Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G40630 Arabidopsis lyrata HOM05D005636 ORTHO05D006912 1.4e-195 686.0 339 100.0
Carub.0005s2561 Capsella rubella HOM05D005636 ORTHO05D006912 1.6e-183 646.0 340 94.1
AT3G58830 Arabidopsis thaliana HOM05D005636 ORTHO05D006912 1.4e-182 642.9 344 93.3
CARHR169230 Cardamine hirsuta HOM05D005636 ORTHO05D006912 2.3e-177 625.5 340 92.1
Thhalv10006084m.g Eutrema salsugineum HOM05D005636 ORTHO05D006912 1.1e-174 616.7 340 90.3
Sp5g04030 Schrenkiella parvula HOM05D005636 ORTHO05D006912 1.0e-172 610.1 341 90.0
BraA07t30084Z Brassica rapa HOM05D005636 ORTHO05D006912 6.9e-166 587.4 342 88.9
C06p25760 Brassica napus HOM05D005636 ORTHO05D006912 2.0e-165 585.9 342 88.9
BolC6t37738H Brassica oleracea HOM05D005636 ORTHO05D006912 2.0e-165 585.9 342 88.9
A07p24370 Brassica napus HOM05D005636 ORTHO05D006912 2.9e-164 582.0 341 88.0
BcaB02g07496 Brassica carinata HOM05D005636 ORTHO05D006912 2.7e-162 575.5 344 87.8
BcaC08g44945 Brassica carinata HOM05D005636 ORTHO05D006912 2.7e-154 548.9 342 85.1
Aa31LG10G13390 Aethionema arabicum HOM05D005636 ORTHO05D006912 3.8e-148 528.5 340 79.7
THA.LOC104802275 Tarenaya hassleriana HOM05D005636 ORTHO05D006912 2.0e-133 479.6 353 69.4
BcaC08g44944 Brassica carinata HOM05D005636 ORTHO05D006912 8.0e-122 441.0 226 95.1
THA.LOC104803221 Tarenaya hassleriana HOM05D005636 ORTHO05D006912 8.0e-122 441.0 340 67.1
Cpa.g.sc50.79 Carica papaya HOM05D005636 ORTHO05D006912 2.0e-112 409.8 338 63.3
Thecc.01G161100 Theobroma cacao HOM05D005636 ORTHO05D006912 1.4e-105 387.1 347 58.8
Ciclev10031950m.g Citrus clementina HOM05D005636 ORTHO05D006912 4.9e-103 378.6 345 58.6
Gohir.A05G378700 Gossypium hirsutum HOM05D005636 ORTHO05D006912 2.4e-102 376.3 340 60.6
CSS0038062 Camellia sinensis var. sinensis HOM05D005636 ORTHO05D006912 7.1e-102 374.8 346 56.9
COL.COLO4_33742 Corchorus olitorius HOM05D005636 ORTHO05D006912 9.2e-102 374.4 355 57.2
Gorai.012G041700 Gossypium raimondii HOM05D005636 ORTHO05D006912 1.2e-101 374.0 340 60.3
Gohir.D04G036900 Gossypium hirsutum HOM05D005636 ORTHO05D006912 1.6e-101 373.6 340 60.0
Duzib187G1993 Durio zibethinus HOM05D005636 ORTHO05D006912 2.1e-101 373.2 350 58.3
Sabra02G0049100 Salix brachista HOM05D005636 ORTHO05D006912 1.0e-100 370.9 232 75.0
Manes.02G084000 Manihot esculenta HOM05D005636 ORTHO05D006912 3.9e-100 369.0 346 55.2
Potri.002G060600 Populus trichocarpa HOM05D005636 ORTHO05D006912 8.7e-100 367.9 224 76.8
CsaV3_6G038020 Cucumis sativus L. HOM05D005636 ORTHO05D006912 8.1e-98 361.3 256 64.8
Dinv31558 Davidia involucrata HOM05D005636 ORTHO05D006912 8.1e-98 361.3 344 55.5
Potri.005G201100 Populus trichocarpa HOM05D005636 ORTHO05D006912 2.4e-97 359.8 226 73.5
HanXRQChr12g0369761 Helianthus annuus HOM05D005636 ORTHO05D006912 3.1e-97 359.4 299 60.2
Sabra05G0153000 Salix brachista HOM05D005636 ORTHO05D006912 4.0e-97 359.0 226 73.0
MELO3C014464.2 Cucumis melo HOM05D005636 ORTHO05D006912 6.9e-97 358.2 256 63.7
Glyma.20G056400 Glycine max HOM05D005636 ORTHO05D006912 9.0e-97 357.8 274 63.9
MD17G1140200 Malus domestica HOM05D005636 ORTHO05D006912 9.0e-97 357.8 343 55.4
Lj6g0012077 Lotus japonicus HOM05D005636 ORTHO05D006912 1.5e-96 357.1 259 65.6
Oeu040028.1 Olea europaea HOM05D005636 ORTHO05D006912 2.6e-96 356.3 336 56.2
Actinidia11200 Actinidia chinensis HOM05D005636 ORTHO05D006912 4.4e-96 355.5 345 56.5
Eucgr.K01200 Eucalyptus grandis HOM05D005636 ORTHO05D006912 4.4e-96 355.5 346 55.5
FAN09G4115 Fragaria x ananassa HOM05D005636 ORTHO05D006912 7.6e-96 354.8 332 58.7
Medtr1g046360 Medicago truncatula HOM05D005636 ORTHO05D006912 9.9e-96 354.4 301 59.5
FAN14G2746 Fragaria x ananassa HOM05D005636 ORTHO05D006912 1.3e-95 354.0 332 57.2
Atru.chr1.3606 Acer truncatum HOM05D005636 ORTHO05D006912 1.7e-95 353.6 349 54.7
Cfa022913 Carpinus fangiana HOM05D005636 ORTHO05D006912 1.7e-95 353.6 214 78.5
FvH4_6g38130 Fragaria vesca HOM05D005636 ORTHO05D006912 1.7e-95 353.6 335 56.4
Hma1.2p1_0722F.1_g208750 Hydrangea macrophylla HOM05D005636 ORTHO05D006912 2.9e-95 352.8 344 56.4
FAN05G0596 Fragaria x ananassa HOM05D005636 ORTHO05D006912 4.9e-95 352.1 345 55.4
Medtr3g079530 Medicago truncatula HOM05D005636 ORTHO05D006912 4.9e-95 352.1 271 64.2
MD09G1152800 Malus domestica HOM05D005636 ORTHO05D006912 6.4e-95 351.7 333 57.4
Lsat_1_v5_gn_8_32020 Lactuca sativa HOM05D005636 ORTHO05D006912 8.4e-95 351.3 222 73.4
RcHm_v2.0_Chr2g0151351 Rosa chinensis HOM05D005636 ORTHO05D006912 8.4e-95 351.3 350 55.4
Phvul.005G057920 Phaseolus vulgaris HOM05D005636 ORTHO05D006912 1.1e-94 350.9 234 69.7
Phvul.002G231100 Phaseolus vulgaris HOM05D005636 ORTHO05D006912 1.9e-94 350.1 234 68.4
ECA233G1750 Erigeron canadensis HOM05D005636 ORTHO05D006912 7.1e-94 348.2 220 74.1
Sed0000049 Sechium edule HOM05D005636 ORTHO05D006912 9.3e-94 347.8 331 53.8
Oeu020065.1 Olea europaea HOM05D005636 ORTHO05D006912 2.1e-93 346.7 337 57.0
TPR.G37891 Trifolium pratense HOM05D005636 ORTHO05D006912 2.7e-93 346.3 268 62.3
Ca_16256_v3 Cicer arietinum L. HOM05D005636 ORTHO05D006912 4.6e-93 345.5 347 53.6
Lalb_Chr17g0335961 Lupinus albus HOM05D005636 ORTHO05D006912 4.6e-93 345.5 258 64.7
SalBow7G3906 Salvia bowleyana HOM05D005636 ORTHO05D006912 4.6e-93 345.5 333 55.9
Cc05_g09330 Coffea canephora HOM05D005636 ORTHO05D006912 6.0e-93 345.1 330 55.8
GSVIVG01000791001 Vitis vinifera HOM05D005636 ORTHO05D006912 1.3e-92 344.0 226 71.2
Prupe.3G171400 Prunus persica HOM05D005636 ORTHO05D006912 2.3e-92 343.2 287 60.6
Lalb_Chr04g0257641 Lupinus albus HOM05D005636 ORTHO05D006912 3.0e-92 342.8 222 71.2
Psat5g112320 Pisum sativum HOM05D005636 ORTHO05D006912 3.0e-92 342.8 234 69.2
CAN.G585.52 Capsicum annuum HOM05D005636 ORTHO05D006912 3.9e-92 342.4 247 65.6
PGR142G4384 Punica granatum HOM05D005636 ORTHO05D006912 6.6e-92 341.7 360 52.2
PGSC0003DMG400017343 Solanum tuberosum HOM05D005636 ORTHO05D006912 1.5e-91 340.5 263 63.5
Nitab4.5_0001675g0040 Nicotiana tabacum HOM05D005636 ORTHO05D006912 5.6e-91 338.6 336 55.1
Sopen07g029330 Solanum pennellii HOM05D005636 ORTHO05D006912 2.1e-90 336.7 224 69.6
ClCG09G022370 Citrullus lanatus HOM05D005636 ORTHO05D006912 3.6e-90 335.9 277 58.5
CiPaw.03G189200 Carya illinoinensis HOM05D005636 ORTHO05D006912 4.8e-90 335.5 220 73.2
Nitab4.5_0005557g0010 Nicotiana tabacum HOM05D005636 ORTHO05D006912 4.8e-90 335.5 219 70.3
Solyc07g055980.3 Solanum lycopersicum HOM05D005636 ORTHO05D006912 6.2e-90 335.1 224 69.2
Rhsim06G0118100 Rhododendron simsii HOM05D005636 ORTHO05D006912 8.1e-90 334.7 383 49.6
TAR627G0895 Trochodendron aralioides HOM05D005636 ORTHO05D006912 1.1e-89 334.3 228 68.0
SGA_v2.0_scaffold130G34360 Striga asiatica HOM05D005636 ORTHO05D006912 1.4e-89 334.0 224 68.3
HanXRQChr13g0387431 Helianthus annuus HOM05D005636 ORTHO05D006912 5.3e-89 332.0 258 62.0
Migut.M00513 Erythranthe guttata HOM05D005636 ORTHO05D006912 1.2e-88 330.9 320 54.7
PGSC0003DMG400007795 Solanum tuberosum HOM05D005636 ORTHO05D006912 1.5e-88 330.5 262 60.7
Peaxi162Scf00807g00219 Petunia axillaris HOM05D005636 ORTHO05D006912 2.6e-88 329.7 314 53.5
Solyc12g011020.2 Solanum lycopersicum HOM05D005636 ORTHO05D006912 3.4e-88 329.3 224 67.4
Sopen12g006380 Solanum pennellii HOM05D005636 ORTHO05D006912 4.5e-88 328.9 262 60.3
Nn6g34386 Nelumbo nucifera HOM05D005636 ORTHO05D006912 6.4e-87 325.1 303 52.8
arahy.Tifrunner.gnm1.ann1.59ND6F Arachis hypogaea HOM05D005636 ORTHO05D006912 1.4e-86 323.9 310 52.9
CAN.G164.23 Capsicum annuum HOM05D005636 ORTHO05D006912 1.4e-86 323.9 224 65.2
Aqoxy1G01878 Aquilegia oxysepala HOM05D005636 ORTHO05D006912 3.2e-86 322.8 330 50.3
QL08p044016 Quercus lobata HOM05D005636 ORTHO05D006912 3.2e-86 322.8 295 59.3
VMungo0540G1884 Vigna mungo HOM05D005636 ORTHO05D006912 4.2e-86 322.4 209 71.8
Peaxi162Scf00111g00031 Petunia axillaris HOM05D005636 ORTHO05D006912 7.9e-85 318.2 235 66.8
SalBow7G1748 Salvia bowleyana HOM05D005636 ORTHO05D006912 1.0e-84 317.8 220 67.3
PSO675G1578 Papaver somniferum HOM05D005636 ORTHO05D006912 1.8e-84 317.0 226 61.9
Nitab4.5_0006934g0010 Nicotiana tabacum HOM05D005636 ORTHO05D006912 3.9e-84 315.8 329 51.7
VMungo0540G1461 Vigna mungo HOM05D005636 ORTHO05D006912 1.9e-83 313.5 302 55.0
MSTRG.6754 Avicennia marina HOM05D005636 ORTHO05D006912 3.3e-83 312.8 305 55.1
PSO541G3223 Papaver somniferum HOM05D005636 ORTHO05D006912 3.3e-83 312.8 226 61.1
TWI59G0166 Tripterygium wilfordii HOM05D005636 ORTHO05D006912 5.3e-81 305.4 285 54.7
vmacro12452 Vaccinium macrocarpon HOM05D005636 ORTHO05D006912 3.4e-80 302.8 287 55.1
Hma1.2p1_0888F.1_g232810 Hydrangea macrophylla HOM05D005636 ORTHO05D006912 8.4e-79 298.1 307 54.7
unitig_0.g2024 Utricularia gibba HOM05D005636 ORTHO05D006912 2.5e-78 296.6 291 50.9
ATR0763G116 Amborella trichopoda HOM05D005636 ORTHO05D006912 7.4e-75 285.0 216 58.8
Nitab4.5_0000446g0070 Nicotiana tabacum HOM05D005636 ORTHO05D006912 1.6e-74 283.9 329 48.0
EL10Ac8g19235 Beta vulgaris HOM05D005636 ORTHO05D006912 2.8e-74 283.1 236 56.8
CAN.G732.7 Capsicum annuum HOM05D005636 ORTHO05D006912 1.1e-73 281.2 198 67.2
CDE08G0457 Ceratophyllum demersum HOM05D005636 ORTHO05D006912 2.4e-73 280.0 213 60.6
Sc14g0000770 Simmondsia chinensis HOM05D005636 ORTHO05D006912 4.0e-73 279.3 215 59.1
SEGI_36348 Sequoiadendron giganteum HOM05D005636 ORTHO05D006912 1.2e-72 277.7 234 58.1
arahy.Tifrunner.gnm1.ann1.LGDT7B Arachis hypogaea HOM05D005636 ORTHO05D006912 3.8e-71 272.7 165 76.4
AUR62033992 Chenopodium quinoa HOM05D005636 ORTHO05D006912 1.9e-70 270.4 228 55.3
SGA_v2.0_scaffold70G23671 Striga asiatica HOM05D005636 ORTHO05D006912 1.6e-69 267.3 360 43.6
AUR62027489 Chenopodium quinoa HOM05D005636 ORTHO05D006912 2.1e-69 266.9 228 55.3
Os01g0796500 Oryza sativa ssp. japonica HOM05D005636 ORTHO05D006912 6.0e-69 265.4 221 55.2
Ah.04g158730 Amaranthus hybridus HOM05D005636 ORTHO05D006912 3.9e-68 262.7 215 55.3
AagrBONN_evm.TU.Sc2ySwM_228.4819 Anthoceros agrestis HOM05D005636 ORTHO05D006912 2.8e-66 256.5 223 53.4
Haze_13492 Corylus avellana HOM05D005636 ORTHO05D006912 1.4e-65 254.2 228 59.6
Pp3c4_17380 Physcomitrium patens HOM05D005636 ORTHO05D006912 4.5e-64 249.2 231 50.2
SMO367G0867 Selaginella moellendorffii HOM05D005636 ORTHO05D006912 3.8e-63 246.1 216 55.1
MSTRG.14295 Avicennia marina HOM05D005636 ORTHO05D006912 1.6e-61 240.7 151 68.9
Mapoly0095s0041 Marchantia polymorpha HOM05D005636 ORTHO05D006912 2.1e-61 240.4 224 51.8
HPP92_010206 Vanilla planifolia HOM05D002349 ORTHO05D002464 4.6e-61 239.2 187 61.0
Actinidia32519 Actinidia chinensis HOM05D005636 ORTHO05D006912 1.1e-57 228.0 246 52.8
CANSAT64G2722 Cannabis sativa HOM05D005636 ORTHO05D006912 4.1e-57 226.1 155 71.0
CBR_g66789 Chara braunii HOM05D005636 ORTHO05D006912 5.7e-51 205.7 182 52.7
Lj1A625T29 Lonicera japonica HOM05D005636 ORTHO05D006912 9.7e-51 204.9 232 49.6
Cre04.g219900 Chlamydomonas reinhardtii HOM05D005636 ORTHO05D006912 4.1e-49 199.5 204 47.5
DCAR_009796 Daucus carota HOM05D005636 ORTHO05D006912 1.1e-38 164.9 334 33.8
MCO16G670 Micromonas commoda HOM05D005636 ORTHO05D006912 1.5e-35 154.5 164 44.5
PRCOL_00003225 Prasinoderma coloniale HOM05D005636 ORTHO05D006912 2.0e-35 154.1 237 38.4
RcHm_v2.0_Chr2g0151251 Rosa chinensis HOM05D005636 ORTHO05D006912 1.7e-34 151.0 99 73.7
AagrBONN_evm.TU.Sc2ySwM_344.2384 Anthoceros agrestis HOM05D005636 ORTHO05D006912 2.9e-31 140.2 119 52.9
Zm00001eb150880 Zea mays HOM05D005636 ORTHO05D006912 1.7e-26 124.4 112 49.1
CAN.G44.13 Capsicum annuum HOM05D005636 ORTHO05D006912 5.5e-22 109.4 68 76.5
AagrBONN_evm.TU.Sc2ySwM_344.2381 Anthoceros agrestis HOM05D005636 ORTHO05D006912 4.7e-21 106.3 82 57.3
A04p02350 Brassica napus HOM05D005636 ORTHO05D006912 3.7e-18 96.7 58 89.7
CAN.G1530.4 Capsicum annuum HOM05D005636 ORTHO05D017742 5.4e-17 92.8 58 74.1
VMungo0720G3119 Vigna mungo HOM05D000196 ORTHO05D001288 3.5e-08 63.5 38 78.9
Cfa023890 Carpinus fangiana HOM05D005636 ORTHO05D123467 8.6e-07 58.9 72 43.1


User provided reference genes

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