Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G32570 Arabidopsis lyrata HOM05D002214 ORTHO05D007367 5.4e-259 897.1 448 100.0
AT3G52030 Arabidopsis thaliana HOM05D002214 ORTHO05D007367 3.1e-230 801.6 448 90.0
CARHR161660 Cardamine hirsuta HOM05D002214 ORTHO05D007367 3.2e-227 791.6 446 87.7
Carub.0005s1835 Capsella rubella HOM05D002214 ORTHO05D007367 1.7e-220 769.2 445 88.1
A03p48610 Brassica napus HOM05D002214 ORTHO05D007367 1.3e-215 753.1 448 85.0
C07p46730 Brassica napus HOM05D002214 ORTHO05D007367 3.7e-215 751.5 448 84.6
Thhalv10010397m.g Eutrema salsugineum HOM05D002214 ORTHO05D007367 5.3e-214 747.7 449 84.6
Sp5g10260 Schrenkiella parvula HOM05D002214 ORTHO05D007367 5.3e-214 747.7 448 84.6
BcaC06g33377 Brassica carinata HOM05D002214 ORTHO05D007367 5.9e-213 744.2 448 83.9
BolC7t45191H Brassica oleracea HOM05D002214 ORTHO05D007367 7.7e-213 743.8 452 83.6
BcaC06g33020 Brassica carinata HOM05D002214 ORTHO05D007367 2.2e-212 742.3 448 83.7
BraA03t13966Z Brassica rapa HOM05D002214 ORTHO05D007367 1.7e-204 716.1 433 83.4
THA.LOC104817574 Tarenaya hassleriana HOM05D002214 ORTHO05D007367 3.6e-178 628.6 447 69.6
TWI09G0406 Tripterygium wilfordii HOM05D002214 ORTHO05D007367 2.1e-141 506.5 440 58.0
Gorai.004G170100 Gossypium raimondii HOM05D002214 ORTHO05D007367 8.7e-140 501.1 440 56.6
Duzib138G1340 Durio zibethinus HOM05D002214 ORTHO05D007367 1.9e-139 500.0 429 58.0
Manes.07G010800 Manihot esculenta HOM05D002214 ORTHO05D007367 1.9e-139 500.0 446 57.2
Ciclev10031605m.g Citrus clementina HOM05D002214 ORTHO05D007367 1.2e-138 497.3 435 57.5
Gohir.A08G142300 Gossypium hirsutum HOM05D002214 ORTHO05D007367 3.1e-137 492.7 440 55.7
Thecc.01G406200 Theobroma cacao HOM05D002214 ORTHO05D007367 9.0e-137 491.1 440 56.6
CiPaw.14G003400 Carya illinoinensis HOM05D002214 ORTHO05D007367 1.5e-136 490.3 445 54.6
Cfa010812 Carpinus fangiana HOM05D002214 ORTHO05D007367 2.0e-136 490.0 448 54.9
RcHm_v2.0_Chr1g0318361 Rosa chinensis HOM05D002214 ORTHO05D007367 2.9e-135 486.1 442 55.9
GSVIVG01032215001 Vitis vinifera HOM05D002214 ORTHO05D007367 2.9e-135 486.1 445 54.2
Potri.009G056500 Populus trichocarpa HOM05D002214 ORTHO05D007367 1.6e-133 480.3 440 55.7
CANSAT80G0536 Cannabis sativa HOM05D002214 ORTHO05D007367 7.8e-133 478.0 420 54.8
FAN03G2729 Fragaria x ananassa HOM05D002214 ORTHO05D007367 7.8e-133 478.0 445 54.6
FAN10G2270 Fragaria x ananassa HOM05D002214 ORTHO05D007367 1.0e-132 477.6 443 54.4
Sc11g0009040 Simmondsia chinensis HOM05D002214 ORTHO05D007367 6.6e-132 474.9 445 53.9
Eucgr.G03320 Eucalyptus grandis HOM05D002214 ORTHO05D007367 3.3e-131 472.6 427 54.8
Eucgr.G03301 Eucalyptus grandis HOM05D002214 ORTHO05D007367 1.6e-130 470.3 427 54.6
Hma1.2p1_0685F.1_g203260 Hydrangea macrophylla HOM05D002214 ORTHO05D007367 2.4e-129 466.5 440 52.3
Actinidia19424 Actinidia chinensis HOM05D002214 ORTHO05D007367 9.0e-129 464.5 448 51.8
Rhsim07G0058900 Rhododendron simsii HOM05D002214 ORTHO05D007367 3.4e-128 462.6 446 51.6
MD07G1023200 Malus domestica HOM05D002214 ORTHO05D007367 3.2e-126 456.1 448 53.1
Sed0008197 Sechium edule HOM05D002214 ORTHO05D007367 3.9e-124 449.1 438 52.1
CsaV3_7G030710 Cucumis sativus L. HOM05D002214 ORTHO05D007367 2.5e-123 446.4 442 51.1
Aqoxy2G00221 Aquilegia oxysepala HOM05D002214 ORTHO05D007367 3.3e-123 446.0 439 51.5
Nn7g36334 Nelumbo nucifera HOM05D002214 ORTHO05D007367 1.3e-122 444.1 422 51.4
AUR62023095 Chenopodium quinoa HOM05D002214 ORTHO05D007367 2.1e-122 443.4 435 49.2
Lalb_Chr25g0282551 Lupinus albus HOM05D002214 ORTHO05D007367 5.3e-121 438.7 439 51.3
Prupe.2G024000 Prunus persica HOM05D002214 ORTHO05D007367 1.2e-120 437.6 449 51.9
Glyma.11G159230 Glycine max HOM05D002214 ORTHO05D007367 1.3e-119 434.1 425 51.1
Lj3g0007976 Lotus japonicus HOM05D002214 ORTHO05D007367 2.9e-119 433.0 437 50.6
vmacro13697 Vaccinium macrocarpon HOM05D002214 ORTHO05D007367 1.9e-118 430.3 468 48.5
arahy.Tifrunner.gnm1.ann1.IP56PK Arachis hypogaea HOM05D002214 ORTHO05D007367 4.2e-118 429.1 442 49.1
Cc02_g28820 Coffea canephora HOM05D002214 ORTHO05D007367 5.5e-118 428.7 512 43.9
CAN.G909.6 Capsicum annuum HOM05D002214 ORTHO05D007367 3.5e-117 426.0 432 50.5
arahy.Tifrunner.gnm1.ann1.KRTV89 Arachis hypogaea HOM05D002214 ORTHO05D007367 6.0e-117 425.2 442 48.6
Sopen01g034840 Solanum pennellii HOM05D002214 ORTHO05D007367 6.0e-117 425.2 426 50.5
Solyc01g087910.4 Solanum lycopersicum HOM05D002214 ORTHO05D007367 1.3e-116 424.1 430 51.4
Medtr3g034210 Medicago truncatula HOM05D002214 ORTHO05D007367 1.8e-116 423.7 428 50.0
Psat5g212440 Pisum sativum HOM05D002214 ORTHO05D007367 2.3e-116 423.3 437 49.2
Atru.chr11.2515 Acer truncatum HOM05D002214 ORTHO05D007367 3.0e-116 422.9 445 49.4
QL04p010195 Quercus lobata HOM05D002214 ORTHO05D007367 3.9e-116 422.5 460 47.4
Ca_24837_v3 Cicer arietinum L. HOM05D002214 ORTHO05D007367 5.1e-116 422.2 434 49.3
PGR031G3638 Punica granatum HOM05D002214 ORTHO05D007367 5.6e-115 418.7 471 47.3
Phvul.005G035100 Phaseolus vulgaris HOM05D002214 ORTHO05D007367 2.8e-114 416.4 432 49.8
VMungo1217G0001 Vigna mungo HOM05D002214 ORTHO05D007367 1.4e-113 414.1 433 48.3
DCAR_022375 Daucus carota HOM05D002214 ORTHO05D007367 1.8e-113 413.7 425 48.2
TPR.G14558 Trifolium pratense HOM05D002214 ORTHO05D007367 2.0e-112 410.2 426 48.6
Gohir.D08G163300 Gossypium hirsutum HOM05D002214 ORTHO05D007367 2.2e-111 406.8 334 59.0
CSS0000146 Camellia sinensis var. sinensis HOM05D002214 ORTHO05D007367 2.9e-111 406.4 449 48.3
Migut.N01800 Erythranthe guttata HOM05D002214 ORTHO05D007367 3.8e-111 406.0 470 45.1
SGA_v2.0_scaffold5G02954 Striga asiatica HOM05D002214 ORTHO05D007367 6.5e-111 405.2 447 47.9
Lsat_1_v5_gn_7_35840 Lactuca sativa HOM05D002214 ORTHO05D007367 4.6e-109 399.1 444 46.8
TAR633G1256 Trochodendron aralioides HOM05D002214 ORTHO05D007367 4.6e-109 399.1 355 55.2
Peaxi162Scf01270g00126 Petunia axillaris HOM05D002214 ORTHO05D007367 1.4e-105 387.5 441 48.5
PSO339G3363 Papaver somniferum HOM05D002214 ORTHO05D007367 2.4e-105 386.7 457 46.4
FvH4_7g01770 Fragaria vesca HOM05D002214 ORTHO05D007367 1.2e-104 384.4 323 58.8
PSO384G3385 Papaver somniferum HOM05D002214 ORTHO05D007367 2.2e-103 380.2 460 45.9
Ah.16g100650 Amaranthus hybridus HOM05D002214 ORTHO05D007367 1.2e-101 374.4 369 49.6
Nitab4.5_0001244g0060 Nicotiana tabacum HOM05D002214 ORTHO05D007367 2.7e-101 373.2 432 47.5
HPP92_021380 Vanilla planifolia HOM05D002214 ORTHO05D007367 1.5e-99 367.5 427 45.0
ATR0782G063 Amborella trichopoda HOM05D002214 ORTHO05D007367 2.0e-99 367.1 431 45.9
unitig_22.g5896 Utricularia gibba HOM05D002214 ORTHO05D007367 3.3e-99 366.3 440 42.0
ECA236G0637 Erigeron canadensis HOM05D002214 ORTHO05D001664 4.3e-99 365.9 419 46.1
MBI03_g28525_MAGBIO Magnolia biondii HOM05D002214 ORTHO05D007367 9.7e-99 364.8 435 43.9
Dinv07431 Davidia involucrata HOM05D002214 ORTHO05D005113 4.2e-94 349.4 324 55.6
ClCG09G004430 Citrullus lanatus HOM05D002214 ORTHO05D007367 4.7e-93 345.9 391 48.1
Aa31LG10G14890 Aethionema arabicum HOM05D002214 ORTHO05D007367 6.1e-93 345.5 260 67.7
QL04p010150 Quercus lobata HOM05D002214 ORTHO05D007367 5.1e-92 342.4 371 48.5
Zm00001eb091260 Zea mays HOM05D002214 ORTHO05D007367 5.1e-92 342.4 424 41.7
Os11g0182400 Oryza sativa ssp. japonica HOM05D002214 ORTHO05D007367 7.4e-91 338.6 422 41.7
EL10Ac2g04369 Beta vulgaris HOM05D002214 ORTHO05D007367 8.2e-90 335.1 434 41.2
Nitab4.5_0008942g0050 Nicotiana tabacum HOM05D002214 ORTHO05D007367 1.9e-86 323.9 444 42.3
Oeu051405.1 Olea europaea HOM05D002214 ORTHO05D007367 7.0e-81 305.4 327 47.7
FAN24G1013 Fragaria x ananassa HOM05D002214 ORTHO05D007367 1.7e-79 300.8 465 42.4
FvH4_2g17890 Fragaria vesca HOM05D002214 ORTHO05D007367 3.8e-79 299.7 465 42.4
QL04p010068 Quercus lobata HOM05D002214 ORTHO05D007367 2.5e-78 297.0 268 55.2
FAN15G3441 Fragaria x ananassa HOM05D002214 ORTHO05D007367 5.7e-75 285.8 463 40.8
HanXRQChr04g0119861 Helianthus annuus HOM05D002214 ORTHO05D007367 9.7e-75 285.0 296 50.3
FAN24G2408 Fragaria x ananassa HOM05D002214 ORTHO05D007367 1.9e-70 270.8 467 38.5
Haze_03152 Corylus avellana HOM05D002214 ORTHO05D007367 2.7e-69 266.9 431 38.5
SalBow6G2835 Salvia bowleyana HOM05D002214 ORTHO05D007367 6.1e-69 265.8 310 46.8
Haze_03149 Corylus avellana HOM05D002214 ORTHO05D007367 1.4e-68 264.6 431 38.3
AUR62009418 Chenopodium quinoa HOM05D002214 ORTHO05D007367 1.8e-68 264.2 433 33.9
MELO3C023585.2 Cucumis melo HOM05D002214 ORTHO05D007367 3.4e-67 260.0 441 37.6
FAN06G2164 Fragaria x ananassa HOM05D002214 ORTHO05D007367 4.4e-67 259.6 255 53.7
FAN27G1816 Fragaria x ananassa HOM05D002214 ORTHO05D007367 1.3e-66 258.1 462 38.5
FAN27G1164 Fragaria x ananassa HOM05D002214 ORTHO05D007367 2.5e-62 243.8 433 40.9
Cpa.g.sc125.50 Carica papaya HOM05D002214 ORTHO05D007367 4.2e-62 243.0 191 58.1
Cpa.g.sc125.51 Carica papaya HOM05D002214 ORTHO05D007367 6.8e-60 235.7 257 50.2
QL04p010120 Quercus lobata HOM05D002214 ORTHO05D007367 1.2e-56 224.9 219 55.3
RcHm_v2.0_Chr6g0283161 Rosa chinensis HOM05D002214 ORTHO05D007367 8.9e-52 208.8 340 43.5
AagrBONN_evm.TU.Sc2ySwM_344.2511 Anthoceros agrestis HOM05D002214 ORTHO05D007367 6.6e-47 192.6 462 28.6
COL.COLO4_12334 Corchorus olitorius HOM05D000031 ORTHO05D000030 6.2e-45 186.0 354 33.1
FvH4_2g17910 Fragaria vesca HOM05D002214 ORTHO05D007367 1.2e-40 171.8 234 41.5
FAN24G3278 Fragaria x ananassa HOM05D002214 ORTHO05D007367 1.2e-40 171.8 234 41.5
CDE04G0429 Ceratophyllum demersum HOM05D002214 ORTHO05D007367 4.6e-40 169.9 190 41.1
Hund16632 Selenicereus undatus HOM05D002214 ORTHO05D007367 4.6e-40 169.9 166 48.2
Aa31LG10G14900 Aethionema arabicum HOM05D002214 ORTHO05D007367 1.3e-39 168.3 118 70.3
Lj9A641T67 Lonicera japonica HOM05D002214 ORTHO05D007367 1.7e-39 167.9 279 35.1
Pp3c8_19810 Physcomitrium patens HOM05D002214 ORTHO05D007367 1.1e-38 165.2 437 25.2
Hund16633 Selenicereus undatus HOM05D002214 ORTHO05D007367 3.3e-38 163.7 148 52.0
Hma1.2p1_0685F.1_g203270 Hydrangea macrophylla HOM05D002214 ORTHO05D007367 2.1e-37 161.0 149 49.7
MD07G1016900 Malus domestica HOM05D002214 ORTHO05D007367 1.4e-36 158.3 223 39.5
SMO137G0282 Selaginella moellendorffii HOM05D002214 ORTHO05D007367 6.4e-34 149.4 371 31.0
SEGI_30351 Sequoiadendron giganteum HOM05D002214 ORTHO05D007367 7.8e-32 142.5 140 47.1
FAN06G4994 Fragaria x ananassa HOM05D002214 ORTHO05D007367 5.1e-31 139.8 154 46.8
CBR_g46897 Chara braunii HOM05D002214 ORTHO05D007367 1.8e-28 131.3 397 26.7
Thecc.01G405700 Theobroma cacao HOM05D002214 ORTHO05D007367 1.9e-25 121.3 108 54.6
Mapoly0009s0234 Marchantia polymorpha HOM05D002214 ORTHO05D007367 7.8e-24 115.9 319 27.0
Thecc.01G405800 Theobroma cacao HOM05D002214 ORTHO05D007367 5.6e-22 109.8 83 62.7
SEGI_07097 Sequoiadendron giganteum HOM05D002214 ORTHO05D007367 2.8e-21 107.5 134 41.0
Duzib133G0745 Durio zibethinus HOM05D002214 ORTHO05D007367 7.1e-17 92.8 83 54.2
Oeu016638.1 Olea europaea HOM05D002214 ORTHO05D007367 3.9e-15 87.0 103 42.7
Hma1.2p1_0685F.1_g203250 Hydrangea macrophylla HOM05D002214 ORTHO05D007367 9.6e-14 82.4 112 36.6
FAN27G0150 Fragaria x ananassa HOM05D002214 ORTHO05D007367 1.9e-09 68.2 139 30.9
FAN27G0866 Fragaria x ananassa HOM05D002214 ORTHO05D007367 3.5e-08 63.9 75 42.7
Lj9C641T18 Lonicera japonica HOM05D002214 ORTHO05D007367 3.9e-07 60.5 137 32.8
CDE04G1985 Ceratophyllum demersum HOM05D002214 ORTHO05D007367 4.3e-06 57.0 60 50.0


User provided reference genes

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