Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G39610 Arabidopsis lyrata HOM05D010123 ORTHO05D012290 3.0e-143 511.9 273 100.0
AT3G57960 Arabidopsis thaliana HOM05D010123 ORTHO05D012290 4.8e-85 318.5 221 76.0
Carub.0005s2480 Capsella rubella HOM05D010123 ORTHO05D012290 8.9e-71 271.2 234 62.4
BcaB02g08286 Brassica carinata HOM05D010123 ORTHO05D012290 1.7e-42 177.2 239 43.5
BcaC02g09975 Brassica carinata HOM05D010123 ORTHO05D012290 1.2e-38 164.5 241 39.4
BcaC02g09978 Brassica carinata HOM05D010123 ORTHO05D012290 1.2e-38 164.5 241 39.4
C04p34410 Brassica napus HOM05D010123 ORTHO05D012290 1.2e-38 164.5 241 39.4
BolC4t25003H Brassica oleracea HOM05D010123 ORTHO05D012290 1.2e-38 164.5 241 39.4
A07p23750 Brassica napus HOM05D010123 ORTHO05D012290 9.9e-38 161.4 225 40.9
C06p24980 Brassica napus HOM05D010123 ORTHO05D012290 2.2e-37 160.2 216 42.6
BolC6t37650H Brassica oleracea HOM05D010123 ORTHO05D012290 2.2e-37 160.2 216 42.6
BraA04t16006Z Brassica rapa HOM05D010123 ORTHO05D012290 2.1e-35 153.7 218 41.7
BcaB02g07564 Brassica carinata HOM05D010123 ORTHO05D012290 1.7e-34 150.6 204 41.7
BcaC08g44881 Brassica carinata HOM05D010123 ORTHO05D012290 3.0e-34 149.8 212 41.0
A04p02820 Brassica napus HOM05D010123 ORTHO05D012290 1.3e-32 144.4 191 40.3
Aa31LG10G12670 Aethionema arabicum HOM05D010123 ORTHO05D012290 1.9e-28 130.6 233 39.1
Aa31LG10G12660 Aethionema arabicum HOM05D010123 ORTHO05D012290 1.6e-27 127.5 232 37.1
BcaC08g44882 Brassica carinata HOM05D010123 ORTHO05D012290 2.7e-27 126.7 215 36.3
Sp5g04760 Schrenkiella parvula HOM05D010123 ORTHO05D012290 1.4e-23 114.4 254 33.5
Thhalv10006494m.g Eutrema salsugineum HOM05D010123 ORTHO05D012290 1.2e-22 111.3 142 45.1
Carub.0005s2481 Capsella rubella HOM05D011318 ORTHO05D013413 1.9e-20 104.0 314 29.9
Sp5g04750 Schrenkiella parvula HOM05D011318 ORTHO05D013413 3.2e-20 103.2 288 30.2
THA.LOC104824469 Tarenaya hassleriana HOM05D011318 ORTHO05D013413 2.7e-19 100.1 189 31.2
Thhalv10006402m.g Eutrema salsugineum HOM05D011318 ORTHO05D013413 3.9e-18 96.3 213 30.0
BcaC07g40170 Brassica carinata HOM05D011318 ORTHO05D013413 1.1e-17 94.7 225 32.0
BcaC07g40167 Brassica carinata HOM05D011318 ORTHO05D013413 2.1e-16 90.5 270 30.0
C08p33540 Brassica napus HOM05D011318 ORTHO05D013413 6.2e-16 89.0 318 27.4
AT3G57970 Arabidopsis thaliana HOM05D011318 ORTHO05D013413 5.8e-14 82.4 247 28.7
BolC8t50949H Brassica oleracea HOM05D011318 ORTHO05D013413 2.2e-13 80.5 324 26.5
AL5G39620 Arabidopsis lyrata HOM05D011318 ORTHO05D013413 1.9e-12 77.4 117 36.8
BraA09t40526Z Brassica rapa HOM05D011318 ORTHO05D013413 4.2e-12 76.3 324 25.3
Aa31LG10G12680 Aethionema arabicum HOM05D011318 ORTHO05D013413 7.1e-12 75.5 195 26.7
A09p49470 Brassica napus HOM05D008477 ORTHO05D024345 7.1e-12 75.5 230 31.3
BraA09t40400Z Brassica rapa HOM05D008477 ORTHO05D024345 7.1e-12 75.5 230 31.3
A09p50790 Brassica napus HOM05D011318 ORTHO05D013413 1.6e-11 74.3 324 25.3
BcaNung05747 Brassica carinata HOM05D011318 ORTHO05D013413 3.0e-10 70.1 88 43.2
BcaNung05749 Brassica carinata HOM05D011318 ORTHO05D013413 3.0e-10 70.1 88 43.2
BraA07t30028Z Brassica rapa HOM05D010123 ORTHO05D012290 3.9e-10 69.7 100 45.0
C08p31850 Brassica napus HOM05D008477 ORTHO05D024345 6.7e-10 68.9 230 30.0
BolC6t37534H Brassica oleracea HOM05D008477 ORTHO05D021917 8.7e-10 68.6 134 35.8
BolC8t50804H Brassica oleracea HOM05D008477 ORTHO05D024345 8.7e-10 68.6 230 30.0
BcaC08g44792 Brassica carinata HOM05D008477 ORTHO05D021917 1.1e-09 68.2 138 34.8
C06p23620 Brassica napus HOM05D008477 ORTHO05D021917 1.1e-09 68.2 159 34.0
A07p22990 Brassica napus HOM05D008477 ORTHO05D021917 3.3e-09 66.6 198 30.8
CARHR168270 Cardamine hirsuta HOM05D010123 ORTHO05D012290 3.3e-09 66.6 52 57.7
BraA07t29962Z Brassica rapa HOM05D008477 ORTHO05D021917 5.7e-09 65.9 134 35.1
BcaC07g39968 Brassica carinata HOM05D008477 ORTHO05D024345 1.6e-08 64.3 193 31.6
BcaC08g44793 Brassica carinata HOM05D008477 ORTHO05D021917 2.8e-08 63.5 61 49.2
AL3G23790 Arabidopsis lyrata HOM05D001227 ORTHO05D001082 1.4e-07 61.2 198 23.7
C09p64080 Brassica napus HOM05D001227 ORTHO05D001082 1.8e-07 60.8 125 33.6
CARHR206400 Cardamine hirsuta HOM05D001227 ORTHO05D001082 4.1e-07 59.7 185 23.2
BolC3t13177H Brassica oleracea HOM05D001227 ORTHO05D001082 6.9e-07 58.9 125 33.6
BraA03t09915Z Brassica rapa HOM05D001227 ORTHO05D001082 6.9e-07 58.9 124 33.9
Thhalv10014235m.g Eutrema salsugineum HOM05D001227 ORTHO05D001082 6.9e-07 58.9 193 22.3
AT3G12140 Arabidopsis thaliana HOM05D001227 ORTHO05D001082 9.0e-07 58.5 198 23.7
A10p25170 Brassica napus HOM05D001227 ORTHO05D001082 9.0e-07 58.5 125 33.6
BraA10t44579Z Brassica rapa HOM05D001227 ORTHO05D001082 9.0e-07 58.5 125 33.6
Carub.0006s0567 Capsella rubella HOM05D001227 ORTHO05D001082 9.0e-07 58.5 203 20.7
BcaC01g04063 Brassica carinata HOM05D001227 ORTHO05D001082 1.2e-06 58.2 199 22.6
BolC3t16816H Brassica oleracea HOM05D006205 ORTHO05D007703 1.2e-06 58.2 199 22.6
BcaB04g18695 Brassica carinata HOM05D001227 ORTHO05D001082 1.5e-06 57.8 199 22.6
BolC9t59245H Brassica oleracea HOM05D001227 ORTHO05D001082 1.5e-06 57.8 125 32.8
Carub.0003s1149 Capsella rubella HOM05D001227 ORTHO05D001082 1.5e-06 57.8 198 23.2
CARHR086710 Cardamine hirsuta HOM05D001227 ORTHO05D001082 1.5e-06 57.8 198 22.7
CiPaw.09G031200 Carya illinoinensis HOM05D001227 ORTHO05D001082 2.0e-06 57.4 72 34.7
Sp3g10370 Schrenkiella parvula HOM05D001227 ORTHO05D001082 2.0e-06 57.4 202 23.3
Sed0015711 Sechium edule HOM05D001227 ORTHO05D001082 2.0e-06 57.4 67 41.8
THA.LOC104804890 Tarenaya hassleriana HOM05D011318 ORTHO05D013413 2.6e-06 57.0 306 21.2
Eucgr.B03648 Eucalyptus grandis HOM05D001227 ORTHO05D001082 3.4e-06 56.6 70 40.0
Thhalv10013727m.g Eutrema salsugineum HOM05D001227 ORTHO05D001082 3.4e-06 56.6 122 32.8
AL6G23610 Arabidopsis lyrata HOM05D001227 ORTHO05D001082 4.5e-06 56.2 134 32.1
AT5G13020 Arabidopsis thaliana HOM05D001227 ORTHO05D001082 4.5e-06 56.2 128 32.0
CARHR200440 Cardamine hirsuta HOM05D001227 ORTHO05D001082 5.9e-06 55.8 129 31.8
Thhalv10020983m.g Eutrema salsugineum HOM05D001227 ORTHO05D001082 5.9e-06 55.8 197 21.8
Os08g0328300 Oryza sativa ssp. japonica HOM05D001227 ORTHO05D001082 5.9e-06 55.8 73 39.7
Sp6g36070 Schrenkiella parvula HOM05D001227 ORTHO05D001082 5.9e-06 55.8 193 22.3
BcaC02g09977 Brassica carinata HOM05D010123 ORTHO05D012290 7.7e-06 55.5 66 33.3
BcaC06g32393 Brassica carinata HOM05D001227 ORTHO05D001082 7.7e-06 55.5 192 23.4
BcaNung01856 Brassica carinata HOM05D001227 ORTHO05D001082 7.7e-06 55.5 107 32.7
C09p69980 Brassica napus HOM05D001227 ORTHO05D001082 7.7e-06 55.5 192 23.4
Potri.016G047600 Populus trichocarpa HOM05D001227 ORTHO05D001082 7.7e-06 55.5 199 24.1
AL6G16890 Arabidopsis lyrata HOM05D001227 ORTHO05D001082 1.0e-05 55.1 187 23.5
C02p05860 Brassica napus HOM05D001227 ORTHO05D001082 1.0e-05 55.1 107 32.7
BolC9t59740H Brassica oleracea HOM05D001227 ORTHO05D001082 1.0e-05 55.1 189 22.8
BraA02t05144Z Brassica rapa HOM05D001227 ORTHO05D001082 1.0e-05 55.1 123 32.5


User provided reference genes

Program Settings