Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G34180 Arabidopsis lyrata HOM05D004374 ORTHO05D005430 1.2e-164 583.2 300 100.0
AL5G21410 Arabidopsis lyrata HOM05D004374 ORTHO05D005430 9.9e-140 500.4 300 86.3
AT3G53270 Arabidopsis thaliana HOM05D004374 ORTHO05D005430 3.3e-135 485.3 300 83.7
Carub.0005s1981 Capsella rubella HOM05D004374 ORTHO05D005430 1.4e-125 453.4 300 77.7
BcaB02g07796 Brassica carinata HOM05D004374 ORTHO05D005430 2.0e-116 422.9 301 74.1
Thhalv10010555m.g Eutrema salsugineum HOM05D004374 ORTHO05D005430 4.5e-116 421.8 303 73.9
BolC6t37295H Brassica oleracea HOM05D004374 ORTHO05D005430 1.4e-114 416.8 305 72.8
C06p21110 Brassica napus HOM05D004374 ORTHO05D005430 1.9e-114 416.4 307 72.3
A07p21500 Brassica napus HOM05D004374 ORTHO05D005430 2.1e-113 412.9 307 71.0
BraA07t29837Z Brassica rapa HOM05D004374 ORTHO05D005430 3.9e-112 408.7 307 70.4
Sp1g13120 Schrenkiella parvula HOM05D004374 ORTHO05D005430 6.7e-112 407.9 313 70.6
Thhalv10000991m.g Eutrema salsugineum HOM05D004374 ORTHO05D005430 1.3e-110 403.7 279 76.7
Carub.0001s3232 Capsella rubella HOM05D004374 ORTHO05D005430 4.8e-102 375.2 301 68.4
Sp5g09070 Schrenkiella parvula HOM05D004374 ORTHO05D005430 5.0e-99 365.2 263 73.8
Aa31LG9G14420 Aethionema arabicum HOM05D004374 ORTHO05D005430 1.6e-97 360.1 327 62.1
THA.LOC104826552 Tarenaya hassleriana HOM05D004374 ORTHO05D005430 1.7e-91 340.1 307 59.3
Cpa.g.sc46.39 Carica papaya HOM05D004374 ORTHO05D005430 2.2e-83 313.2 302 55.3
Ciclev10032301m.g Citrus clementina HOM05D004374 ORTHO05D005430 1.2e-81 307.4 307 54.1
QL02p089838 Quercus lobata HOM05D004374 ORTHO05D005430 1.1e-79 300.8 268 58.2
Ciclev10002076m.g Citrus clementina HOM05D004374 ORTHO05D005430 1.7e-78 297.0 307 51.5
Potri.006G065800 Populus trichocarpa HOM05D004374 ORTHO05D005430 2.8e-78 296.2 271 55.4
Prupe.1G493600 Prunus persica HOM05D004374 ORTHO05D005430 3.7e-78 295.8 311 50.2
Cfa008808 Carpinus fangiana HOM05D004374 ORTHO05D005430 7.0e-77 291.6 268 55.6
Sabra06G0048000 Salix brachista HOM05D004374 ORTHO05D005430 1.2e-76 290.8 305 51.1
Duzib168G1544 Durio zibethinus HOM05D004374 ORTHO05D005430 2.0e-76 290.0 300 51.0
ClCG11G003340 Citrullus lanatus HOM05D004374 ORTHO05D005430 3.5e-76 289.3 301 49.5
Thecc.09G131900 Theobroma cacao HOM05D004374 ORTHO05D005430 4.5e-76 288.9 305 49.8
Manes.06G047300 Manihot esculenta HOM05D004374 ORTHO05D005430 7.7e-76 288.1 293 51.9
CANSAT11G1308 Cannabis sativa HOM05D004374 ORTHO05D005430 1.0e-75 287.7 312 51.6
TWI34G0112 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 1.3e-75 287.3 305 49.2
Atru.chr12.84 Acer truncatum HOM05D004374 ORTHO05D005430 8.5e-75 284.6 300 50.3
TAR626G1960 Trochodendron aralioides HOM05D004374 ORTHO05D005430 8.5e-75 284.6 299 48.5
MD05G1013300 Malus domestica HOM05D004374 ORTHO05D005430 1.5e-74 283.9 299 50.5
Hma1.2p1_0343F.1_g130960 Hydrangea macrophylla HOM05D004374 ORTHO05D005430 2.5e-74 283.1 302 48.7
Sed0026824 Sechium edule HOM05D004374 ORTHO05D005430 4.2e-74 282.3 317 48.3
PGR042G2992 Punica granatum HOM05D004374 ORTHO05D005430 7.2e-74 281.6 310 47.7
TWI34G1386 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 1.2e-73 280.8 307 48.5
CsaV3_2G003190 Cucumis sativus L. HOM05D002754 ORTHO05D003271 2.1e-73 280.0 301 48.5
Rhsim01G0061800 Rhododendron simsii HOM05D004374 ORTHO05D005430 4.7e-73 278.9 288 50.0
Gohir.D05G015500 Gossypium hirsutum HOM05D004374 ORTHO05D005430 1.4e-72 277.3 304 48.4
Hma1.2p1_1220F.1_g268070 Hydrangea macrophylla HOM05D004374 ORTHO05D005430 1.4e-72 277.3 300 48.3
GSVIVG01015588001 Vitis vinifera HOM05D004374 ORTHO05D005430 1.4e-72 277.3 304 50.0
MELO3C004466.2 Cucumis melo HOM05D004374 ORTHO05D005430 1.8e-72 276.9 303 48.2
Gorai.009G015600 Gossypium raimondii HOM05D004374 ORTHO05D005430 3.0e-72 276.2 304 48.0
Lalb_Chr12g0197301 Lupinus albus HOM05D004374 ORTHO05D005430 2.0e-71 273.5 299 48.5
Ca_06940_v3 Cicer arietinum L. HOM05D004374 ORTHO05D005430 3.4e-71 272.7 301 48.8
Dinv41475 Davidia involucrata HOM05D004374 ORTHO05D005430 4.4e-71 272.3 291 47.8
Migut.K00426 Erythranthe guttata HOM05D004374 ORTHO05D005430 4.4e-71 272.3 311 47.3
Medtr4g115320 Medicago truncatula HOM05D004374 ORTHO05D005430 2.2e-70 270.0 284 50.7
arahy.Tifrunner.gnm1.ann1.RD7K84 Arachis hypogaea HOM05D004374 ORTHO05D005430 6.3e-70 268.5 293 48.1
arahy.Tifrunner.gnm1.ann1.QKGT17 Arachis hypogaea HOM05D004374 ORTHO05D005430 1.1e-69 267.7 293 48.1
Lalb_Chr13g0301591 Lupinus albus HOM05D004374 ORTHO05D005430 1.8e-69 266.9 299 49.2
Psat4g038960 Pisum sativum HOM05D004374 ORTHO05D005430 3.1e-69 266.2 300 48.7
HanXRQChr06g0168691 Helianthus annuus HOM05D004374 ORTHO05D005430 2.7e-68 263.1 313 43.5
Haze_11824 Corylus avellana HOM05D004374 ORTHO05D005430 1.0e-67 261.2 308 48.7
TPR.G24785 Trifolium pratense HOM05D004374 ORTHO05D005430 2.9e-67 259.6 270 49.6
ECA240G2062 Erigeron canadensis HOM05D004374 ORTHO05D005430 3.8e-67 259.2 295 45.1
Aqoxy4G00722 Aquilegia oxysepala HOM05D004374 ORTHO05D005430 5.0e-67 258.8 295 45.8
Lj4g0025213 Lotus japonicus HOM05D004374 ORTHO05D005430 1.1e-66 257.7 292 49.3
MSTRG.26430 Avicennia marina HOM05D004374 ORTHO05D005430 3.2e-66 256.1 293 44.7
Glyma.13G159900 Glycine max HOM05D004374 ORTHO05D005430 7.2e-66 255.0 270 48.5
Dinv36480 Davidia involucrata HOM05D004374 ORTHO05D005430 2.7e-65 253.1 269 48.0
SGA_v2.0_scaffold154G37188 Striga asiatica HOM05D004374 ORTHO05D005430 3.6e-65 252.7 270 47.4
TAR383G0672 Trochodendron aralioides HOM05D004374 ORTHO05D005430 3.6e-65 252.7 270 48.5
ATR0307G110 Amborella trichopoda HOM05D004374 ORTHO05D005430 4.7e-65 252.3 275 46.9
SalBow1G4424 Salvia bowleyana HOM05D004374 ORTHO05D005430 4.7e-65 252.3 274 48.5
Peaxi162Scf00088g01332 Petunia axillaris HOM05D004374 ORTHO05D005430 8.0e-65 251.5 301 45.2
SGA_v2.0_scaffold138G35279 Striga asiatica HOM05D004374 ORTHO05D005430 1.4e-64 250.8 277 47.7
Cc06_g08080 Coffea canephora HOM05D004374 ORTHO05D005430 5.2e-64 248.8 279 44.8
Sc18g0000370 Simmondsia chinensis HOM05D004374 ORTHO05D005430 6.8e-64 248.4 268 47.0
vmacro07719 Vaccinium macrocarpon HOM05D004374 ORTHO05D005430 8.8e-64 248.1 407 37.1
Phvul.003G168700 Phaseolus vulgaris HOM05D004374 ORTHO05D005430 2.0e-63 246.9 284 45.4
Nitab4.5_0002008g0060 Nicotiana tabacum HOM05D004374 ORTHO05D005430 3.4e-63 246.1 271 47.6
RcHm_v2.0_Chr2g0138971 Rosa chinensis HOM05D004374 ORTHO05D005430 3.4e-63 246.1 306 46.7
Lsat_1_v5_gn_7_43761 Lactuca sativa HOM05D004374 ORTHO05D005430 5.7e-63 245.4 268 45.9
MBI04_g39649_MAGBIO Magnolia biondii HOM05D004374 ORTHO05D005430 2.2e-62 243.4 283 45.6
Eucgr.C01384 Eucalyptus grandis HOM05D004374 ORTHO05D005430 3.7e-62 242.7 288 45.8
VMungo1215G2312 Vigna mungo HOM05D004374 ORTHO05D005430 3.7e-62 242.7 270 47.0
FAN02G2909 Fragaria x ananassa HOM05D004374 ORTHO05D005430 2.4e-61 240.0 310 45.5
Nn8g39541 Nelumbo nucifera HOM05D004374 ORTHO05D005430 3.1e-61 239.6 308 44.2
FvH4_6g31820 Fragaria vesca HOM05D004374 ORTHO05D005430 1.6e-60 237.3 273 48.0
FAN14G1328 Fragaria x ananassa HOM05D004374 ORTHO05D005430 1.6e-60 237.3 273 48.0
COL.COLO4_35152 Corchorus olitorius HOM05D004374 ORTHO05D005430 2.0e-60 236.9 302 44.4
vmacro15378 Vaccinium macrocarpon HOM05D004374 ORTHO05D005430 2.0e-60 236.9 329 40.1
FAN05G4736 Fragaria x ananassa HOM05D004374 ORTHO05D005430 1.7e-59 233.8 307 45.0
Zm00001eb288690 Zea mays HOM05D004374 ORTHO05D005430 1.7e-59 233.8 288 41.0
FAN09G4040 Fragaria x ananassa HOM05D004374 ORTHO05D005430 2.3e-59 233.4 273 47.6
Sopen07g003820 Solanum pennellii HOM05D004374 ORTHO05D005430 2.9e-59 233.0 268 45.5
Nitab4.5_0009218g0020 Nicotiana tabacum HOM05D004374 ORTHO05D005430 8.6e-59 231.5 319 41.1
AUR62011174 Chenopodium quinoa HOM05D004374 ORTHO05D005430 1.1e-58 231.1 264 43.2
Lj3g0009396 Lotus japonicus HOM05D004374 ORTHO05D005430 1.1e-58 231.1 270 48.9
Zm00001eb030790 Zea mays HOM05D004374 ORTHO05D005430 1.1e-58 231.1 288 40.6
Zm00001eb030830 Zea mays HOM05D004374 ORTHO05D005430 1.1e-58 231.1 288 40.6
AUR62008844 Chenopodium quinoa HOM05D004374 ORTHO05D005430 1.5e-58 230.7 264 44.3
unitig_0.g2039 Utricularia gibba HOM05D004374 ORTHO05D005430 1.5e-58 230.7 348 39.7
EL10Ac8g18718 Beta vulgaris HOM05D004374 ORTHO05D005430 1.9e-58 230.3 271 43.5
AUR62025401 Chenopodium quinoa HOM05D004374 ORTHO05D005430 4.3e-58 229.2 264 44.3
HPP92_026160 Vanilla planifolia HOM05D004374 ORTHO05D005430 5.6e-58 228.8 300 41.3
Medtr3g113180 Medicago truncatula HOM05D004374 ORTHO05D005430 7.3e-58 228.4 283 45.6
Solyc07g007940.3 Solanum lycopersicum HOM05D004374 ORTHO05D005430 7.3e-58 228.4 268 45.1
HPP92_020472 Vanilla planifolia HOM05D004374 ORTHO05D005430 9.5e-58 228.0 300 41.3
CiPaw.05G118700 Carya illinoinensis HOM05D004374 ORTHO05D005430 1.6e-57 227.3 200 57.0
Nitab4.5_0005465g0010 Nicotiana tabacum HOM05D004374 ORTHO05D005430 1.4e-56 224.2 268 45.1
Lj3g0021552 Lotus japonicus HOM05D004374 ORTHO05D005430 2.3e-56 223.4 265 48.3
DCAR_017779 Daucus carota HOM05D004374 ORTHO05D005430 5.2e-56 222.2 293 41.3
Os10g0493800 Oryza sativa ssp. japonica HOM05D004374 ORTHO05D005430 2.6e-55 219.9 300 39.0
PSO478G4198 Papaver somniferum HOM05D004374 ORTHO05D005430 1.2e-52 211.1 232 48.3
CAN.G1315.2 Capsicum annuum HOM05D004374 ORTHO05D005430 1.6e-52 210.7 268 43.3
CAN.G1963.3 Capsicum annuum HOM05D004374 ORTHO05D005430 2.7e-52 209.9 342 37.1
SEGI_33846 Sequoiadendron giganteum HOM05D004374 ORTHO05D005430 9.8e-47 191.4 301 39.2
Gohir.A05G014400 Gossypium hirsutum HOM05D004374 ORTHO05D005430 7.0e-45 185.3 232 43.1
arahy.Tifrunner.gnm1.ann1.9N6VAH Arachis hypogaea HOM05D004374 ORTHO05D005430 2.7e-44 183.3 231 42.9
Lj7A483G16 Lonicera japonica HOM05D004374 ORTHO05D005430 1.3e-43 181.0 193 48.7
PSO384G0227 Papaver somniferum HOM05D004374 ORTHO05D005430 3.0e-43 179.9 221 44.8
CARHR163170 Cardamine hirsuta HOM05D004374 ORTHO05D005430 1.9e-42 177.2 186 56.5
Lj5A680G20 Lonicera japonica HOM05D004374 ORTHO05D005430 9.5e-42 174.9 193 48.2
Hund26613 Selenicereus undatus HOM05D004374 ORTHO05D005430 9.8e-39 164.9 268 35.8
PSO017G1812 Papaver somniferum HOM05D004374 ORTHO05D005430 1.3e-38 164.5 219 42.9
Potri.004G126720 Populus trichocarpa HOM05D004374 ORTHO05D005430 2.3e-35 153.7 159 50.9
CARHR163160 Cardamine hirsuta HOM05D004374 ORTHO05D005430 3.0e-35 153.3 126 67.5
Potri.004G126760 Populus trichocarpa HOM05D004374 ORTHO05D005430 2.8e-33 146.7 200 43.5
SEGI_36985 Sequoiadendron giganteum HOM05D004374 ORTHO05D005430 1.1e-32 144.8 302 32.1
CSS0004446 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 1.8e-32 144.1 153 42.5
PGSC0003DMG400030909 Solanum tuberosum HOM05D004374 ORTHO05D005430 1.2e-31 141.4 258 34.9
arahy.Tifrunner.gnm1.ann1.8FF2M6 Arachis hypogaea HOM05D004374 ORTHO05D005430 1.3e-30 137.9 184 40.8
Oeu032455.1 Olea europaea HOM05D004374 ORTHO05D005430 1.1e-29 134.8 99 60.6
BcaC02g09173 Brassica carinata HOM05D004374 ORTHO05D005430 2.7e-28 130.2 102 69.6
CDE06G2323 Ceratophyllum demersum HOM05D004374 ORTHO05D005430 8.6e-27 125.2 303 29.0
Nitab4.5_0000245g0220 Nicotiana tabacum HOM05D004374 ORTHO05D005430 2.5e-26 123.6 142 47.2
BcaC07g39690 Brassica carinata HOM05D004374 ORTHO05D005430 4.3e-26 122.9 165 46.1
Ah.09g224840 Amaranthus hybridus HOM05D004374 ORTHO05D005430 7.3e-26 122.1 361 25.5
Oeu032454.1 Olea europaea HOM05D004374 ORTHO05D005430 7.3e-26 122.1 135 42.2
Actinidia40498 Actinidia chinensis HOM05D004374 ORTHO05D005430 1.6e-25 120.9 196 36.2
Actinidia21954 Actinidia chinensis HOM05D004374 ORTHO05D005430 2.1e-25 120.6 126 48.4
C04p39300 Brassica napus HOM05D004374 ORTHO05D005430 4.7e-25 119.4 91 71.4
BolC4t25497H Brassica oleracea HOM05D004374 ORTHO05D005430 4.7e-25 119.4 91 71.4
AUR62013310 Chenopodium quinoa HOM05D004374 ORTHO05D005430 2.4e-24 117.1 256 30.1
Actinidia21955 Actinidia chinensis HOM05D004374 ORTHO05D005430 1.5e-23 114.4 86 65.1
PGSC0003DMG400020805 Solanum tuberosum HOM05D004374 ORTHO05D005430 5.8e-23 112.5 153 40.5
Hund26538 Selenicereus undatus HOM05D004374 ORTHO05D005430 1.3e-22 111.3 432 25.2
Pp3c16_3150 Physcomitrium patens HOM05D004374 ORTHO05D005430 2.2e-22 110.5 279 28.3
AagrBONN_evm.TU.Sc2ySwM_228.3625 Anthoceros agrestis HOM05D004374 ORTHO05D005430 4.9e-22 109.4 265 30.6
C08p28500 Brassica napus HOM05D000209 ORTHO05D024195 1.9e-21 107.5 165 42.4
BolC8t50457H Brassica oleracea HOM05D000209 ORTHO05D024195 1.9e-21 107.5 165 42.4
Mapoly0001s0311 Marchantia polymorpha HOM05D004374 ORTHO05D005430 2.7e-20 103.6 266 29.3
C04p05170 Brassica napus HOM05D000111 ORTHO05D000134 2.3e-19 100.5 139 46.8
CAN.G778.6 Capsicum annuum HOM05D004374 ORTHO05D005430 6.6e-19 99.0 201 35.3
Nitab4.5_0000245g0210 Nicotiana tabacum HOM05D004374 ORTHO05D005430 2.5e-18 97.1 134 39.6
BcaB07g32803 Brassica carinata HOM05D000209 ORTHO05D000129 1.6e-17 94.4 61 73.8
CSS0024212 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 6.2e-17 92.4 65 67.7
SHI22473 Sapria himalayana HOM05D004374 ORTHO05D005430 8.1e-17 92.0 66 65.2
TWI09G0688 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 5.3e-16 89.4 121 42.1
A04p15700 Brassica napus HOM05D004374 ORTHO05D040369 2.6e-15 87.0 151 41.1
CSS0020843 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 3.4e-15 86.7 230 28.3
CSS0046554 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 6.4e-14 82.4 61 65.6
SMO358G0132 Selaginella moellendorffii HOM05D004374 ORTHO05D005430 9.3e-13 78.6 225 29.3
Nn8g39548 Nelumbo nucifera HOM05D004374 ORTHO05D005430 1.1e-10 71.6 111 37.8
RcHm_v2.0_Chr6g0296211 Rosa chinensis HOM05D004374 ORTHO05D005430 6.2e-09 65.9 105 44.8
MD15G1345500 Malus domestica HOM05D004374 ORTHO05D005430 4.0e-08 63.2 70 47.1
BraA09t40093Z Brassica rapa HOM05D004374 ORTHO05D005430 1.5e-07 61.2 53 58.5
Lj5C680T4 Lonicera japonica HOM05D004374 ORTHO05D005430 6.4e-06 55.8 119 31.1


User provided reference genes

Program Settings