Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G34120 Arabidopsis lyrata HOM05D001415 ORTHO05D001075 3.2e-26 120.9 58 100.0
AT3G53232 Arabidopsis thaliana HOM05D001415 ORTHO05D001075 1.2e-25 119.0 58 96.6
CARHR163060 Cardamine hirsuta HOM05D001415 ORTHO05D001075 2.2e-19 98.2 56 85.7
Carub.0005s1977 Capsella rubella HOM05D001415 ORTHO05D001075 9.2e-18 92.8 48 91.7
BcaB01g00298 Brassica carinata HOM05D001415 ORTHO05D001075 1.9e-15 85.1 58 70.7
BcaB01g00299 Brassica carinata HOM05D001415 ORTHO05D001075 1.9e-15 85.1 58 70.7
BcaC07g39683 Brassica carinata HOM05D001415 ORTHO05D001075 1.9e-15 85.1 55 72.7
C08p28460 Brassica napus HOM05D001415 ORTHO05D001075 1.9e-15 85.1 55 72.7
BolC8t50454H Brassica oleracea HOM05D001415 ORTHO05D001075 1.9e-15 85.1 55 72.7
A07p21460 Brassica napus HOM05D001415 ORTHO05D001075 4.3e-15 84.0 58 65.5
BraA07t29833Z Brassica rapa HOM05D001415 ORTHO05D001075 4.3e-15 84.0 58 65.5
A09p46240 Brassica napus HOM05D001415 ORTHO05D001075 7.3e-15 83.2 55 70.9
BraA09t40087Z Brassica rapa HOM05D001415 ORTHO05D001075 7.3e-15 83.2 55 70.9
Carub.0004s1883 Capsella rubella HOM05D001415 ORTHO05D001075 3.7e-11 70.9 50 68.0
AT2G36985 Arabidopsis thaliana HOM05D001415 ORTHO05D001075 6.4e-11 70.1 50 68.0
BcaB01g03804 Brassica carinata HOM05D001415 ORTHO05D001075 8.3e-11 69.7 44 70.5
BcaC01g05622 Brassica carinata HOM05D001415 ORTHO05D001075 8.3e-11 69.7 51 66.7
A03p20360 Brassica napus HOM05D001415 ORTHO05D001075 8.3e-11 69.7 51 66.7
C03p23940 Brassica napus HOM05D001415 ORTHO05D001075 8.3e-11 69.7 51 66.7
BraA03t11281Z Brassica rapa HOM05D001415 ORTHO05D001075 1.1e-10 69.3 51 66.7
A05p08830 Brassica napus HOM05D001415 ORTHO05D001075 1.4e-10 68.9 50 68.0
BraA05t19850Z Brassica rapa HOM05D001415 ORTHO05D001075 1.4e-10 68.9 50 68.0
Aa31LG5G22210 Aethionema arabicum HOM05D001415 ORTHO05D001075 1.9e-10 68.6 57 59.6
BcaB06g28964 Brassica carinata HOM05D001415 ORTHO05D001075 1.9e-10 68.6 51 64.7
BolC3t14783H Brassica oleracea HOM05D001415 ORTHO05D001075 2.4e-10 68.2 51 64.7
AL4G33230 Arabidopsis lyrata HOM05D001415 ORTHO05D001075 3.2e-10 67.8 44 68.2
BcaB02g09311 Brassica carinata HOM05D001415 ORTHO05D001075 7.1e-10 66.6 50 68.0
C04p65620 Brassica napus HOM05D001415 ORTHO05D001075 7.1e-10 66.6 51 62.7
BcaC02g07562 Brassica carinata HOM05D001415 ORTHO05D001075 9.2e-10 66.2 50 66.0
BcaC02g07563 Brassica carinata HOM05D001415 ORTHO05D001075 9.2e-10 66.2 50 66.0
BcaC02g07564 Brassica carinata HOM05D001415 ORTHO05D001075 9.2e-10 66.2 50 66.0
A04p28260 Brassica napus HOM05D001415 ORTHO05D001075 1.2e-09 65.9 51 62.7
BolC4t28054H Brassica oleracea HOM05D001415 ORTHO05D001075 1.6e-09 65.5 51 62.7
Gohir.D09G143600 Gossypium hirsutum HOM05D001415 ORTHO05D001075 2.7e-09 64.7 53 60.4
Gorai.006G164900 Gossypium raimondii HOM05D001415 ORTHO05D001075 2.7e-09 64.7 53 60.4
BcaC02g11823 Brassica carinata HOM05D001415 ORTHO05D001075 4.6e-09 63.9 49 61.2
BcaC02g11824 Brassica carinata HOM05D001415 ORTHO05D001075 4.6e-09 63.9 49 61.2
C04p10960 Brassica napus HOM05D001415 ORTHO05D001075 4.6e-09 63.9 49 61.2
BolC4t22690H Brassica oleracea HOM05D001415 ORTHO05D001075 4.6e-09 63.9 49 61.2
CANSAT80G1980 Cannabis sativa HOM05D001415 ORTHO05D001075 4.6e-09 63.9 56 58.9
BcaC02g07565 Brassica carinata HOM05D001415 ORTHO05D001075 6.0e-09 63.5 52 67.3
COL.COLO4_26977 Corchorus olitorius HOM05D001415 ORTHO05D001075 7.8e-09 63.2 52 59.6
Manes.08G009400 Manihot esculenta HOM05D001415 ORTHO05D001075 7.8e-09 63.2 40 67.5
Manes.09G067380 Manihot esculenta HOM05D001415 ORTHO05D001075 1.0e-08 62.8 40 65.0
CiPaw.10G130800 Carya illinoinensis HOM05D001415 ORTHO05D001075 1.3e-08 62.4 38 73.7
Duzib128G1683 Durio zibethinus HOM05D001415 ORTHO05D001075 1.3e-08 62.4 52 59.6
Gohir.A04G072400 Gossypium hirsutum HOM05D001415 ORTHO05D001075 1.3e-08 62.4 35 77.1
Gohir.D04G111000 Gossypium hirsutum HOM05D001415 ORTHO05D001075 1.3e-08 62.4 35 77.1
Gorai.009G415100 Gossypium raimondii HOM05D001415 ORTHO05D001075 1.3e-08 62.4 35 77.1
TWI74G0876 Tripterygium wilfordii HOM05D001415 ORTHO05D001075 1.3e-08 62.4 49 67.3
Gohir.A09G147800 Gossypium hirsutum HOM05D001415 ORTHO05D001075 2.3e-08 61.6 53 58.5
Phvul.001G178700 Phaseolus vulgaris HOM05D001415 ORTHO05D001075 2.3e-08 61.6 39 71.8
Potri.006G125600 Populus trichocarpa HOM05D001415 ORTHO05D001075 5.1e-08 60.5 40 62.5
Gohir.A11G324200 Gossypium hirsutum HOM05D001415 ORTHO05D001075 6.6e-08 60.1 44 59.1
Lalb_Chr25g0289021 Lupinus albus HOM05D001415 ORTHO05D001075 6.6e-08 60.1 34 76.5
Lalb_Chr01g0018721 Lupinus albus HOM05D001415 ORTHO05D001075 8.6e-08 59.7 38 71.1
Lalb_Chr20g0112631 Lupinus albus HOM05D001415 ORTHO05D001075 8.6e-08 59.7 39 69.2
Medtr7g101850 Medicago truncatula HOM05D001415 ORTHO05D001075 8.6e-08 59.7 38 71.1
Glyma.03G182700 Glycine max HOM05D001415 ORTHO05D001075 1.1e-07 59.3 38 71.1
Glyma.19G183200 Glycine max HOM05D001415 ORTHO05D001075 1.1e-07 59.3 38 71.1
Psat3g042400 Pisum sativum HOM05D001415 ORTHO05D001075 1.1e-07 59.3 34 76.5
TPR.G9363 Trifolium pratense HOM05D001415 ORTHO05D001075 1.1e-07 59.3 34 76.5
VMungo0720G3116 Vigna mungo HOM05D001415 ORTHO05D001075 1.1e-07 59.3 34 76.5
Glyma.10G057200 Glycine max HOM05D001415 ORTHO05D001075 1.5e-07 58.9 34 73.5
Gohir.D11G343300 Gossypium hirsutum HOM05D001415 ORTHO05D001075 1.5e-07 58.9 37 67.6
Gorai.007G373400 Gossypium raimondii HOM05D001415 ORTHO05D001075 1.5e-07 58.9 37 67.6
Lj1g0014030 Lotus japonicus HOM05D001415 ORTHO05D001075 1.5e-07 58.9 55 56.4
HanXRQChr14g0454501 Helianthus annuus HOM05D001415 ORTHO05D001075 2.5e-07 58.2 49 57.1
Migut.L01694 Erythranthe guttata HOM05D001415 ORTHO05D001075 3.3e-07 57.8 56 51.8
RcHm_v2.0_Chr3g0470051 Rosa chinensis HOM05D001415 ORTHO05D001075 3.3e-07 57.8 42 57.1
MD04G1094700 Malus domestica HOM05D001415 ORTHO05D001075 4.3e-07 57.4 48 60.4
THA.LOC109116388 Tarenaya hassleriana HOM05D001415 ORTHO05D001075 4.3e-07 57.4 45 64.4
FAN14G2263 Fragaria x ananassa HOM05D001415 ORTHO05D001075 5.6e-07 57.0 41 58.5
Migut.J00518 Erythranthe guttata HOM05D001415 ORTHO05D001075 7.3e-07 56.6 37 67.6
FAN05G3971 Fragaria x ananassa HOM05D001415 ORTHO05D001075 7.3e-07 56.6 37 62.2
Glyma.13G143700 Glycine max HOM05D001415 ORTHO05D001075 1.2e-06 55.8 34 70.6
GSVIVG01025722001 Vitis vinifera HOM05D001415 ORTHO05D001075 1.2e-06 55.8 34 76.5
CAN.G900.45 Capsicum annuum HOM05D001415 ORTHO05D001075 3.6e-06 54.3 35 71.4
DCAR_020825 Daucus carota HOM05D001415 ORTHO05D001075 6.2e-06 53.5 42 57.1
Sed0022297 Sechium edule HOM05D001415 ORTHO05D001075 6.2e-06 53.5 51 54.9
Medtr1g063830 Medicago truncatula HOM05D001415 ORTHO05D001075 8.1e-06 53.1 35 65.7
Nn2g13768 Nelumbo nucifera HOM05D001415 ORTHO05D001075 8.1e-06 53.1 46 54.3
Sed0021325 Sechium edule HOM05D001415 ORTHO05D001075 8.1e-06 53.1 35 68.6
unitig_8.g4710 Utricularia gibba HOM05D001415 ORTHO05D001075 8.1e-06 53.1 40 60.0


User provided reference genes

Program Settings