-143 512.7 394 63.5
HanXRQChr12g0363401 Helianthus annuus HOM05D004013 ORTHO05D004710 2.0e-142 510.0 387 63.3
Lj3C865T7 Lonicera japonica HOM05D004013 ORTHO05D004710 2.6e-142 509.6 487 55.0
Nn1g09391 Nelumbo nucifera HOM05D004013 ORTHO05D004710 9.8e-142 507.7 441 59.2
PSO675G0050 Papaver somniferum HOM05D004013 ORTHO05D004710 1.3e-141 507.3 462 56.9
Lalb_Chr03g0040611 Lupinus albus HOM05D004013 ORTHO05D004710 2.9e-141 506.1 461 55.3
ECA233G0032 Erigeron canadensis HOM05D004013 ORTHO05D004710 5.4e-140 501.9 473 55.6
Lsat_1_v5_gn_8_45601 Lactuca sativa HOM05D004013 ORTHO05D004710 4.6e-139 498.8 478 54.6
DCAR_023584 Daucus carota HOM05D004013 ORTHO05D004710 3.0e-138 496.1 444 56.1
Nitab4.5_0001568g0070 Nicotiana tabacum HOM05D004013 ORTHO05D004710 5.1e-138 495.4 406 59.1
Nitab4.5_0005132g0050 Nicotiana tabacum HOM05D004013 ORTHO05D004710 6.6e-138 495.0 406 59.4
Ah.07g203370 Amaranthus hybridus HOM05D004013 ORTHO05D004710 3.3e-137 492.7 496 54.6
PGR142G2472 Punica granatum HOM05D004013 ORTHO05D004710 1.2e-136 490.7 445 56.9
Rhsim09G0091900 Rhododendron simsii HOM05D004013 ORTHO05D004710 1.6e-136 490.3 528 51.5
Hund22667 Selenicereus undatus HOM05D004013 ORTHO05D004710 2.1e-136 490.0 403 58.8
arahy.Tifrunner.gnm1.ann1.AL59ZJ Arachis hypogaea HOM05D004013 ORTHO05D004710 3.6e-136 489.2 489 53.2
MBI15_g08971_MAGBIO Magnolia biondii HOM05D004013 ORTHO05D004710 3.6e-136 489.2 415 59.3
CAN.G140.48 Capsicum annuum HOM05D004013 ORTHO05D004710 6.2e-136 488.4 443 56.4
Lj6A740G51 Lonicera japonica HOM05D004013 ORTHO05D004710 6.2e-136 488.4 494 53.4
MSTRG.23493 Avicennia marina HOM05D004013 ORTHO05D004710 1.4e-135 487.3 414 58.9
Oeu011024.1 Olea europaea HOM05D004013 ORTHO05D004710 1.4e-135 487.3 393 58.3
AUR62023683 Chenopodium quinoa HOM05D004013 ORTHO05D004710 2.3e-135 486.5 398 60.3
PGSC0003DMG400032144 Solanum tuberosum HOM05D004013 ORTHO05D004710 2.3e-135 486.5 444 56.1
ATR0706G248 Amborella trichopoda HOM05D004013 ORTHO05D004710 6.8e-135 485.0 499 51.7
SalBow7G0073 Salvia bowleyana HOM05D004013 ORTHO05D004710 6.8e-135 485.0 490 53.1
CDE06G1594 Ceratophyllum demersum HOM05D004013 ORTHO05D004710 3.4e-134 482.6 425 56.2
AUR62002510 Chenopodium quinoa HOM05D004013 ORTHO05D004710 5.8e-134 481.9 463 53.3
EL10Ac3g06192 Beta vulgaris HOM05D004013 ORTHO05D004710 7.6e-134 481.5 465 54.0
CDE04G0030 Ceratophyllum demersum HOM05D004013 ORTHO05D004710 1.7e-133 480.3 423 57.2
Migut.L00278 Erythranthe guttata HOM05D004013 ORTHO05D004710 1.7e-133 480.3 475 53.1
Migut.L00578 Erythranthe guttata HOM05D004013 ORTHO05D004710 2.2e-133 479.9 391 60.1
Sopen01g002230 Solanum pennellii HOM05D004013 ORTHO05D004710 2.2e-133 479.9 444 55.6
Solyc01g006230.3 Solanum lycopersicum HOM05D004013 ORTHO05D004710 4.9e-133 478.8 444 55.4
Os04g0682000 Oryza sativa ssp. japonica HOM05D004013 ORTHO05D004710 3.5e-131 472.6 489 50.9
SGA_v2.0_scaffold37G14795 Striga asiatica HOM05D004013 ORTHO05D004710 1.7e-130 470.3 396 58.6
Ah.13g073110 Amaranthus hybridus HOM05D004013 ORTHO05D004710 3.9e-130 469.2 358 63.1
Haze_06261 Corylus avellana HOM05D004013 ORTHO05D004710 1.9e-129 466.8 742 39.4
FAN24G3388 Fragaria x ananassa HOM05D004013 ORTHO05D004710 1.9e-129 466.8 416 56.5
FAN20G2928 Fragaria x ananassa HOM05D004013 ORTHO05D004710 4.3e-129 465.7 417 57.3
FvH4_2g06800 Fragaria vesca HOM05D004013 ORTHO05D004710 5.6e-129 465.3 417 56.6
FAN15G0687 Fragaria x ananassa HOM05D004013 ORTHO05D004710 6.2e-128 461.8 372 60.8
FAN27G1923 Fragaria x ananassa HOM05D004013 ORTHO05D004710 1.4e-127 460.7 419 56.3
DCAR_026793 Daucus carota HOM05D004013 ORTHO05D004710 5.2e-127 458.8 406 57.4
unitig_748.g8760 Utricularia gibba HOM05D004013 ORTHO05D004710 8.9e-127 458.0 405 55.6
SHI01175 Sapria himalayana HOM05D004013 ORTHO05D004710 1.2e-126 457.6 494 51.6
SGA_v2.0_scaffold3G01797 Striga asiatica HOM05D004013 ORTHO05D004710 1.5e-126 457.2 480 51.7
Zm00001eb065800 Zea mays HOM05D004013 ORTHO05D004710 2.6e-126 456.4 392 56.4
CSS0004368 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 4.4e-126 455.7 450 54.2
RcHm_v2.0_Chr6g0259021 Rosa chinensis HOM05D004013 ORTHO05D004710 2.2e-125 453.4 413 56.7
Os03g0391000 Oryza sativa ssp. japonica HOM05D004013 ORTHO05D004710 7.1e-124 448.4 458 50.9
SEGI_37986 Sequoiadendron giganteum HOM05D004013 ORTHO05D004710 2.7e-123 446.4 452 52.0
vmacro10687 Vaccinium macrocarpon HOM05D004013 ORTHO05D004710 1.3e-122 444.1 550 46.7
Pp3c11_22820 Physcomitrium patens HOM05D004013 ORTHO05D004710 8.7e-122 441.4 390 54.9
HPP92_020809 Vanilla planifolia HOM05D004013 ORTHO05D004710 1.1e-119 434.5 493 47.9
Zm00001eb433950 Zea mays HOM05D004013 ORTHO05D004710 1.4e-119 434.1 379 56.5
Peaxi162Scf00441g00621 Petunia axillaris HOM05D004013 ORTHO05D004710 7.1e-116 421.8 394 53.6
Oeu034368.2 Olea europaea HOM05D004013 ORTHO05D004710 1.0e-114 417.9 588 39.8
Dinv18636 Davidia involucrata HOM05D004013 ORTHO05D004710 1.3e-114 417.5 317 63.1
Pp3c7_280 Physcomitrium patens HOM05D004013 ORTHO05D004710 1.1e-113 414.5 396 50.8
Sed0011939 Sechium edule HOM05D004013 ORTHO05D004710 1.5e-113 414.1 365 57.0
ClCG06G010000 Citrullus lanatus HOM05D004013 ORTHO05D004710 4.3e-113 412.5 363 57.0
Mapoly0153s0038 Marchantia polymorpha HOM05D004013 ORTHO05D004710 9.6e-113 411.4 415 49.6
Sc08g0007990 Simmondsia chinensis HOM05D004013 ORTHO05D004710 3.0e-106 389.8 377 55.2
SMO145G0104 Selaginella moellendorffii HOM05D004013 ORTHO05D004710 1.2e-102 377.9 376 52.1
C08p34940 Brassica napus HOM05D004013 ORTHO05D004710 8.4e-101 371.7 208 87.0
Oeu053147.1 Olea europaea HOM05D004013 ORTHO05D004710 1.8e-79 300.8 278 51.8
Actinidia29462 Actinidia chinensis HOM05D004013 ORTHO05D004710 1.2e-75 288.1 218 62.8
Zm00001eb419970 Zea mays HOM05D004013 ORTHO05D004710 9.7e-73 278.5 248 56.0
CBR_g21952 Chara braunii HOM05D004013 ORTHO05D004710 2.9e-61 240.4 311 43.4
C08p34950 Brassica napus HOM05D004013 ORTHO05D004710 1.5e-60 238.0 213 62.9
Actinidia29461 Actinidia chinensis HOM05D004013 ORTHO05D004710 2.1e-59 234.2 176 64.2
Sabra17G0005400 Salix brachista HOM05D004013 ORTHO05D004710 3.6e-59 233.4 279 48.7
Zm00001eb264230 Zea mays HOM05D004013 ORTHO05D004710 3.4e-57 226.9 238 49.2
Hma1.2p1_1910F.1_g307280 Hydrangea macrophylla HOM05D004013 ORTHO05D004710 8.3e-56 222.2 279 44.4
PRCOL_00001711 Prasinoderma coloniale HOM05D004013 ORTHO05D004710 5.4e-47 193.0 462 32.7
Oeu037862.1 Olea europaea HOM05D004013 ORTHO05D004710 2.0e-46 191.0 295 37.3
Actinidia36638 Actinidia chinensis HOM05D004013 ORTHO05D004710 3.3e-44 183.7 413 35.1
THA.LOC104804900 Tarenaya hassleriana HOM05D004013 ORTHO05D004710 1.2e-41 175.3 197 52.8
unitig_32.g11897 Utricularia gibba HOM05D004013 ORTHO05D004710 3.5e-38 163.7 307 37.8
MCO13G568 Micromonas commoda HOM05D004013 ORTHO05D004710 8.3e-32 142.5 289 32.2
Peaxi162Scf00271g00518 Petunia axillaris HOM05D004013 ORTHO05D004710 1.4e-26 125.2 117 52.1
ClCG06G009970 Citrullus lanatus HOM05D004013 ORTHO05D004710 2.9e-24 117.5 81 60.5
Cre12.g510100 Chlamydomonas reinhardtii HOM05D004013 ORTHO05D004710 4.9e-24 116.7 629 21.5
Actinidia03474 Actinidia chinensis HOM05D004013 ORTHO05D004710 4.6e-22 110.2 105 53.3
arahy.Tifrunner.gnm1.ann1.MVA4LE Arachis hypogaea HOM05D004013 ORTHO05D004710 1.0e-21 109.0 121 47.9
arahy.Tifrunner.gnm1.ann1.AC7664 Arachis hypogaea HOM05D004013 ORTHO05D004710 2.1e-14 84.7 97 45.4
Cfa022146 Carpinus fangiana HOM05D004013 ORTHO05D124891 3.5e-14 84.0 335 27.8
ATR0807G232 Amborella trichopoda HOM05D004013 ORTHO05D004710 1.5e-12 78.6 84 48.8
Actinidia03477 Actinidia chinensis HOM05D004013 ORTHO05D004710 1.8e-10 71.6 66 56.1
ATR0807G053 Amborella trichopoda HOM05D004013 ORTHO05D004710 1.7e-08 65.1 47 63.8


User provided reference genes

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