Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G35150 Arabidopsis lyrata HOM05D005750 ORTHO05D007126 3.1e-159 565.1 284 100.0
AT3G54130 Arabidopsis thaliana HOM05D005750 ORTHO05D007126 2.9e-149 531.9 284 95.1
CARHR164010 Cardamine hirsuta HOM05D005750 ORTHO05D007126 1.4e-148 529.6 284 93.0
Carub.0005s2072 Capsella rubella HOM05D005750 ORTHO05D007126 6.1e-147 524.2 285 94.0
Thhalv10010608m.g Eutrema salsugineum HOM05D005750 ORTHO05D007126 2.4e-143 512.3 284 89.8
Sp5g08260 Schrenkiella parvula HOM05D005750 ORTHO05D007126 2.0e-142 509.2 284 89.4
BcaC02g09095 Brassica carinata HOM05D005750 ORTHO05D007126 3.2e-140 501.9 286 88.5
BolC4t25415H Brassica oleracea HOM05D005750 ORTHO05D007126 4.2e-140 501.5 283 88.7
C04p38380 Brassica napus HOM05D005750 ORTHO05D007126 9.4e-140 500.4 286 88.5
BcaB02g08472 Brassica carinata HOM05D005750 ORTHO05D007126 1.5e-137 493.0 287 88.2
A09p47130 Brassica napus HOM05D005750 ORTHO05D007126 3.4e-134 481.9 287 85.4
BraA09t40175Z Brassica rapa HOM05D005750 ORTHO05D007126 3.4e-134 481.9 287 85.4
Aa31sc171G20 Aethionema arabicum HOM05D005750 ORTHO05D007126 7.7e-134 480.7 285 86.7
C08p29390 Brassica napus HOM05D005750 ORTHO05D007126 7.7e-134 480.7 287 85.4
BolC8t50540H Brassica oleracea HOM05D005750 ORTHO05D007126 7.7e-134 480.7 287 85.4
A04p05670 Brassica napus HOM05D005750 ORTHO05D007126 1.3e-133 479.9 288 86.5
BraA04t16263Z Brassica rapa HOM05D005750 ORTHO05D007126 2.9e-133 478.8 285 85.6
THA.LOC104823389 Tarenaya hassleriana HOM05D005750 ORTHO05D007126 6.5e-125 451.1 284 81.7
Duzib093G0788 Durio zibethinus HOM05D005750 ORTHO05D007126 1.1e-108 397.1 270 75.6
Duzib128G1738 Durio zibethinus HOM05D005750 ORTHO05D007126 1.1e-108 397.1 268 76.9
Gohir.A01G224900 Gossypium hirsutum HOM05D005750 ORTHO05D007126 1.5e-108 396.7 268 74.6
Gohir.D01G214500 Gossypium hirsutum HOM05D005750 ORTHO05D007126 1.5e-108 396.7 268 74.6
BcaB01g00216 Brassica carinata HOM05D005750 ORTHO05D007126 5.5e-108 394.8 208 89.4
Gorai.002G260600 Gossypium raimondii HOM05D005750 ORTHO05D007126 7.2e-108 394.4 268 74.3
Ciclev10012396m.g Citrus clementina HOM05D005750 ORTHO05D007126 1.6e-107 393.3 283 72.4
Lj3g0021719 Lotus japonicus HOM05D005750 ORTHO05D007126 6.1e-107 391.3 286 72.0
Thecc.05G023200 Theobroma cacao HOM05D005750 ORTHO05D007126 8.0e-107 391.0 281 71.9
CANSAT35G0049 Cannabis sativa HOM05D005750 ORTHO05D007126 1.0e-106 390.6 283 70.0
Lalb_Chr07g0193351 Lupinus albus HOM05D005750 ORTHO05D007126 3.4e-105 385.6 283 72.1
arahy.Tifrunner.gnm1.ann1.CU0EG8 Arachis hypogaea HOM05D005750 ORTHO05D007126 7.5e-105 384.4 284 70.4
COL.COLO4_14617 Corchorus olitorius HOM05D005750 ORTHO05D007126 7.5e-105 384.4 309 65.7
Prupe.6G269800 Prunus persica HOM05D005750 ORTHO05D007126 1.3e-104 383.6 265 75.8
Cpa.g.sc56.104 Carica papaya HOM05D005750 ORTHO05D007126 1.7e-104 383.3 286 70.6
MD12G1159400 Malus domestica HOM05D005750 ORTHO05D007126 2.2e-104 382.9 263 75.7
Dinv37089 Davidia involucrata HOM05D005750 ORTHO05D007126 4.9e-104 381.7 282 71.6
MD04G1146200 Malus domestica HOM05D005750 ORTHO05D007126 4.9e-104 381.7 265 74.7
RcHm_v2.0_Chr3g0463971 Rosa chinensis HOM05D005750 ORTHO05D007126 6.3e-104 381.3 272 72.4
FvH4_6g12170 Fragaria vesca HOM05D005750 ORTHO05D007126 8.3e-104 380.9 282 70.6
FAN09G4178 Fragaria x ananassa HOM05D005750 ORTHO05D007126 8.3e-104 380.9 282 70.6
FAN02G3889 Fragaria x ananassa HOM05D005750 ORTHO05D007126 1.4e-103 380.2 283 70.0
Atru.chr8.2137 Acer truncatum HOM05D005750 ORTHO05D007126 2.4e-103 379.4 261 74.3
FAN14G0046 Fragaria x ananassa HOM05D005750 ORTHO05D007126 2.4e-103 379.4 282 70.2
FAN14G1750 Fragaria x ananassa HOM05D005750 ORTHO05D007126 2.4e-103 379.4 282 70.2
CiPaw.09G205200 Carya illinoinensis HOM05D005750 ORTHO05D007126 7.0e-103 377.9 284 70.4
Dinv35517 Davidia involucrata HOM05D005750 ORTHO05D007126 5.9e-102 374.8 280 69.3
arahy.Tifrunner.gnm1.ann1.2Q187C Arachis hypogaea HOM05D005750 ORTHO05D007126 1.0e-101 374.0 284 68.7
Lj2A78G34 Lonicera japonica HOM05D005750 ORTHO05D007126 2.3e-101 372.9 284 69.0
ClCG10G021760 Citrullus lanatus HOM05D005750 ORTHO05D007126 1.9e-100 369.8 267 73.0
MELO3C009196.2 Cucumis melo HOM05D005750 ORTHO05D007126 1.9e-100 369.8 267 73.0
vmacro20231 Vaccinium macrocarpon HOM05D005750 ORTHO05D007126 1.9e-100 369.8 263 73.0
CsaV3_3G034210 Cucumis sativus L. HOM05D005750 ORTHO05D007126 3.3e-100 369.0 267 72.7
TWI53G0977 Tripterygium wilfordii HOM05D005750 ORTHO05D007126 3.3e-100 369.0 283 69.3
TPR.G5219 Trifolium pratense HOM05D005750 ORTHO05D007126 4.3e-100 368.6 282 70.2
Glyma.01G110900 Glycine max HOM05D005750 ORTHO05D007126 1.2e-99 367.1 283 70.3
Aqoxy1G00732 Aquilegia oxysepala HOM05D005750 ORTHO05D007126 2.1e-99 366.3 274 69.7
VMungo0331G1407 Vigna mungo HOM05D005750 ORTHO05D007126 2.1e-99 366.3 283 69.6
Actinidia13787 Actinidia chinensis HOM05D005750 ORTHO05D007126 4.7e-99 365.2 263 72.2
Sed0027096 Sechium edule HOM05D005750 ORTHO05D007126 4.7e-99 365.2 264 73.5
DCAR_028833 Daucus carota HOM05D005750 ORTHO05D007126 8.0e-99 364.4 287 68.6
TWI74G1070 Tripterygium wilfordii HOM05D005750 ORTHO05D007126 8.0e-99 364.4 283 67.1
CAN.G351.8 Capsicum annuum HOM05D005750 ORTHO05D007126 1.0e-98 364.0 273 70.3
Eucgr.B02764 Eucalyptus grandis HOM05D005750 ORTHO05D007126 1.0e-98 364.0 273 68.1
Manes.09G101500 Manihot esculenta HOM05D005750 ORTHO05D007126 1.0e-98 364.0 284 66.5
Medtr4g014710 Medicago truncatula HOM05D005750 ORTHO05D007126 1.4e-98 363.6 282 68.1
Phvul.010G008000 Phaseolus vulgaris HOM05D005750 ORTHO05D007126 1.4e-98 363.6 283 68.6
Nitab4.5_0000119g0240 Nicotiana tabacum HOM05D005750 ORTHO05D007126 1.8e-98 363.2 280 68.6
Psat7g247000 Pisum sativum HOM05D005750 ORTHO05D007126 2.3e-98 362.8 282 68.1
QL07p036167 Quercus lobata HOM05D005750 ORTHO05D007126 2.3e-98 362.8 282 69.5
CSS0046643 Camellia sinensis var. sinensis HOM05D005750 ORTHO05D007126 3.0e-98 362.5 265 71.7
Potri.016G110300 Populus trichocarpa HOM05D005750 ORTHO05D007126 3.0e-98 362.5 283 67.8
Hund15288 Selenicereus undatus HOM05D005750 ORTHO05D007126 3.0e-98 362.5 278 68.3
MBI14_g32934_MAGBIO Magnolia biondii HOM05D005750 ORTHO05D007126 1.2e-97 360.5 263 70.7
PGR031G0365 Punica granatum HOM05D005750 ORTHO05D007126 1.2e-97 360.5 274 69.0
Ah.11g045300 Amaranthus hybridus HOM05D005750 ORTHO05D007126 2.0e-97 359.8 263 69.6
Peaxi162Scf00014g00091 Petunia axillaris HOM05D005750 ORTHO05D007126 5.7e-97 358.2 269 69.1
EL10Ac5g11550 Beta vulgaris HOM05D005750 ORTHO05D007126 1.7e-96 356.7 265 69.4
TAR636G2178 Trochodendron aralioides HOM05D005750 ORTHO05D007126 3.7e-96 355.5 271 67.9
Sopen10g036170 Solanum pennellii HOM05D005750 ORTHO05D007126 6.4e-96 354.8 265 70.2
Sc01g0006740 Simmondsia chinensis HOM05D005750 ORTHO05D007126 8.3e-96 354.4 265 68.7
AUR62042943 Chenopodium quinoa HOM05D005750 ORTHO05D007126 2.4e-95 352.8 265 69.1
Glyma.03G076500 Glycine max HOM05D005750 ORTHO05D007126 5.4e-95 351.7 297 65.7
GSVIVG01034019001 Vitis vinifera HOM05D005750 ORTHO05D007126 9.2e-95 350.9 287 64.8
Cc06_g01740 Coffea canephora HOM05D005750 ORTHO05D007126 1.2e-94 350.5 268 69.0
PSO384G4196 Papaver somniferum HOM05D005750 ORTHO05D007126 7.8e-94 347.8 263 66.9
PSO339G6575 Papaver somniferum HOM05D005750 ORTHO05D007126 1.0e-93 347.4 262 67.9
TAR623G1708 Trochodendron aralioides HOM05D005750 ORTHO05D007126 1.7e-93 346.7 271 68.3
unitig_46.g18409 Utricularia gibba HOM05D005750 ORTHO05D007126 3.0e-93 345.9 258 69.8
Lsat_1_v5_gn_8_99481 Lactuca sativa HOM05D005750 ORTHO05D007126 5.0e-93 345.1 214 78.5
HanXRQChr16g0510541 Helianthus annuus HOM05D005750 ORTHO05D007126 8.6e-93 344.4 214 78.5
Migut.J00232 Erythranthe guttata HOM05D005750 ORTHO05D007126 1.9e-92 343.2 279 65.2
Oeu004613.2 Olea europaea HOM05D005750 ORTHO05D007126 6.2e-91 338.2 296 61.5
Sed0026182 Sechium edule HOM05D005750 ORTHO05D007126 6.2e-91 338.2 267 66.7
MSTRG.26795 Avicennia marina HOM05D005750 ORTHO05D007126 3.1e-90 335.9 261 67.4
CDE02G4717 Ceratophyllum demersum HOM05D005750 ORTHO05D007126 1.2e-89 334.0 259 65.6
Hma1.2p1_0763F.1_g214560 Hydrangea macrophylla HOM05D005750 ORTHO05D007126 1.2e-89 334.0 280 63.6
Sabra06G0073600 Salix brachista HOM05D005750 ORTHO05D007126 7.5e-89 331.3 326 57.1
Potri.006G095700 Populus trichocarpa HOM05D005750 ORTHO05D007126 3.7e-88 328.9 211 76.3
Os01g0851400 Oryza sativa ssp. japonica HOM05D005750 ORTHO05D007126 4.9e-88 328.6 267 65.9
Rhsim05G0204700 Rhododendron simsii HOM05D005750 ORTHO05D007126 8.3e-88 327.8 294 61.6
Sabra16G0106800 Salix brachista HOM05D005750 ORTHO05D007126 8.3e-88 327.8 284 63.0
Haze_20940 Corylus avellana HOM05D005750 ORTHO05D007126 9.2e-87 324.3 265 65.7
Zm00001eb367490 Zea mays HOM05D005750 ORTHO05D007126 1.6e-86 323.6 273 63.0
SGA_v2.0_scaffold240G44116 Striga asiatica HOM05D005750 ORTHO05D007126 1.7e-85 320.1 278 60.8
Zm00001eb147810 Zea mays HOM05D005750 ORTHO05D007126 2.1e-83 313.2 278 61.9
SEGI_00199 Sequoiadendron giganteum HOM05D005750 ORTHO05D007126 1.4e-82 310.5 274 59.5
Gohir.D04G128250 Gossypium hirsutum HOM05D005750 ORTHO05D007126 1.5e-76 290.4 251 62.5
Actinidia29137 Actinidia chinensis HOM05D005750 ORTHO05D007126 2.3e-74 283.1 239 64.4
Gorai.012G111300 Gossypium raimondii HOM05D005750 ORTHO05D007126 2.0e-73 280.0 251 61.0
CiPaw.10G154000 Carya illinoinensis HOM05D005750 ORTHO05D007126 7.6e-73 278.1 272 57.4
HPP92_018186 Vanilla planifolia HOM05D005750 ORTHO05D007126 1.0e-69 267.7 264 54.5
SGA_v2.0_scaffold85G26769 Striga asiatica HOM05D005750 ORTHO05D007126 1.7e-69 266.9 199 66.3
Ca_23809_v3 Cicer arietinum L. HOM05D005750 ORTHO05D007126 3.3e-68 262.7 199 69.8
TPR.G5190 Trifolium pratense HOM05D005750 ORTHO05D007126 1.2e-67 260.8 237 58.2
ECA236G1744 Erigeron canadensis HOM05D005750 ORTHO05D007126 3.6e-67 259.2 209 65.1
Nn2g13588 Nelumbo nucifera HOM05D005750 ORTHO05D007126 5.4e-63 245.4 182 68.7
CBR_g865 Chara braunii HOM05D005750 ORTHO05D007126 7.3e-60 235.0 278 47.1
AagrBONN_evm.TU.Sc2ySwM_344.3267 Anthoceros agrestis HOM05D005750 ORTHO05D007126 1.6e-59 233.8 209 56.9
AUR62025787 Chenopodium quinoa HOM05D005750 ORTHO05D007126 8.1e-59 231.5 180 66.7
PGSC0003DMG400019130 Solanum tuberosum HOM05D005750 ORTHO05D007126 1.8e-58 230.3 180 67.2
Pp3c7_8520 Physcomitrium patens HOM05D005750 ORTHO05D007126 6.9e-58 228.4 251 47.4
Solyc10g086770.3 Solanum lycopersicum HOM05D005750 ORTHO05D007126 2.4e-55 219.9 180 65.6
SMO203G0145 Selaginella moellendorffii HOM05D005750 ORTHO05D007126 2.1e-51 206.8 170 58.2
Nitab4.5_0006439g0020 Nicotiana tabacum HOM05D005750 ORTHO05D007126 1.5e-44 184.1 116 78.4
Cre11.g475450 Chlamydomonas reinhardtii HOM05D005750 ORTHO05D007126 4.3e-44 182.6 194 48.5
TAR636G1840 Trochodendron aralioides HOM05D005750 ORTHO05D007126 1.6e-35 154.1 230 43.5
MCO10G202 Micromonas commoda HOM05D005750 ORTHO05D007126 2.8e-35 153.3 300 35.7
PRCOL_00002333 Prasinoderma coloniale HOM05D005750 ORTHO05D007126 2.1e-30 137.1 278 34.5
TAR402G0002 Trochodendron aralioides HOM05D005750 ORTHO05D007126 8.7e-29 131.7 88 78.4
Haze_26299 Corylus avellana HOM05D005750 ORTHO05D007126 6.9e-26 122.1 171 38.6
Ca_23812_v3 Cicer arietinum L. HOM05D005750 ORTHO05D007126 2.2e-24 117.1 83 74.7
A04p05660 Brassica napus HOM05D005750 ORTHO05D007126 6.7e-21 105.5 52 94.2
ATR0618G451 Amborella trichopoda HOM05D005750 ORTHO05D007126 4.3e-20 102.8 57 84.2
Nn2g11345 Nelumbo nucifera HOM05D005750 ORTHO05D007126 1.7e-19 100.9 54 87.0
Zm00001eb011730 Zea mays HOM05D005325 ORTHO05D008457 1.2e-09 68.2 180 27.2
Glyma.14G192300 Glycine max HOM05D005325 ORTHO05D008457 2.6e-09 67.0 182 30.8
Glyma.02G225500 Glycine max HOM05D005325 ORTHO05D008457 2.2e-08 63.9 185 28.6
Os03g0265200 Oryza sativa ssp. japonica HOM05D005325 ORTHO05D008457 2.9e-08 63.5 176 27.8
arahy.Tifrunner.gnm1.ann1.VY3BKH Arachis hypogaea HOM05D005325 ORTHO05D008457 3.8e-08 63.2 180 28.9
Cpa.g.sc112.50 Carica papaya HOM05D005325 ORTHO05D008457 3.8e-08 63.2 184 27.7
Aa31LG5G6860 Aethionema arabicum HOM05D005325 ORTHO05D008457 5.0e-08 62.8 176 28.4
Phvul.008G262400 Phaseolus vulgaris HOM05D005325 ORTHO05D008457 5.0e-08 62.8 175 28.6
VMungo0647G2564 Vigna mungo HOM05D005325 ORTHO05D008457 5.0e-08 62.8 175 28.6
arahy.Tifrunner.gnm1.ann1.CQ7B2G Arachis hypogaea HOM05D005325 ORTHO05D008457 6.5e-08 62.4 179 28.5
ATR0618G365 Amborella trichopoda HOM05D005325 ORTHO05D008457 8.5e-08 62.0 173 30.1
ECA248G3745 Erigeron canadensis HOM05D005325 ORTHO05D008457 1.1e-07 61.6 188 29.3
Prupe.6G060500 Prunus persica HOM05D005325 ORTHO05D008457 1.5e-07 61.2 187 28.9
AT2G29640 Arabidopsis thaliana HOM05D005325 ORTHO05D008457 1.9e-07 60.8 152 27.0
PGR119G0476 Punica granatum HOM05D005325 ORTHO05D008457 1.9e-07 60.8 183 26.8
Actinidia25148 Actinidia chinensis HOM05D005325 ORTHO05D008457 2.5e-07 60.5 177 26.6
GSVIVG01024786001 Vitis vinifera HOM05D005325 ORTHO05D008457 2.5e-07 60.5 178 28.1
MSTRG.18491 Avicennia marina HOM05D005325 ORTHO05D008457 4.2e-07 59.7 180 27.8
EL10Ac7g16130 Beta vulgaris HOM05D005325 ORTHO05D008457 7.2e-07 58.9 173 28.3
CSS0007520 Camellia sinensis var. sinensis HOM05D005325 ORTHO05D008457 7.2e-07 58.9 180 27.2
CSS0011737 Camellia sinensis var. sinensis HOM05D005325 ORTHO05D008457 7.2e-07 58.9 180 27.2
LjContig00155g0003403 Lotus japonicus HOM05D005325 ORTHO05D008457 7.2e-07 58.9 177 29.9
MBI14_g04425_MAGBIO Magnolia biondii HOM05D005325 ORTHO05D008457 7.2e-07 58.9 186 26.3
DCAR_007389 Daucus carota HOM05D005325 ORTHO05D008457 9.4e-07 58.5 152 29.6
Lsat_1_v5_gn_5_172281 Lactuca sativa HOM05D005325 ORTHO05D008457 9.4e-07 58.5 178 29.8
Ah.08g220810 Amaranthus hybridus HOM05D005325 ORTHO05D008457 1.2e-06 58.2 177 27.1
CANSAT54G0458 Cannabis sativa HOM05D005325 ORTHO05D008457 1.2e-06 58.2 184 27.7
AL4G24390 Arabidopsis lyrata HOM05D005325 ORTHO05D008457 1.6e-06 57.8 154 27.9
AUR62001679 Chenopodium quinoa HOM05D005325 ORTHO05D008457 2.7e-06 57.0 205 25.9
Psat2g059320 Pisum sativum HOM05D005325 ORTHO05D008457 2.7e-06 57.0 185 28.6
Carub.0004s1073 Capsella rubella HOM05D005325 ORTHO05D008457 4.7e-06 56.2 182 26.9
CAN.G700.24 Capsicum annuum HOM05D005325 ORTHO05D008457 4.7e-06 56.2 178 27.5
AUR62020101 Chenopodium quinoa HOM05D005325 ORTHO05D008457 4.7e-06 56.2 195 26.2
Nitab4.5_0000408g0140 Nicotiana tabacum HOM05D005325 ORTHO05D008457 4.7e-06 56.2 178 26.4
AagrBONN_evm.TU.Sc2ySwM_362.272 Anthoceros agrestis HOM05D005325 ORTHO05D008457 6.1e-06 55.8 189 27.0
Ciclev10029368m.g Citrus clementina HOM05D005325 ORTHO05D008457 8.0e-06 55.5 180 26.1
FvH4_5g19731 Fragaria vesca HOM05D005750 ORTHO05D035649 8.0e-06 55.5 56 57.1
Sp4g12350 Schrenkiella parvula HOM05D005325 ORTHO05D008457 8.0e-06 55.5 176 26.1


User provided reference genes

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