Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G32680 Arabidopsis lyrata HOM05D006280 ORTHO05D007876 0.0e+00 1145.2 599 100.0
AT3G52115 Arabidopsis thaliana HOM05D006280 ORTHO05D007876 3.2e-283 978.0 605 86.9
Carub.0005s1845 Capsella rubella HOM05D006280 ORTHO05D007876 4.7e-266 921.0 605 81.7
Sp5g10170 Schrenkiella parvula HOM05D006280 ORTHO05D007876 2.3e-233 812.4 610 74.4
CARHR161840 Cardamine hirsuta HOM05D006280 ORTHO05D007876 1.8e-217 759.6 607 70.5
Thhalv10010216m.g Eutrema salsugineum HOM05D006280 ORTHO05D007876 1.9e-206 723.0 611 69.2
Aa31LG10G7200 Aethionema arabicum HOM05D006280 ORTHO05D007876 1.0e-204 717.2 624 67.0
BcaB02g08586 Brassica carinata HOM05D006280 ORTHO05D007876 5.3e-201 704.9 610 67.9
BraA04t16420Z Brassica rapa HOM05D006280 ORTHO05D007876 2.3e-172 609.8 609 61.9
A04p07250 Brassica napus HOM05D006280 ORTHO05D007876 5.1e-172 608.6 609 61.7
BcaC02g09279 Brassica carinata HOM05D006280 ORTHO05D007876 9.7e-171 604.4 611 60.1
C04p40810 Brassica napus HOM05D006280 ORTHO05D007876 9.7e-171 604.4 611 60.1
BolC4t25665H Brassica oleracea HOM05D006280 ORTHO05D007876 9.7e-171 604.4 611 60.1
THA.LOC104802360 Tarenaya hassleriana HOM05D006280 ORTHO05D007876 2.8e-162 576.2 638 56.0
THA.LOC104817627 Tarenaya hassleriana HOM05D006280 ORTHO05D007876 1.6e-160 570.5 635 55.9
Gohir.D11G166400 Gossypium hirsutum HOM05D006280 ORTHO05D007876 2.4e-108 397.1 645 42.3
Gorai.007G177400 Gossypium raimondii HOM05D006280 ORTHO05D007876 2.4e-108 397.1 645 42.3
Gohir.A11G160200 Gossypium hirsutum HOM05D006280 ORTHO05D007876 1.2e-107 394.8 644 41.6
Haze_03235 Corylus avellana HOM05D006280 ORTHO05D007876 2.6e-107 393.7 633 42.7
TWI09G0861 Tripterygium wilfordii HOM05D006280 ORTHO05D007876 2.6e-107 393.7 646 42.4
Cpa.g.sc234.10 Carica papaya HOM05D006280 ORTHO05D007876 5.8e-107 392.5 635 42.8
Thecc.01G413600 Theobroma cacao HOM05D006280 ORTHO05D007876 7.6e-107 392.1 630 42.9
QL04p005292 Quercus lobata HOM05D006280 ORTHO05D007876 5.1e-103 379.4 633 42.2
CiPaw.13G003200 Carya illinoinensis HOM05D006280 ORTHO05D007876 2.8e-101 373.6 641 42.9
CSS0048133 Camellia sinensis var. sinensis HOM05D006280 ORTHO05D007876 2.4e-100 370.5 652 41.0
Duzib268G1473 Durio zibethinus HOM05D006280 ORTHO05D007876 5.3e-100 369.4 639 40.8
Nitab4.5_0003361g0010 Nicotiana tabacum HOM05D006280 ORTHO05D007876 3.8e-98 363.2 693 38.2
MELO3C023535.2 Cucumis melo HOM05D006280 ORTHO05D007876 8.4e-98 362.1 656 41.2
Sc14g0005130 Simmondsia chinensis HOM05D006280 ORTHO05D007876 3.5e-96 356.7 630 38.9
Lj9A629T105 Lonicera japonica HOM05D006280 ORTHO05D007876 1.7e-95 354.4 643 40.1
Sopen01g033930 Solanum pennellii HOM05D006280 ORTHO05D007876 1.7e-95 354.4 690 39.4
Nitab4.5_0001542g0030 Nicotiana tabacum HOM05D006280 ORTHO05D007876 8.7e-95 352.1 698 38.8
TWI73G0538 Tripterygium wilfordii HOM05D006280 ORTHO05D007876 8.7e-95 352.1 652 40.6
CAN.G170.124 Capsicum annuum HOM05D006280 ORTHO05D007876 3.3e-94 350.1 705 38.9
Actinidia20679 Actinidia chinensis HOM05D006280 ORTHO05D007876 5.6e-94 349.4 696 37.5
Peaxi162Scf00428g00816 Petunia axillaris HOM05D006280 ORTHO05D007876 1.6e-93 347.8 681 38.3
PGSC0003DMG400006815 Solanum tuberosum HOM05D006280 ORTHO05D007876 2.1e-93 347.4 696 38.1
MD02G1315100 Malus domestica HOM05D006280 ORTHO05D007876 2.8e-93 347.1 628 39.5
PGR044G1516 Punica granatum HOM05D006280 ORTHO05D007876 9.9e-91 338.6 626 39.5
Potri.001G269700 Populus trichocarpa HOM05D006280 ORTHO05D007876 2.2e-90 337.4 633 37.3
Cc02_g27560 Coffea canephora HOM05D006280 ORTHO05D007876 1.9e-89 334.3 694 37.5
MSTRG.20601 Avicennia marina HOM05D006280 ORTHO05D007876 2.4e-89 334.0 678 36.4
Hund03633 Selenicereus undatus HOM05D006280 ORTHO05D007876 1.6e-88 331.3 643 36.4
Ciclev10030953m.g Citrus clementina HOM05D006280 ORTHO05D007876 5.1e-87 326.2 625 38.6
Hma1.2p1_0280F.1_g112910 Hydrangea macrophylla HOM05D006280 ORTHO05D007876 5.1e-87 326.2 676 38.5
Sabra09G0047500 Salix brachista HOM05D006280 ORTHO05D007876 1.3e-85 321.6 643 37.5
Eucgr.J01260 Eucalyptus grandis HOM05D006280 ORTHO05D007876 2.8e-85 320.5 613 38.8
Prupe.2G009900 Prunus persica HOM05D006280 ORTHO05D007876 3.1e-84 317.0 640 38.9
Migut.B01331 Erythranthe guttata HOM05D006280 ORTHO05D007876 6.9e-84 315.8 687 36.1
FAN03G0134 Fragaria x ananassa HOM05D006280 ORTHO05D007876 6.5e-82 309.3 630 38.1
Lsat_1_v5_gn_4_46080 Lactuca sativa HOM05D006280 ORTHO05D007876 1.1e-81 308.5 635 35.6
Sed0013445 Sechium edule HOM05D006280 ORTHO05D007876 1.4e-81 308.1 636 37.9
EL10Ac6g13519 Beta vulgaris HOM05D006280 ORTHO05D007876 1.2e-80 305.1 688 35.3
AUR62028915 Chenopodium quinoa HOM05D006280 ORTHO05D007876 1.2e-80 305.1 614 36.8
Sed0005202 Sechium edule HOM05D006280 ORTHO05D007876 3.5e-80 303.5 661 37.2
CANSAT01G2414 Cannabis sativa HOM05D006280 ORTHO05D007876 1.8e-79 301.2 632 37.3
SGA_v2.0_scaffold167G38459 Striga asiatica HOM05D006280 ORTHO05D007876 1.1e-78 298.5 677 33.7
ClCG09G004310 Citrullus lanatus HOM05D006280 ORTHO05D007876 1.9e-78 297.7 715 35.0
SalBow7G2237 Salvia bowleyana HOM05D006280 ORTHO05D007876 6.3e-77 292.7 696 35.2
GSVIVG01032060001 Vitis vinifera HOM05D006280 ORTHO05D007876 5.3e-76 289.7 612 37.6
Manes.10G146200 Manihot esculenta HOM05D006280 ORTHO05D007876 9.0e-76 288.9 637 36.1
COL.COLO4_23913 Corchorus olitorius HOM05D006280 ORTHO05D008652 1.0e-74 285.4 600 36.5
SGA_v2.0_scaffold119G32715 Striga asiatica HOM05D006280 ORTHO05D007876 1.3e-74 285.0 674 34.1
HanXRQChr16g0519571 Helianthus annuus HOM05D006280 ORTHO05D007876 5.0e-74 283.1 647 34.9
FvH4_7g00721 Fragaria vesca HOM05D006280 ORTHO05D007876 5.5e-73 279.6 628 36.1
Potri.009G064200 Populus trichocarpa HOM05D006280 ORTHO05D007876 7.2e-73 279.3 601 36.4
MBI01_g40597_MAGBIO Magnolia biondii HOM05D006280 ORTHO05D007876 1.6e-72 278.1 632 34.3
Aqoxy2G00116 Aquilegia oxysepala HOM05D006280 ORTHO05D007876 2.7e-72 277.3 605 35.5
ECA234G4003 Erigeron canadensis HOM05D006280 ORTHO05D007876 2.7e-72 277.3 658 34.3
Solyc01g086930.4 Solanum lycopersicum HOM05D006280 ORTHO05D007876 2.7e-72 277.3 636 36.0
Oeu039119.3 Olea europaea HOM05D006280 ORTHO05D007876 1.8e-71 274.6 701 33.4
FAN10G1835 Fragaria x ananassa HOM05D006280 ORTHO05D007876 3.0e-71 273.9 625 36.0
PSO447G0216 Papaver somniferum HOM05D006280 ORTHO05D007876 5.7e-70 269.6 617 35.5
Nn2g15492 Nelumbo nucifera HOM05D006280 ORTHO05D007876 5.3e-68 263.1 715 32.4
Lalb_Chr03g0033951 Lupinus albus HOM05D006280 ORTHO05D007876 5.9e-67 259.6 628 34.4
AUR62005634 Chenopodium quinoa HOM05D006280 ORTHO05D007876 1.2e-64 251.9 591 34.2
MD07G1006900 Malus domestica HOM05D006280 ORTHO05D007876 2.7e-64 250.8 511 38.4
RcHm_v2.0_Chr1g0314941 Rosa chinensis HOM05D006280 ORTHO05D007876 4.6e-64 250.0 620 34.4
FAN06G1370 Fragaria x ananassa HOM05D006280 ORTHO05D007876 2.2e-61 241.1 571 35.0
Os06g0613400 Oryza sativa ssp. japonica HOM05D006280 ORTHO05D007876 2.8e-61 240.7 637 32.5
QL04p005267 Quercus lobata HOM05D006280 ORTHO05D007876 4.8e-61 240.0 555 35.9
FAN01G3121 Fragaria x ananassa HOM05D006280 ORTHO05D007876 1.2e-59 235.3 688 31.8
Psat4g148560 Pisum sativum HOM05D006280 ORTHO05D007876 4.5e-59 233.4 602 34.6
Zm00001eb388310 Zea mays HOM05D006280 ORTHO05D007876 7.7e-59 232.6 630 34.8
Dinv09375 Davidia involucrata HOM05D006280 ORTHO05D007876 2.9e-58 230.7 313 47.0
PSO210G6454 Papaver somniferum HOM05D006280 ORTHO05D007876 3.8e-58 230.3 314 44.9
Hma1.2p1_0845F.1_g227480 Hydrangea macrophylla HOM05D006280 ORTHO05D007876 1.9e-57 228.0 445 38.7
Ca_23874_v3 Cicer arietinum L. HOM05D006280 ORTHO05D007876 4.2e-57 226.9 603 32.5
FAN01G1556 Fragaria x ananassa HOM05D006280 ORTHO05D007876 1.6e-56 224.9 407 39.6
arahy.Tifrunner.gnm1.ann1.JHR7K6 Arachis hypogaea HOM05D006280 ORTHO05D007876 2.7e-56 224.2 607 31.0
CsaV3_7G031230 Cucumis sativus L. HOM05D006280 ORTHO05D007876 4.7e-56 223.4 428 40.0
TPR.G21742 Trifolium pratense HOM05D006280 ORTHO05D007876 1.4e-55 221.9 601 32.1
Glyma.12G238500 Glycine max HOM05D006280 ORTHO05D007876 4.1e-52 210.3 607 33.4
Medtr8g036940 Medicago truncatula HOM05D006280 ORTHO05D007876 9.1e-52 209.1 604 32.0
Lj3g0014839 Lotus japonicus HOM05D006280 ORTHO05D007876 4.5e-51 206.8 665 30.7
arahy.Tifrunner.gnm1.ann1.0Y513H Arachis hypogaea HOM05D006280 ORTHO05D007876 1.0e-50 205.7 300 41.0
ATR0824G264 Amborella trichopoda HOM05D006280 ORTHO05D007876 2.9e-50 204.1 661 31.9
TAR636G0096 Trochodendron aralioides HOM05D006280 ORTHO05D007876 2.5e-49 201.1 246 48.0
Rhsim01G0130700 Rhododendron simsii HOM05D006280 ORTHO05D007876 2.1e-48 198.0 177 59.9
THA.LOC109117177 Tarenaya hassleriana HOM05D006280 ORTHO05D007876 4.0e-47 193.7 207 57.0
VMungo1127G1733 Vigna mungo HOM05D006280 ORTHO05D007876 5.7e-46 189.9 613 30.7
Glyma.13G204200 Glycine max HOM05D006280 ORTHO05D007876 1.3e-45 188.7 192 54.7
CDE04G2764 Ceratophyllum demersum HOM05D006280 ORTHO05D007876 7.7e-43 179.5 302 39.4
Dinv14267 Davidia involucrata HOM05D006280 ORTHO05D007876 2.9e-42 177.6 463 33.5
Dinv09374 Davidia involucrata HOM05D006280 ORTHO05D007876 3.6e-40 170.6 353 37.1
Rhsim01G0130600 Rhododendron simsii HOM05D006280 ORTHO05D007876 2.3e-39 167.9 445 32.8
Phvul.011G212200 Phaseolus vulgaris HOM05D006280 ORTHO05D007876 1.4e-36 158.7 595 29.9
SEGI_32119 Sequoiadendron giganteum HOM05D006280 ORTHO05D007876 7.7e-35 152.9 675 25.3
Hma1.2p1_0312F.1_g121350 Hydrangea macrophylla HOM05D006280 ORTHO05D007876 1.0e-34 152.5 171 55.6
vmacro21180 Vaccinium macrocarpon HOM05D006280 ORTHO05D007876 5.0e-34 150.2 388 35.3
vmacro21179 Vaccinium macrocarpon HOM05D006280 ORTHO05D007876 1.9e-33 148.3 104 72.1
Dinv14268 Davidia involucrata HOM05D006280 ORTHO05D007876 5.5e-33 146.7 108 69.4
unitig_8.g3859 Utricularia gibba HOM05D006280 ORTHO05D007876 7.2e-33 146.4 466 31.8
TAR636G3118 Trochodendron aralioides HOM05D006280 ORTHO05D007876 2.4e-28 131.3 276 36.6
SMO196G0201 Selaginella moellendorffii HOM05D006280 ORTHO05D007876 2.0e-27 128.3 183 44.3
AagrBONN_evm.TU.Sc2ySwM_117.1753 Anthoceros agrestis HOM05D006280 ORTHO05D007876 1.2e-19 102.4 90 54.4
Mapoly0001s0083 Marchantia polymorpha HOM05D006280 ORTHO05D007876 3.9e-18 97.4 95 49.5
Manes.07G004300 Manihot esculenta HOM05D006280 ORTHO05D007876 6.6e-18 96.7 321 32.1
unitig_8.g3860 Utricularia gibba HOM05D006280 ORTHO05D007876 8.6e-18 96.3 165 41.2
Pp3c16_2140 Physcomitrium patens HOM05D006280 ORTHO05D007876 6.8e-15 86.7 463 25.5
QL04p005379 Quercus lobata HOM05D000011 ORTHO05D007876 1.4e-12 79.0 287 29.6
MSTRG.5009 Avicennia marina HOM05D006280 ORTHO05D007876 5.4e-12 77.0 361 25.5
PSO210G6643 Papaver somniferum HOM05D006280 ORTHO05D007876 5.4e-12 77.0 102 47.1
DCAR_006240 Daucus carota HOM05D006280 ORTHO05D007876 1.6e-11 75.5 196 32.1
MCO05G132 Micromonas commoda HOM05D006280 ORTHO05D007876 4.7e-08 63.9 86 39.5
QL04p005302 Quercus lobata HOM05D006280 ORTHO05D007876 6.8e-07 60.1 179 30.7


User provided reference genes

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