Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G38420 Arabidopsis lyrata HOM05D001698 ORTHO05D001805 8.2e-54 213.4 102 100.0
Thhalv10006189m.g Eutrema salsugineum HOM05D001698 ORTHO05D001805 1.7e-38 162.5 96 80.2
Thhalv10006191m.g Eutrema salsugineum HOM05D001698 ORTHO05D001805 1.1e-37 159.8 96 81.2
BcaC02g09883 Brassica carinata HOM05D001698 ORTHO05D001805 9.1e-37 156.8 96 80.2
C04p35580 Brassica napus HOM05D001698 ORTHO05D001805 9.1e-37 156.8 96 80.2
BolC4t25247H Brassica oleracea HOM05D001698 ORTHO05D001805 9.1e-37 156.8 96 80.2
CARHR167120 Cardamine hirsuta HOM05D001698 ORTHO05D001805 2.0e-36 155.6 96 79.2
Sp5g05610 Schrenkiella parvula HOM05D001698 ORTHO05D001805 2.7e-36 155.2 96 80.2
AT3G56970 Arabidopsis thaliana HOM05D001698 ORTHO05D001805 5.9e-36 154.1 96 80.2
CARHR167130 Cardamine hirsuta HOM05D001698 ORTHO05D001805 1.3e-35 152.9 98 78.6
A04p03650 Brassica napus HOM05D001698 ORTHO05D001805 2.9e-35 151.8 97 79.4
BraA04t16070Z Brassica rapa HOM05D001698 ORTHO05D001805 2.9e-35 151.8 97 79.4
AT3G56980 Arabidopsis thaliana HOM05D001698 ORTHO05D001805 6.5e-35 150.6 100 77.0
Carub.0005s2371 Capsella rubella HOM05D001698 ORTHO05D001805 8.5e-35 150.2 98 75.5
Thhalv10006491m.g Eutrema salsugineum HOM05D001698 ORTHO05D001805 3.2e-34 148.3 96 78.1
Carub.0005s2372 Capsella rubella HOM05D001698 ORTHO05D001805 4.2e-34 147.9 100 75.0
AL5G38430 Arabidopsis lyrata HOM05D001698 ORTHO05D001805 5.5e-34 147.5 100 77.0
Sp5g05600 Schrenkiella parvula HOM05D001698 ORTHO05D001805 8.0e-33 143.7 96 72.9
A04p03660 Brassica napus HOM05D001698 ORTHO05D001805 2.0e-31 139.0 96 72.9
BraA04t16069Z Brassica rapa HOM05D001698 ORTHO05D001805 2.0e-31 139.0 96 72.9
BcaB02g08339 Brassica carinata HOM05D001698 ORTHO05D001805 3.4e-31 138.3 96 72.9
Aa31LG10G11850 Aethionema arabicum HOM05D001698 ORTHO05D001805 7.5e-31 137.1 99 72.7
A04p03710 Brassica napus HOM05D001698 ORTHO05D001805 2.2e-30 135.6 96 74.0
BraA04t16063Z Brassica rapa HOM05D001698 ORTHO05D001805 2.2e-30 135.6 96 74.0
BcaC02g09884 Brassica carinata HOM05D001698 ORTHO05D001805 3.7e-30 134.8 94 72.3
C04p35570 Brassica napus HOM05D001698 ORTHO05D001805 3.7e-30 134.8 94 72.3
BolC4t25248H Brassica oleracea HOM05D001698 ORTHO05D001805 3.7e-30 134.8 94 72.3
BcaB02g08337 Brassica carinata HOM05D001698 ORTHO05D001805 3.5e-28 128.3 98 68.4
A07p08730 Brassica napus HOM05D001698 ORTHO05D001805 1.7e-27 125.9 96 70.8
BraA07t28661Z Brassica rapa HOM05D001698 ORTHO05D001805 1.7e-27 125.9 96 70.8
BcaC02g09887 Brassica carinata HOM05D001698 ORTHO05D001805 5.0e-27 124.4 98 69.4
C04p35520 Brassica napus HOM05D001698 ORTHO05D001805 5.0e-27 124.4 98 69.4
BraA04t16068Z Brassica rapa HOM05D001698 ORTHO05D001805 5.0e-27 124.4 98 68.4
BolC4t25107H Brassica oleracea HOM05D001698 ORTHO05D001805 1.1e-26 123.2 98 68.4
BcaB02g08338 Brassica carinata HOM05D001698 ORTHO05D001805 4.2e-26 121.3 96 67.7
A04p03670 Brassica napus HOM05D001698 ORTHO05D001805 4.2e-26 121.3 98 67.3
BcaB06g26528 Brassica carinata HOM05D001698 ORTHO05D001805 5.5e-26 120.9 96 69.8
BcaC02g09890 Brassica carinata HOM05D001698 ORTHO05D001805 1.2e-25 119.8 98 66.3
BcaC06g35556 Brassica carinata HOM05D001698 ORTHO05D001805 1.2e-25 119.8 96 67.7
C04p35500 Brassica napus HOM05D001698 ORTHO05D001805 1.2e-25 119.8 98 66.3
C07p13560 Brassica napus HOM05D001698 ORTHO05D001805 1.2e-25 119.8 96 67.7
BolC7t41850H Brassica oleracea HOM05D001698 ORTHO05D001805 1.2e-25 119.8 96 67.7
Aa31LG10G11880 Aethionema arabicum HOM05D001698 ORTHO05D001805 4.7e-25 117.9 99 63.6
C06p23990 Brassica napus HOM05D001698 ORTHO05D001805 1.0e-24 116.7 97 63.9
BcaC07g40092 Brassica carinata HOM05D001698 ORTHO05D001805 1.4e-24 116.3 96 66.7
BcaC07g40100 Brassica carinata HOM05D001698 ORTHO05D001805 1.4e-24 116.3 96 64.6
BcaC07g40013 Brassica carinata HOM05D001698 ORTHO05D001805 1.8e-24 115.9 96 63.5
BcaC08g44816 Brassica carinata HOM05D001698 ORTHO05D001805 2.3e-24 115.5 97 63.9
C08p32250 Brassica napus HOM05D001698 ORTHO05D001805 2.3e-24 115.5 96 64.6
C08p32290 Brassica napus HOM05D001698 ORTHO05D001805 2.3e-24 115.5 96 68.8
BolC6t37562H Brassica oleracea HOM05D001698 ORTHO05D001805 2.3e-24 115.5 97 63.9
BolC8t50841H Brassica oleracea HOM05D001698 ORTHO05D001805 2.3e-24 115.5 96 64.6
BolC8t50843H Brassica oleracea HOM05D001698 ORTHO05D001805 2.3e-24 115.5 96 68.8
BcaB02g07630 Brassica carinata HOM05D001698 ORTHO05D001805 4.0e-24 114.8 96 63.5
BcaB01g03849 Brassica carinata HOM05D001698 ORTHO05D001805 1.5e-23 112.8 94 64.9
A07p23190 Brassica napus HOM05D001698 ORTHO05D001805 2.6e-23 112.1 97 62.9
BraA07t29983Z Brassica rapa HOM05D001698 ORTHO05D001805 2.6e-23 112.1 97 62.9
BcaC07g40015 Brassica carinata HOM05D001698 ORTHO05D001805 3.4e-23 111.7 96 67.7
BcaB02g07628 Brassica carinata HOM05D001698 ORTHO05D001805 9.8e-23 110.2 96 60.4
BcaC07g40091 Brassica carinata HOM05D001698 ORTHO05D001805 1.3e-22 109.8 94 66.0
A09p49910 Brassica napus HOM05D001698 ORTHO05D001805 1.3e-22 109.8 96 65.6
BraA09t40442Z Brassica rapa HOM05D001698 ORTHO05D001805 1.3e-22 109.8 96 65.6
BcaB05g22947 Brassica carinata HOM05D001698 ORTHO05D001805 1.7e-22 109.4 96 61.5
A09p49890 Brassica napus HOM05D001698 ORTHO05D001805 2.8e-22 108.6 97 62.9
C07p13570 Brassica napus HOM05D001698 ORTHO05D001805 2.8e-22 108.6 96 62.5
BraA09t40440Z Brassica rapa HOM05D001698 ORTHO05D001805 2.8e-22 108.6 97 62.9
BcaB02g07629 Brassica carinata HOM05D001698 ORTHO05D001805 4.9e-22 107.8 96 61.5
BcaC07g40090 Brassica carinata HOM05D001698 ORTHO05D001805 4.9e-22 107.8 94 61.7
A07p08740 Brassica napus HOM05D001698 ORTHO05D001805 1.8e-21 105.9 96 61.5
BraA07t28662Z Brassica rapa HOM05D001698 ORTHO05D001805 1.8e-21 105.9 96 61.5
BcaC07g40089 Brassica carinata HOM05D001698 ORTHO05D001805 2.4e-21 105.5 96 62.5
BcaC07g40098 Brassica carinata HOM05D001698 ORTHO05D001805 2.4e-21 105.5 96 60.4
BcaC06g35555 Brassica carinata HOM05D001698 ORTHO05D001805 7.0e-21 104.0 96 61.5
BolC7t41852H Brassica oleracea HOM05D001698 ORTHO05D001805 7.0e-21 104.0 96 61.5
C06p23960 Brassica napus HOM05D001698 ORTHO05D001805 9.2e-21 103.6 96 60.4
C06p24000 Brassica napus HOM05D001698 ORTHO05D001805 9.2e-21 103.6 94 61.7
BcaC07g40094 Brassica carinata HOM05D001698 ORTHO05D001805 1.2e-20 103.2 96 61.5
BolC6t37561H Brassica oleracea HOM05D001698 ORTHO05D001805 1.2e-20 103.2 96 60.4
A07p23180 Brassica napus HOM05D001698 ORTHO05D001805 3.5e-20 101.7 96 59.4
BraA07t29982Z Brassica rapa HOM05D001698 ORTHO05D001805 3.5e-20 101.7 96 59.4
BcaC07g40014 Brassica carinata HOM05D001698 ORTHO05D001805 4.5e-20 101.3 95 62.1
BcaB06g26522 Brassica carinata HOM05D001698 ORTHO05D001805 1.0e-19 100.1 96 59.4
C08p32280 Brassica napus HOM05D001698 ORTHO05D001805 8.6e-19 97.1 92 60.9
BolC8t50842H Brassica oleracea HOM05D001698 ORTHO05D001805 8.6e-19 97.1 92 60.9
AL4G39220 Arabidopsis lyrata HOM05D001698 ORTHO05D001805 1.5e-18 96.3 97 58.8
AT2G41240 Arabidopsis thaliana HOM05D001698 ORTHO05D001805 7.3e-18 94.0 97 56.7
THA.LOC104816108 Tarenaya hassleriana HOM05D001698 ORTHO05D001805 2.1e-17 92.4 96 53.1
THA.LOC104824402 Tarenaya hassleriana HOM05D001698 ORTHO05D001805 2.1e-17 92.4 96 56.2
BcaC07g40099 Brassica carinata HOM05D001698 ORTHO05D001805 2.8e-17 92.0 94 55.3
A09p49900 Brassica napus HOM05D001698 ORTHO05D001805 2.8e-17 92.0 95 58.9
BraA09t40441Z Brassica rapa HOM05D001698 ORTHO05D001805 2.8e-17 92.0 95 58.9
BcaB05g22945 Brassica carinata HOM05D001698 ORTHO05D001805 3.6e-17 91.7 96 56.2
BcaC02g12765 Brassica carinata HOM05D001698 ORTHO05D001805 3.6e-17 91.7 98 57.1
CARHR136330 Cardamine hirsuta HOM05D001698 ORTHO05D001805 6.1e-17 90.9 97 57.7
Thhalv10017167m.g Eutrema salsugineum HOM05D001698 ORTHO05D001805 1.4e-16 89.7 96 56.2
A04p31440 Brassica napus HOM05D001698 ORTHO05D001805 1.8e-16 89.4 98 56.1
BraA04t18601Z Brassica rapa HOM05D001698 ORTHO05D001805 1.8e-16 89.4 98 56.1
Carub.0004s2356 Capsella rubella HOM05D001698 ORTHO05D001805 3.0e-16 88.6 101 50.5
C04p68850 Brassica napus HOM05D001698 ORTHO05D001805 5.2e-16 87.8 98 55.1
BcaC02g12888 Brassica carinata HOM05D001698 ORTHO05D001805 6.8e-16 87.4 96 54.2
BolC4t28389H Brassica oleracea HOM05D001698 ORTHO05D001805 6.8e-16 87.4 98 55.1
C06p24010 Brassica napus HOM05D001698 ORTHO05D001805 2.6e-15 85.5 67 68.7
BcaC08g44814 Brassica carinata HOM05D001698 ORTHO05D001805 3.4e-15 85.1 81 60.5
BcaC07g40093 Brassica carinata HOM05D001698 ORTHO05D001805 9.8e-15 83.6 96 53.1
A05p02160 Brassica napus HOM05D001698 ORTHO05D001805 2.2e-14 82.4 96 53.1
BraA05t19212Z Brassica rapa HOM05D001698 ORTHO05D001805 2.2e-14 82.4 96 53.1
Sp4g23560 Schrenkiella parvula HOM05D001698 ORTHO05D001805 2.3e-11 72.4 96 49.0
GSVIVG01027323001 Vitis vinifera HOM05D001698 ORTHO05D001805 2.5e-10 68.9 98 41.8
A04p03720 Brassica napus HOM05D001698 ORTHO05D001805 3.3e-10 68.6 70 60.0
CSS0022304 Camellia sinensis var. sinensis HOM05D001698 ORTHO05D001805 7.3e-10 67.4 106 39.6
Gohir.D05G072100 Gossypium hirsutum HOM05D001698 ORTHO05D001805 7.3e-10 67.4 103 41.7
Gorai.009G073100 Gossypium raimondii HOM05D001698 ORTHO05D001805 7.3e-10 67.4 103 41.7
Lalb_Chr25g0286961 Lupinus albus HOM05D001698 ORTHO05D001805 9.5e-10 67.0 98 41.8
Thecc.09G233200 Theobroma cacao HOM05D001698 ORTHO05D001805 1.2e-09 66.6 99 45.5
FAN15G1141 Fragaria x ananassa HOM05D001698 ORTHO05D001805 1.6e-09 66.2 98 43.9
FvH4_2g11650 Fragaria vesca HOM05D001698 ORTHO05D001805 2.1e-09 65.9 98 43.9
FAN24G2962 Fragaria x ananassa HOM05D001698 ORTHO05D001805 2.1e-09 65.9 98 43.9
RcHm_v2.0_Chr6g0270891 Rosa chinensis HOM05D001698 ORTHO05D001805 2.1e-09 65.9 102 43.1
GSVIVG01033618001 Vitis vinifera HOM05D001698 ORTHO05D001805 2.1e-09 65.9 98 40.8
BcaC08g44815 Brassica carinata HOM05D001698 ORTHO05D001805 2.8e-09 65.5 55 61.8
CSS0009166 Camellia sinensis var. sinensis HOM05D001698 ORTHO05D001805 2.8e-09 65.5 106 38.7
DCAR_020561 Daucus carota HOM05D001698 ORTHO05D001805 4.7e-09 64.7 102 43.1
Gohir.A05G069200 Gossypium hirsutum HOM05D001698 ORTHO05D001805 6.2e-09 64.3 103 40.8
Dinv09479 Davidia involucrata HOM05D001698 ORTHO05D001805 1.4e-08 63.2 101 40.6
Lalb_Chr20g0110191 Lupinus albus HOM05D001698 ORTHO05D001805 1.4e-08 63.2 97 40.2
FAN03G2766 Fragaria x ananassa HOM05D001698 ORTHO05D001805 1.8e-08 62.8 98 41.8
Manes.08G058700 Manihot esculenta HOM05D001698 ORTHO05D001805 1.8e-08 62.8 104 39.4
Dinv12050 Davidia involucrata HOM05D001698 ORTHO05D001805 2.3e-08 62.4 98 41.8
Lj1A1094T41 Lonicera japonica HOM05D001698 ORTHO05D001805 3.1e-08 62.0 92 41.3
Ciclev10006413m.g Citrus clementina HOM05D001698 ORTHO05D001805 4.0e-08 61.6 96 40.6
FvH4_7g03950 Fragaria vesca HOM05D001698 ORTHO05D001805 6.8e-08 60.8 98 40.8
FAN06G1474 Fragaria x ananassa HOM05D001698 ORTHO05D001805 6.8e-08 60.8 98 40.8
TAR623G0359 Trochodendron aralioides HOM05D001698 ORTHO05D001805 6.8e-08 60.8 93 35.5
COL.COLO4_07589 Corchorus olitorius HOM05D001698 ORTHO05D001805 8.9e-08 60.5 93 39.8
Duzib170G0503 Durio zibethinus HOM05D001698 ORTHO05D001805 8.9e-08 60.5 94 42.6
Potri.016G037300 Populus trichocarpa HOM05D001698 ORTHO05D001805 1.2e-07 60.1 91 45.1
ECA248G3607 Erigeron canadensis HOM05D001698 ORTHO05D001805 1.5e-07 59.7 109 37.6
Lalb_Chr25g0286951 Lupinus albus HOM05D001698 ORTHO05D001805 1.5e-07 59.7 97 42.3
MD14G1086500 Malus domestica HOM05D001698 ORTHO05D001805 2.0e-07 59.3 100 40.0
CANSAT64G0196 Cannabis sativa HOM05D001698 ORTHO05D001805 2.6e-07 58.9 114 37.7
CsaV3_4G029740 Cucumis sativus L. HOM05D001698 ORTHO05D001805 2.6e-07 58.9 105 40.0
Prupe.1G213700 Prunus persica HOM05D001698 ORTHO05D001805 2.6e-07 58.9 100 37.0
RcHm_v2.0_Chr1g0321521 Rosa chinensis HOM05D001698 ORTHO05D001805 2.6e-07 58.9 96 41.7
MELO3C019065.2 Cucumis melo HOM05D001698 ORTHO05D001805 3.4e-07 58.5 102 38.2
Potri.006G037600 Populus trichocarpa HOM05D001698 ORTHO05D001805 3.4e-07 58.5 91 44.0
Actinidia38158 Actinidia chinensis HOM05D001698 ORTHO05D001805 4.4e-07 58.2 98 36.7
Cpa.g.sc5.180 Carica papaya HOM05D001698 ORTHO05D001805 4.4e-07 58.2 104 38.5
ECA248G0855 Erigeron canadensis HOM05D001698 ORTHO05D001805 4.4e-07 58.2 109 37.6
Prupe.7G039800 Prunus persica HOM05D001698 ORTHO05D001805 4.4e-07 58.2 100 37.0
Prupe.7G039900 Prunus persica HOM05D001698 ORTHO05D001805 4.4e-07 58.2 99 37.4
Sabra06G0025500 Salix brachista HOM05D001698 ORTHO05D001805 4.4e-07 58.2 91 42.9
Sed0024572 Sechium edule HOM05D001698 ORTHO05D001805 9.8e-07 57.0 106 39.6
Atru.chr1.1450 Acer truncatum HOM05D001698 ORTHO05D001805 1.3e-06 56.6 97 41.2
DCAR_020569 Daucus carota HOM05D001698 ORTHO05D001805 1.3e-06 56.6 102 37.3
Duzib093G1883 Durio zibethinus HOM05D001698 ORTHO05D001805 1.7e-06 56.2 101 41.6
HanXRQChr10g0298681 Helianthus annuus HOM05D001698 ORTHO05D001805 2.2e-06 55.8 100 39.0
HanXRQChr10g0298711 Helianthus annuus HOM05D001698 ORTHO05D001805 2.2e-06 55.8 97 42.3
HanXRQChr10g0298721 Helianthus annuus HOM05D001698 ORTHO05D001805 2.2e-06 55.8 97 42.3
Lsat_1_v5_gn_5_158120 Lactuca sativa HOM05D001698 ORTHO05D001805 2.2e-06 55.8 101 39.6
MBI19_g25616_MAGBIO Magnolia biondii HOM05D001698 ORTHO05D001805 2.2e-06 55.8 100 33.0
Ah.13g076890 Amaranthus hybridus HOM05D001698 ORTHO05D001805 3.7e-06 55.1 114 36.0
ClCG04G004360 Citrullus lanatus HOM05D001698 ORTHO05D001805 4.9e-06 54.7 106 38.7
ECA248G2849 Erigeron canadensis HOM05D001698 ORTHO05D001805 4.9e-06 54.7 108 38.9
Medtr1g048720 Medicago truncatula HOM05D001698 ORTHO05D001805 4.9e-06 54.7 96 34.4
Thecc.05G136300 Theobroma cacao HOM05D001698 ORTHO05D001805 4.9e-06 54.7 101 42.6
Lj1P1092T11 Lonicera japonica HOM05D001698 ORTHO05D001805 6.4e-06 54.3 100 39.0
Sed0013012 Sechium edule HOM05D001698 ORTHO05D001805 6.4e-06 54.3 105 35.2
Ca_26784_v3 Cicer arietinum L. HOM05D001698 ORTHO05D001805 8.3e-06 53.9 101 38.6
Psat6g049440 Pisum sativum HOM05D001698 ORTHO05D001805 8.3e-06 53.9 91 40.7


User provided reference genes

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