Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G38080 Arabidopsis lyrata HOM05D002974 ORTHO05D002992 2.9e-82 308.5 156 100.0
AT3G56710 Arabidopsis thaliana HOM05D002974 ORTHO05D002992 4.3e-70 268.1 156 90.4
Sp5g05850 Schrenkiella parvula HOM05D002974 ORTHO05D002992 3.0e-55 218.8 158 79.1
CARHR166850 Cardamine hirsuta HOM05D002974 ORTHO05D002992 5.6e-54 214.5 158 78.5
BcaC07g40124 Brassica carinata HOM05D002974 ORTHO05D002992 2.0e-51 206.1 152 76.3
A09p49560 Brassica napus HOM05D002974 ORTHO05D002992 7.6e-51 204.1 152 76.3
BraA09t40409Z Brassica rapa HOM05D002974 ORTHO05D002992 7.6e-51 204.1 152 76.3
C06p23750 Brassica napus HOM05D002974 ORTHO05D002992 1.7e-50 203.0 155 74.8
BcaB02g07639 Brassica carinata HOM05D002974 ORTHO05D002992 8.4e-50 200.7 155 73.5
BcaC08g44803 Brassica carinata HOM05D002974 ORTHO05D002992 3.2e-49 198.7 155 74.2
BolC6t37544H Brassica oleracea HOM05D002974 ORTHO05D002992 3.2e-49 198.7 155 74.2
C08p31950 Brassica napus HOM05D002974 ORTHO05D002992 4.2e-49 198.4 152 74.3
BolC8t50812H Brassica oleracea HOM05D002974 ORTHO05D002992 4.2e-49 198.4 152 74.3
Carub.0005s2345 Capsella rubella HOM05D002974 ORTHO05D002992 5.5e-49 198.0 161 75.8
BcaB02g08351 Brassica carinata HOM05D002974 ORTHO05D002992 7.9e-48 194.1 155 71.6
BraA04t16085Z Brassica rapa HOM05D002974 ORTHO05D002992 7.4e-46 187.6 158 70.9
BcaC02g09866 Brassica carinata HOM05D002974 ORTHO05D002992 3.1e-44 182.2 158 67.1
BraA04t16084Z Brassica rapa HOM05D002974 ORTHO05D002992 6.9e-44 181.0 156 69.2
BcaB02g08350 Brassica carinata HOM05D002974 ORTHO05D002992 9.0e-44 180.6 156 69.9
C04p35760 Brassica napus HOM05D002974 ORTHO05D002992 1.7e-42 176.4 155 67.1
A04p03510 Brassica napus HOM05D002974 ORTHO05D002992 6.5e-42 174.5 157 67.5
Thhalv10006291m.g Eutrema salsugineum HOM05D002974 ORTHO05D002992 1.9e-41 172.9 148 69.6
BolC4t25224H Brassica oleracea HOM05D002974 ORTHO05D002992 3.2e-41 172.2 158 64.6
BcaC07g39979 Brassica carinata HOM05D002974 ORTHO05D002992 2.8e-37 159.1 131 71.0
Sp4g23480 Schrenkiella parvula HOM05D002974 ORTHO05D002992 1.4e-28 130.2 157 58.0
Thhalv10017346m.g Eutrema salsugineum HOM05D002974 ORTHO05D002992 5.9e-27 124.8 155 53.5
BraA05t19205Z Brassica rapa HOM05D002974 ORTHO05D002992 7.7e-27 124.4 155 52.9
CARHR136270 Cardamine hirsuta HOM05D002974 ORTHO05D002992 2.2e-26 122.9 153 52.9
AL4G39150 Arabidopsis lyrata HOM05D002974 ORTHO05D002992 1.4e-25 120.2 121 57.9
BcaB01g03488 Brassica carinata HOM05D002974 ORTHO05D002992 5.5e-25 118.2 158 52.5
AT2G41180 Arabidopsis thaliana HOM05D002974 ORTHO05D002992 7.2e-25 117.9 122 57.4
C03p27500 Brassica napus HOM05D002974 ORTHO05D002992 1.2e-24 117.1 157 52.2
BolC3t15126H Brassica oleracea HOM05D002974 ORTHO05D002992 1.2e-24 117.1 157 52.2
THA.LOC104824399 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 1.2e-24 117.1 150 53.3
BcaC01g05357 Brassica carinata HOM05D002974 ORTHO05D002992 3.6e-24 115.5 157 51.0
THA.LOC104803260 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 1.4e-23 113.6 151 51.0
Aa31LG10G11550 Aethionema arabicum HOM05D002974 ORTHO05D002992 6.7e-23 111.3 162 51.9
BcaC02g12758 Brassica carinata HOM05D002974 ORTHO05D002992 6.7e-23 111.3 157 48.4
BolC4t21893H Brassica oleracea HOM05D002974 ORTHO05D002992 6.7e-23 111.3 157 49.7
A03p23100 Brassica napus HOM05D002974 ORTHO05D002992 2.6e-22 109.4 120 52.5
BraA03t11531Z Brassica rapa HOM05D002974 ORTHO05D002992 2.6e-22 109.4 120 52.5
C04p02500 Brassica napus HOM05D002974 ORTHO05D002992 4.8e-21 105.1 157 49.0
Carub.0004s2349 Capsella rubella HOM05D002974 ORTHO05D002992 1.4e-20 103.6 123 52.8
THA.LOC104816020 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 5.3e-20 101.7 149 49.7
A05p02090 Brassica napus HOM05D002974 ORTHO05D002992 7.0e-20 101.3 143 49.7
BcaC02g09865 Brassica carinata HOM05D002974 ORTHO05D002992 9.4e-17 90.9 68 73.5
BolC4t25225H Brassica oleracea HOM05D002974 ORTHO05D002992 9.4e-17 90.9 68 73.5
CSS0033077 Camellia sinensis var. sinensis HOM05D002974 ORTHO05D002992 3.8e-10 68.9 141 40.4
Sed0012008 Sechium edule HOM05D002974 ORTHO05D002992 7.2e-09 64.7 72 50.0
Duzib106G0159 Durio zibethinus HOM05D002974 ORTHO05D002992 9.4e-09 64.3 130 37.7
Manes.09G004900 Manihot esculenta HOM05D002974 ORTHO05D002992 3.6e-08 62.4 76 50.0
Actinidia01827 Actinidia chinensis HOM05D002974 ORTHO05D002992 8.0e-08 61.2 114 42.1
Gohir.A11G307100 Gossypium hirsutum HOM05D002974 ORTHO05D002992 8.0e-08 61.2 62 54.8
Atru.chr12.1277 Acer truncatum HOM05D002974 ORTHO05D002992 1.4e-07 60.5 152 33.6
FAN01G3097 Fragaria x ananassa HOM05D002974 ORTHO05D002992 1.4e-07 60.5 49 61.2
FAN03G0828 Fragaria x ananassa HOM05D002974 ORTHO05D002992 1.4e-07 60.5 49 61.2
Lalb_Chr24g0400351 Lupinus albus HOM05D002974 ORTHO05D002992 1.4e-07 60.5 71 52.1
CiPaw.09G047800 Carya illinoinensis HOM05D002974 ORTHO05D002992 1.8e-07 60.1 149 36.2
FAN10G2850 Fragaria x ananassa HOM05D002974 ORTHO05D002992 1.8e-07 60.1 49 61.2
Glyma.03G127800 Glycine max HOM05D002974 ORTHO05D002992 3.0e-07 59.3 126 42.1
Sed0014788 Sechium edule HOM05D002974 ORTHO05D002992 3.0e-07 59.3 130 35.4
Cfa020005 Carpinus fangiana HOM05D002974 ORTHO05D002992 5.2e-07 58.5 146 35.6
RcHm_v2.0_Chr2g0125651 Rosa chinensis HOM05D002974 ORTHO05D002992 5.2e-07 58.5 56 57.1
CiPaw.14G008700 Carya illinoinensis HOM05D002974 ORTHO05D002992 6.7e-07 58.2 109 33.0
RcHm_v2.0_Chr1g0325821 Rosa chinensis HOM05D002974 ORTHO05D002992 6.7e-07 58.2 49 65.3
Sabra16G0038800 Salix brachista HOM05D002974 ORTHO05D002992 6.7e-07 58.2 131 35.1
VMungo1383G0235 Vigna mungo HOM05D002974 ORTHO05D002992 6.7e-07 58.2 64 56.2
Atru.chr1.1439 Acer truncatum HOM05D002974 ORTHO05D002992 8.8e-07 57.8 58 56.9
Cpa.g.sc5.168 Carica papaya HOM05D002974 ORTHO05D002992 8.8e-07 57.8 60 56.7
CiPaw.10G040200 Carya illinoinensis HOM05D002974 ORTHO05D002992 8.8e-07 57.8 64 57.8
Lalb_Chr06g0173671 Lupinus albus HOM05D002974 ORTHO05D002992 8.8e-07 57.8 67 53.7
Glyma.19G130400 Glycine max HOM05D002974 ORTHO05D002992 1.2e-06 57.4 119 38.7
FvH4_7g03520 Fragaria vesca HOM05D002974 ORTHO05D002992 1.5e-06 57.0 49 63.3
FAN06G3677 Fragaria x ananassa HOM05D002974 ORTHO05D002992 1.5e-06 57.0 49 63.3
PGR031G3974 Punica granatum HOM05D002974 ORTHO05D002992 1.5e-06 57.0 76 51.3
Thecc.05G134100 Theobroma cacao HOM05D002974 ORTHO05D002992 1.5e-06 57.0 71 53.5
TAR623G1017 Trochodendron aralioides HOM05D002974 ORTHO05D002992 1.5e-06 57.0 47 70.2
ClCG10G016220 Citrullus lanatus HOM05D002974 ORTHO05D002992 2.0e-06 56.6 75 46.7
Haze_20227 Corylus avellana HOM05D002974 ORTHO05D002992 2.0e-06 56.6 72 50.0
ClCG04G004500 Citrullus lanatus HOM05D002974 ORTHO05D002992 2.6e-06 56.2 62 56.5
Duzib128G1163 Durio zibethinus HOM05D002974 ORTHO05D002992 2.6e-06 56.2 48 64.6
FAN05G2143 Fragaria x ananassa HOM05D002974 ORTHO05D002992 2.6e-06 56.2 117 38.5
Manes.04G157400 Manihot esculenta HOM05D002974 ORTHO05D002992 2.6e-06 56.2 120 39.2
FvH4_6g25410 Fragaria vesca HOM05D002974 ORTHO05D002992 3.3e-06 55.8 61 52.5
FAN02G0528 Fragaria x ananassa HOM05D002974 ORTHO05D002992 3.3e-06 55.8 58 55.2
Nn2g14777 Nelumbo nucifera HOM05D002974 ORTHO05D002992 3.3e-06 55.8 131 38.2
Cc06_g19310 Coffea canephora HOM05D002974 ORTHO05D002992 4.4e-06 55.5 62 54.8
Duzib114G0524 Durio zibethinus HOM05D002974 ORTHO05D002992 4.4e-06 55.5 139 33.8
Sed0004403 Sechium edule HOM05D002974 ORTHO05D002992 4.4e-06 55.5 73 49.3
CsaV3_4G029660 Cucumis sativus L. HOM05D002974 ORTHO05D002992 5.7e-06 55.1 76 53.9
Eucgr.A02242 Eucalyptus grandis HOM05D002974 ORTHO05D002992 5.7e-06 55.1 79 46.8
Gohir.D11G322600 Gossypium hirsutum HOM05D002974 ORTHO05D002992 5.7e-06 55.1 54 57.4
Gorai.007G352700 Gossypium raimondii HOM05D002974 ORTHO05D002992 5.7e-06 55.1 54 57.4
Gorai.011G217100 Gossypium raimondii HOM05D002974 ORTHO05D002992 5.7e-06 55.1 132 34.1
Lj1g0016303 Lotus japonicus HOM05D002974 ORTHO05D002992 5.7e-06 55.1 74 48.6
ATR1096G079 Amborella trichopoda HOM05D002974 ORTHO05D002992 7.5e-06 54.7 63 55.6
Cfa010941 Carpinus fangiana HOM05D002974 ORTHO05D002992 7.5e-06 54.7 48 62.5
DCAR_013643 Daucus carota HOM05D002974 ORTHO05D002992 7.5e-06 54.7 69 49.3
Nn7g36749 Nelumbo nucifera HOM05D002974 ORTHO05D002992 7.5e-06 54.7 131 36.6
Ciclev10002803m.g Citrus clementina HOM05D002974 ORTHO05D002992 9.7e-06 54.3 116 33.6
MELO3C004408.2 Cucumis melo HOM05D009218 ORTHO05D010069 9.7e-06 54.3 133 33.8
MELO3C019076.2 Cucumis melo HOM05D002974 ORTHO05D002992 9.7e-06 54.3 86 48.8
FAN09G2803 Fragaria x ananassa HOM05D002974 ORTHO05D002992 9.7e-06 54.3 58 55.2
Gohir.D10G194600 Gossypium hirsutum HOM05D002974 ORTHO05D002992 9.7e-06 54.3 138 32.6
Oeu029509.1 Olea europaea HOM05D002974 ORTHO05D002992 9.7e-06 54.3 64 53.1
TWI15G0153 Tripterygium wilfordii HOM05D002974 ORTHO05D002992 9.7e-06 54.3 135 32.6


User provided reference genes

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