Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G37140 Arabidopsis lyrata HOM05D006097 ORTHO05D008538 0.0e+00 1154.8 577 100.0
Carub.0005s2263 Capsella rubella HOM05D006097 ORTHO05D008538 6.2e-308 1060.1 577 90.5
C04p36530 Brassica napus HOM05D006097 ORTHO05D008538 2.1e-303 1045.0 577 89.1
Sp5g06630 Schrenkiella parvula HOM05D006097 ORTHO05D008538 2.1e-303 1045.0 577 89.3
BraA04t16135Z Brassica rapa HOM05D006097 ORTHO05D008538 1.8e-302 1042.0 577 89.1
Thhalv10010237m.g Eutrema salsugineum HOM05D006097 ORTHO05D008538 1.8e-302 1042.0 577 88.7
BcaC02g09793 Brassica carinata HOM05D006097 ORTHO05D008538 3.0e-302 1041.2 577 88.7
BcaB02g08396 Brassica carinata HOM05D006097 ORTHO05D008538 4.3e-301 1037.3 577 88.4
BolC4t25143H Brassica oleracea HOM05D006097 ORTHO05D008538 4.8e-300 1033.9 595 86.4
A04p04190 Brassica napus HOM05D006097 ORTHO05D008538 6.9e-299 1030.0 577 88.0
CARHR165960 Cardamine hirsuta HOM05D006097 ORTHO05D008538 2.2e-281 971.8 583 83.4
Aa31LG10G10820 Aethionema arabicum HOM05D006097 ORTHO05D008538 1.2e-274 949.5 583 80.8
THA.LOC104826726 Tarenaya hassleriana HOM05D006097 ORTHO05D008538 2.5e-272 941.8 577 79.2
AT3G55850 Arabidopsis thaliana HOM05D006097 ORTHO05D008538 2.6e-245 852.0 463 91.8
Ciclev10004623m.g Citrus clementina HOM05D006097 ORTHO05D008538 2.8e-231 805.4 583 67.2
Dinv22036 Davidia involucrata HOM05D006097 ORTHO05D008538 1.8e-230 802.7 577 68.5
Gohir.A06G175000 Gossypium hirsutum HOM05D006097 ORTHO05D008538 5.2e-230 801.2 578 68.2
COL.COLO4_20657 Corchorus olitorius HOM05D006097 ORTHO05D008538 8.9e-230 800.4 578 67.8
Gohir.D06G184900 Gossypium hirsutum HOM05D006097 ORTHO05D008538 1.7e-228 796.2 578 68.0
Gorai.010G216200 Gossypium raimondii HOM05D006097 ORTHO05D008538 8.3e-228 793.9 580 67.9
GSVIVG01013488001 Vitis vinifera HOM05D006097 ORTHO05D008538 2.4e-227 792.3 579 67.4
Actinidia21518 Actinidia chinensis HOM05D006097 ORTHO05D008538 2.0e-226 789.3 577 67.4
QL04p017855 Quercus lobata HOM05D006097 ORTHO05D008538 1.3e-225 786.6 588 65.5
Atru.chr7.628 Acer truncatum HOM05D006097 ORTHO05D008538 1.7e-225 786.2 577 66.2
Thecc.10G154600 Theobroma cacao HOM05D006097 ORTHO05D008538 1.2e-223 780.0 578 66.6
Haze_03039 Corylus avellana HOM05D006097 ORTHO05D008538 1.4e-222 776.5 579 66.3
Duzib114G0946 Durio zibethinus HOM05D006097 ORTHO05D008538 4.0e-222 775.0 578 66.4
Prupe.2G036100 Prunus persica HOM05D006097 ORTHO05D008538 5.2e-222 774.6 577 66.6
CiPaw.14G007600 Carya illinoinensis HOM05D006097 ORTHO05D008538 4.4e-221 771.5 577 65.2
PGR031G1965 Punica granatum HOM05D006097 ORTHO05D008538 5.8e-221 771.2 579 65.8
MD07G1040200 Malus domestica HOM05D006097 ORTHO05D008538 3.7e-220 768.5 577 65.5
Nn2g14836 Nelumbo nucifera HOM05D006097 ORTHO05D008538 9.2e-219 763.8 577 64.8
Manes.04G159300 Manihot esculenta HOM05D006097 ORTHO05D008538 2.1e-218 762.7 584 64.6
TPR.G17806 Trifolium pratense HOM05D006097 ORTHO05D008538 1.7e-217 759.6 581 63.9
Cfa010917 Carpinus fangiana HOM05D006097 ORTHO05D008538 7.3e-216 754.2 610 63.1
ECA236G3136 Erigeron canadensis HOM05D006097 ORTHO05D008538 2.8e-215 752.3 538 67.5
PSO339G1331 Papaver somniferum HOM05D006097 ORTHO05D008538 4.7e-215 751.5 575 63.7
CANSAT56G2143 Cannabis sativa HOM05D006097 ORTHO05D008538 8.1e-215 750.7 573 64.0
CAN.G176.2 Capsicum annuum HOM05D006097 ORTHO05D008538 8.9e-214 747.3 587 63.0
AUR62032650 Chenopodium quinoa HOM05D006097 ORTHO05D008538 1.2e-213 746.9 573 64.6
Nitab4.5_0001621g0010 Nicotiana tabacum HOM05D006097 ORTHO05D008538 1.2e-213 746.9 577 64.5
Medtr3g014750 Medicago truncatula HOM05D006097 ORTHO05D008538 1.5e-213 746.5 582 62.0
Peaxi162Scf00767g00518 Petunia axillaris HOM05D006097 ORTHO05D008538 2.6e-213 745.7 535 66.5
HanXRQChr04g0113861 Helianthus annuus HOM05D006097 ORTHO05D008538 3.4e-213 745.3 582 63.9
Glyma.13G197200 Glycine max HOM05D006097 ORTHO05D008538 8.4e-212 740.7 576 63.9
Sopen08g005450 Solanum pennellii HOM05D006097 ORTHO05D008538 8.4e-212 740.7 581 63.2
Lsat_1_v5_gn_7_31901 Lactuca sativa HOM05D006097 ORTHO05D004880 1.1e-211 740.3 555 65.8
Psat5g221440 Pisum sativum HOM05D006097 ORTHO05D008538 3.2e-211 738.8 578 61.9
RcHm_v2.0_Chr1g0324291 Rosa chinensis HOM05D006097 ORTHO05D008538 3.2e-211 738.8 573 63.5
FAN01G0546 Fragaria x ananassa HOM05D006097 ORTHO05D008538 5.4e-211 738.0 577 62.9
Cc02_g30220 Coffea canephora HOM05D006097 ORTHO05D008538 9.2e-211 737.3 588 63.1
Potri.003G196300 Populus trichocarpa HOM05D006097 ORTHO05D008538 2.7e-210 735.7 577 63.1
Sabra03G0146400 Salix brachista HOM05D006097 ORTHO05D008538 7.8e-210 734.2 619 59.3
Hund13358 Selenicereus undatus HOM05D006097 ORTHO05D008538 1.7e-209 733.0 576 63.2
SGA_v2.0_scaffold232G43504 Striga asiatica HOM05D006097 ORTHO05D008538 5.1e-209 731.5 574 62.4
Lalb_Chr19g0132421 Lupinus albus HOM05D006097 ORTHO05D008538 1.5e-208 729.9 575 61.7
Lj3g0013868 Lotus japonicus HOM05D006097 ORTHO05D008538 5.6e-208 728.0 574 62.4
ATR0745G019 Amborella trichopoda HOM05D006097 ORTHO05D008538 1.2e-207 726.9 537 64.1
SalBow6G4726 Salvia bowleyana HOM05D006097 ORTHO05D008538 1.6e-207 726.5 556 63.5
Migut.N01845 Erythranthe guttata HOM05D006097 ORTHO05D008538 6.2e-207 724.5 579 60.8
FvH4_7g03070 Fragaria vesca HOM05D006097 ORTHO05D008538 1.8e-206 723.0 570 62.6
Ah.12g062830 Amaranthus hybridus HOM05D006097 ORTHO05D008538 1.2e-205 720.3 575 61.0
Os01g0952700 Oryza sativa ssp. japonica HOM05D006097 ORTHO05D008538 3.8e-204 715.3 537 62.4
Aqoxy2G00367 Aquilegia oxysepala HOM05D006097 ORTHO05D008538 1.4e-203 713.4 514 66.5
AUR62026861 Chenopodium quinoa HOM05D006097 ORTHO05D008538 9.3e-203 710.7 573 62.0
CsaV3_5G036770 Cucumis sativus L. HOM05D006097 ORTHO05D008538 2.1e-202 709.5 537 62.8
Eucgr.G03235 Eucalyptus grandis HOM05D006097 ORTHO05D008538 4.8e-199 698.4 579 59.9
arahy.Tifrunner.gnm1.ann1.HF4B4K Arachis hypogaea HOM05D006097 ORTHO05D008538 5.8e-197 691.4 628 56.2
CSS0004732 Camellia sinensis var. sinensis HOM05D006097 ORTHO05D008538 6.4e-196 688.0 579 61.7
EL10Ac2g02801 Beta vulgaris HOM05D006097 ORTHO05D008538 2.4e-195 686.0 657 54.3
ClCG05G026810 Citrullus lanatus HOM05D006097 ORTHO05D008538 2.5e-192 676.0 544 60.5
HPP92_013975 Vanilla planifolia HOM05D006097 ORTHO05D008538 8.1e-191 671.0 575 57.6
Phvul.011G206500 Phaseolus vulgaris HOM05D006097 ORTHO05D008538 2.4e-187 659.4 494 63.8
Sc07g0002170 Simmondsia chinensis HOM05D006097 ORTHO05D008538 4.2e-187 658.7 462 68.6
SEGI_19069 Sequoiadendron giganteum HOM05D006097 ORTHO05D008538 1.4e-182 643.7 576 54.9
PGSC0003DMG400025223 Solanum tuberosum HOM05D006097 ORTHO05D008538 1.8e-182 643.3 460 66.3
Hma1.2p1_1627F.1_g294440 Hydrangea macrophylla HOM05D006097 ORTHO05D008538 1.2e-181 640.6 463 67.6
Solyc08g014470.4 Solanum lycopersicum HOM05D006097 ORTHO05D008538 1.1e-179 634.0 460 65.7
DCAR_031244 Daucus carota HOM05D006097 ORTHO05D008538 1.5e-173 613.6 460 64.1
arahy.Tifrunner.gnm1.ann1.RMFD7W Arachis hypogaea HOM05D006097 ORTHO05D008538 2.9e-172 609.4 618 51.9
MBI19_g07612_MAGBIO Magnolia biondii HOM05D006097 ORTHO05D008538 5.0e-164 582.0 527 56.5
Rhsim01G0124100 Rhododendron simsii HOM05D005112 ORTHO05D006681 1.1e-163 580.9 535 57.4
MELO3C012474.2 Cucumis melo HOM05D006097 ORTHO05D008538 2.1e-162 576.6 426 62.9
Hma1.2p1_1627F.1_g294450 Hydrangea macrophylla HOM05D006097 ORTHO05D008538 3.3e-160 569.3 463 62.0
QL04p017846 Quercus lobata HOM05D006097 ORTHO05D008538 1.3e-159 567.4 399 67.2
Thhalv10010899m.g Eutrema salsugineum HOM05D006097 ORTHO05D008538 2.4e-158 563.1 309 89.3
unitig_52.g17390 Utricularia gibba HOM05D006097 ORTHO05D008538 4.1e-158 562.4 509 57.8
Sed0002543 Sechium edule HOM05D006097 ORTHO05D008538 4.2e-155 552.4 545 51.9
Mapoly0021s0162 Marchantia polymorpha HOM05D006097 ORTHO05D008538 5.3e-150 535.4 575 47.5
SMO367G1089 Selaginella moellendorffii HOM05D006097 ORTHO05D008538 3.5e-149 532.7 533 49.3
AagrBONN_evm.TU.Sc2ySwM_340.253 Anthoceros agrestis HOM05D006097 ORTHO05D008538 2.2e-143 513.5 534 48.5
AUR62037188 Chenopodium quinoa HOM05D006097 ORTHO05D008538 1.1e-139 501.1 395 62.3
Pp3c20_1490 Physcomitrium patens HOM05D006097 ORTHO05D008538 8.8e-137 491.5 576 45.7
TAR623G0406 Trochodendron aralioides HOM05D006097 ORTHO05D008538 1.5e-136 490.7 351 68.1
Glyma.15G235400 Glycine max HOM05D006097 ORTHO05D008538 4.5e-133 479.2 516 49.6
Oeu048573.1 Olea europaea HOM05D006097 ORTHO05D008538 1.5e-123 447.6 359 59.6
CDE06G1230 Ceratophyllum demersum HOM05D006097 ORTHO05D008538 1.4e-113 414.5 355 54.9
Ca_26912_v3 Cicer arietinum L. HOM05D006097 ORTHO05D008538 1.5e-112 411.0 296 64.2
FAN06G0154 Fragaria x ananassa HOM05D005112 ORTHO05D006681 3.7e-111 406.4 536 43.5
vmacro12697 Vaccinium macrocarpon HOM05D006097 ORTHO05D008538 7.1e-102 375.6 267 69.3
VMungo1127G1698 Vigna mungo HOM05D006097 ORTHO05D008538 1.6e-101 374.4 271 66.8
SMO367G0062 Selaginella moellendorffii HOM05D006097 ORTHO05D005621 1.9e-91 340.9 513 40.5
Lj9A654G51 Lonicera japonica HOM05D006097 ORTHO05D008538 3.6e-90 336.7 238 68.5
Zm00001eb140700 Zea mays HOM05D006097 ORTHO05D008538 1.8e-89 334.3 249 64.3
FAN10G0529 Fragaria x ananassa HOM05D006097 ORTHO05D008538 1.1e-86 325.1 421 45.6
MCO06G284 Micromonas commoda HOM05D006097 ORTHO05D008538 1.3e-84 318.2 563 36.2
Cre06.g279350 Chlamydomonas reinhardtii HOM05D006097 ORTHO05D008538 2.4e-73 280.8 475 36.0
SMO343G0029 Selaginella moellendorffii HOM05D004978 ORTHO05D005621 1.5e-67 261.5 503 37.0
VMungo1127G1548 Vigna mungo HOM05D006097 ORTHO05D008538 1.3e-66 258.5 206 58.3
TAR623G0702 Trochodendron aralioides HOM05D006097 ORTHO05D008538 1.1e-62 245.4 202 57.4
Pp3s32_630 Physcomitrium patens HOM05D006097 ORTHO05D008538 1.3e-55 221.9 545 31.6
Lj9A654T55 Lonicera japonica HOM05D006097 ORTHO05D008538 5.5e-54 216.5 145 67.6
Cre07.g313350 Chlamydomonas reinhardtii HOM05D006097 ORTHO05D008538 5.7e-51 206.5 611 27.8
PRCOL_00006109 Prasinoderma coloniale HOM05D006097 ORTHO05D008538 4.8e-50 203.4 397 36.5
QL04p017840 Quercus lobata HOM05D006097 ORTHO05D008538 1.6e-45 188.3 123 73.2
CDE06G0927 Ceratophyllum demersum HOM05D006097 ORTHO05D020391 2.0e-27 128.3 135 49.6
Ca_03883_v3 Cicer arietinum L. HOM05D006097 ORTHO05D008538 7.5e-27 126.3 97 62.9
Nn2g16009 Nelumbo nucifera HOM05D006097 ORTHO05D008538 7.0e-25 119.8 91 61.5
Carub.0002s2671 Capsella rubella HOM05D006097 ORTHO05D008538 1.9e-22 111.7 57 89.5
DCAR_031243 Daucus carota HOM05D006097 ORTHO05D020391 4.2e-22 110.5 117 52.1
SMO197G0087 Selaginella moellendorffii HOM05D003320 ORTHO05D003941 4.7e-21 107.1 140 43.6
CDE06G2151 Ceratophyllum demersum HOM05D006097 ORTHO05D008538 1.0e-20 105.9 82 63.4
Medtr1224s0010 Medicago truncatula HOM05D006097 ORTHO05D008538 1.7e-18 98.6 539 24.9
SMO274G0019 Selaginella moellendorffii HOM05D009261 ORTHO05D011006 1.7e-18 98.6 117 45.3
SMO212G0005 Selaginella moellendorffii HOM05D009261 ORTHO05D011006 3.7e-18 97.4 217 30.4
SMO005G0015 Selaginella moellendorffii HOM05D006097 ORTHO05D011308 4.1e-17 94.0 105 45.7
SMO125G0001 Selaginella moellendorffii HOM05D009261 ORTHO05D011006 7.0e-17 93.2 136 39.7
SMO009G0029 Selaginella moellendorffii HOM05D009261 ORTHO05D011006 1.6e-16 92.0 124 40.3
SEGI_33421 Sequoiadendron giganteum HOM05D006097 ORTHO05D020391 7.7e-16 89.7 141 40.4
RcHm_v2.0_Chr6g0254811 Rosa chinensis HOM05D006097 ORTHO05D020391 1.4e-12 79.0 56 64.3
BolC8t50740H Brassica oleracea HOM05D035890 ORTHO05D033370 4.9e-10 70.5 42 78.6
Nn313s46297 Nelumbo nucifera HOM05D006097 ORTHO05D008538 1.1e-09 69.3 46 69.6
CDE06G1678 Ceratophyllum demersum HOM05D006097 ORTHO05D008538 1.2e-08 65.9 53 52.8
C08p31170 Brassica napus HOM05D035890 ORTHO05D033370 7.8e-08 63.2 41 75.6
Hma1.2p1_0269F.1_g107740 Hydrangea macrophylla HOM05D006097 ORTHO05D020391 7.3e-06 56.6 35 71.4
Hma1.2p1_3244F.1_g334325 Hydrangea macrophylla HOM05D006097 ORTHO05D020391 7.3e-06 56.6 35 71.4


User provided reference genes

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