Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G31690 Arabidopsis lyrata HOM05D004480 ORTHO05D005546 1.6e-242 842.4 453 100.0
AT3G51270 Arabidopsis thaliana HOM05D004480 ORTHO05D005546 1.7e-220 769.2 462 91.1
Carub.0005s1764 Capsella rubella HOM05D004480 ORTHO05D005546 1.6e-218 762.7 458 91.3
BcaB01g00536 Brassica carinata HOM05D004480 ORTHO05D005546 3.6e-218 761.5 458 89.3
Sp5g10950 Schrenkiella parvula HOM05D004480 ORTHO05D005546 3.6e-218 761.5 464 88.1
A03p48230 Brassica napus HOM05D004480 ORTHO05D005546 4.7e-218 761.1 458 88.4
BraA03t13931Z Brassica rapa HOM05D004480 ORTHO05D005546 2.0e-216 755.7 464 86.9
BcaC06g33042 Brassica carinata HOM05D004480 ORTHO05D005546 5.7e-216 754.2 455 86.4
C07p46260 Brassica napus HOM05D004480 ORTHO05D005546 1.3e-215 753.1 456 87.7
BraA09t39892Z Brassica rapa HOM05D004480 ORTHO05D005546 3.1e-214 748.4 462 87.4
A09p44300 Brassica napus HOM05D004480 ORTHO05D005546 2.7e-213 745.3 455 87.9
BcaNung06395 Brassica carinata HOM05D004480 ORTHO05D005546 4.5e-213 744.6 453 88.3
C01p29210 Brassica napus HOM05D004480 ORTHO05D005546 4.5e-213 744.6 453 88.3
A01p23550 Brassica napus HOM05D004480 ORTHO05D005546 1.0e-212 743.4 457 87.5
BraA01t02261Z Brassica rapa HOM05D004480 ORTHO05D005546 7.3e-211 737.3 468 84.8
BolC1t02850H Brassica oleracea HOM05D004480 ORTHO05D005546 8.0e-210 733.8 470 84.3
Thhalv10010355m.g Eutrema salsugineum HOM05D004480 ORTHO05D005546 2.7e-205 718.8 464 83.6
BcaNung00392 Brassica carinata HOM05D004480 ORTHO05D005546 6.6e-204 714.1 457 86.4
CARHR160850 Cardamine hirsuta HOM05D004480 ORTHO05D005546 2.8e-202 708.8 465 85.4
C08p26540 Brassica napus HOM05D004480 ORTHO05D005546 5.8e-200 701.0 464 83.0
BolC8t50268H Brassica oleracea HOM05D004480 ORTHO05D005546 3.7e-199 698.4 477 81.6
BolC7t45142H Brassica oleracea HOM05D004480 ORTHO05D005546 1.0e-196 690.3 453 82.8
THA.LOC104827565 Tarenaya hassleriana HOM05D004480 ORTHO05D005546 6.8e-185 651.0 470 76.8
Aa31LG1G7840 Aethionema arabicum HOM05D004480 ORTHO05D005546 2.5e-179 632.5 446 80.5
BcaC09g50090 Brassica carinata HOM05D004480 ORTHO05D005546 3.6e-178 628.6 408 82.6
Manes.17G005700 Manihot esculenta HOM05D004480 ORTHO05D005546 2.9e-175 619.0 474 69.8
MD01G1035500 Malus domestica HOM05D004480 ORTHO05D005546 4.2e-174 615.1 474 70.3
FAN01G1951 Fragaria x ananassa HOM05D004480 ORTHO05D005546 7.1e-174 614.4 467 70.9
MD15G1320300 Malus domestica HOM05D004480 ORTHO05D005546 9.3e-174 614.0 473 69.6
Prupe.5G084300 Prunus persica HOM05D004480 ORTHO05D005546 1.6e-173 613.2 489 67.9
RcHm_v2.0_Chr1g0334711 Rosa chinensis HOM05D004480 ORTHO05D005546 1.6e-173 613.2 471 69.4
Sed0006001 Sechium edule HOM05D004480 ORTHO05D005546 2.1e-173 612.8 474 68.8
FAN03G0050 Fragaria x ananassa HOM05D004480 ORTHO05D005546 4.6e-173 611.7 475 69.1
Thecc.05G221800 Theobroma cacao HOM05D004480 ORTHO05D005546 1.3e-172 610.1 470 70.2
THA.LOC104802357 Tarenaya hassleriana HOM05D004480 ORTHO05D005546 1.7e-172 609.8 462 76.0
RcHm_v2.0_Chr7g0210541 Rosa chinensis HOM05D004480 ORTHO05D005546 3.0e-172 609.0 471 69.0
SalBow1G2458 Salvia bowleyana HOM05D004480 ORTHO05D005546 3.0e-172 609.0 463 71.3
SGA_v2.0_scaffold19G08907 Striga asiatica HOM05D004480 ORTHO05D005546 3.0e-172 609.0 479 68.3
Gohir.A08G013400 Gossypium hirsutum HOM05D004480 ORTHO05D005546 5.1e-172 608.2 467 70.2
CsaV3_3G003300 Cucumis sativus L. HOM05D004480 ORTHO05D005546 6.6e-172 607.8 475 69.3
FAN06G1845 Fragaria x ananassa HOM05D004480 ORTHO05D005546 6.6e-172 607.8 458 70.3
Gohir.D08G023800 Gossypium hirsutum HOM05D004480 ORTHO05D005546 8.7e-172 607.4 467 70.4
QL11p020579 Quercus lobata HOM05D004480 ORTHO05D005546 1.1e-171 607.1 468 69.7
Migut.N03010 Erythranthe guttata HOM05D004480 ORTHO05D005546 2.5e-171 605.9 469 70.6
CiPaw.01G203500 Carya illinoinensis HOM05D004480 ORTHO05D005546 3.3e-171 605.5 476 68.1
MELO3C013997.2 Cucumis melo HOM05D004480 ORTHO05D005546 4.3e-171 605.1 475 68.6
Gorai.004G019100 Gossypium raimondii HOM05D004480 ORTHO05D005546 1.3e-170 603.6 467 69.8
Hma1.2p1_0513F.1_g169740 Hydrangea macrophylla HOM05D004480 ORTHO05D005546 3.6e-170 602.1 474 69.4
Duzib128G0969 Durio zibethinus HOM05D004480 ORTHO05D005546 4.8e-170 601.7 457 69.6
SGA_v2.0_scaffold25G11023 Striga asiatica HOM05D004480 ORTHO05D005546 1.4e-169 600.1 496 66.1
Ciclev10008180m.g Citrus clementina HOM05D004480 ORTHO05D005546 3.1e-169 599.0 473 69.3
MSTRG.22059 Avicennia marina HOM05D004480 ORTHO05D005546 9.0e-169 597.4 494 65.4
Cfa008538 Carpinus fangiana HOM05D004480 ORTHO05D005546 1.5e-168 596.7 477 66.9
GSVIVG01038269001 Vitis vinifera HOM05D004480 ORTHO05D005546 2.0e-168 596.3 470 67.7
Cc03_g16200 Coffea canephora HOM05D004480 ORTHO05D005546 2.6e-168 595.9 468 68.8
Nn7g35785 Nelumbo nucifera HOM05D004480 ORTHO05D005546 3.4e-168 595.5 472 67.6
arahy.Tifrunner.gnm1.ann1.0BX3U4 Arachis hypogaea HOM05D004480 ORTHO05D005546 9.9e-168 594.0 467 68.7
PGR119G0799 Punica granatum HOM05D004480 ORTHO05D005546 2.9e-167 592.4 466 68.2
Sopen01g003100 Solanum pennellii HOM05D004480 ORTHO05D005546 2.9e-167 592.4 464 69.6
PGSC0003DMG400021321 Solanum tuberosum HOM05D004480 ORTHO05D005546 2.9e-167 592.4 463 71.1
Potri.017G001100 Populus trichocarpa HOM05D004480 ORTHO05D005546 3.8e-167 592.0 472 68.4
FvH4_4g10760 Fragaria vesca HOM05D004480 ORTHO05D005546 6.4e-167 591.3 456 68.2
FAN12G3644 Fragaria x ananassa HOM05D004480 ORTHO05D005546 8.4e-167 590.9 456 68.0
Sc03g0007800 Simmondsia chinensis HOM05D004480 ORTHO05D005546 8.4e-167 590.9 456 69.5
CSS0010781 Camellia sinensis var. sinensis HOM05D004480 ORTHO05D005546 1.1e-166 590.5 471 68.2
PGR083G0026 Punica granatum HOM05D004480 ORTHO05D005546 1.9e-166 589.7 464 68.1
SalBow6G1632 Salvia bowleyana HOM05D004480 ORTHO05D005546 2.4e-166 589.3 468 70.9
Atru.chr11.1453 Acer truncatum HOM05D004480 ORTHO05D005546 3.2e-166 589.0 467 68.3
Atru.chr11.1483 Acer truncatum HOM05D004480 ORTHO05D005546 3.2e-166 589.0 467 68.3
Actinidia18384 Actinidia chinensis HOM05D004480 ORTHO05D005546 7.1e-166 587.8 473 66.0
FAN12G1968 Fragaria x ananassa HOM05D004480 ORTHO05D005546 1.2e-165 587.0 446 69.1
Glyma.18G043300 Glycine max HOM05D004480 ORTHO05D005546 4.6e-165 585.1 464 68.1
Sed0005158 Sechium edule HOM05D004480 ORTHO05D005546 1.0e-164 583.9 380 76.8
CANSAT21G2297 Cannabis sativa HOM05D004480 ORTHO05D005546 1.3e-164 583.6 471 67.5
Eucgr.H00240 Eucalyptus grandis HOM05D004480 ORTHO05D005546 1.8e-164 583.2 469 66.3
Hund12181 Selenicereus undatus HOM05D004480 ORTHO05D005546 2.3e-164 582.8 471 67.5
Nitab4.5_0002844g0040 Nicotiana tabacum HOM05D004480 ORTHO05D005546 3.0e-164 582.4 472 66.5
Solyc01g007120.3 Solanum lycopersicum HOM05D004480 ORTHO05D005546 3.9e-164 582.0 460 68.0
HanXRQChr15g0465141 Helianthus annuus HOM05D004480 ORTHO05D005546 5.1e-164 581.6 461 70.7
HanXRQChr14g0458331 Helianthus annuus HOM05D004480 ORTHO05D005546 6.7e-164 581.3 461 70.7
Ca_17076_v3 Cicer arietinum L. HOM05D004480 ORTHO05D005546 8.7e-164 580.9 463 68.3
TAR626G1520 Trochodendron aralioides HOM05D004480 ORTHO05D005546 5.6e-163 578.2 506 63.4
Phvul.001G227600 Phaseolus vulgaris HOM05D004480 ORTHO05D005546 7.4e-163 577.8 461 68.5
vmacro20035 Vaccinium macrocarpon HOM05D004480 ORTHO05D005546 7.4e-163 577.8 481 66.3
Dinv41802 Davidia involucrata HOM05D004480 ORTHO05D005546 6.2e-162 574.7 388 76.0
Lj1g0018422 Lotus japonicus HOM05D004480 ORTHO05D005546 1.8e-161 573.2 467 65.5
Lalb_Chr08g0233091 Lupinus albus HOM05D004480 ORTHO05D005546 1.8e-161 573.2 470 68.1
MBI07_g30868_MAGBIO Magnolia biondii HOM05D004480 ORTHO05D005546 1.8e-161 573.2 496 61.5
Oeu019179.1 Olea europaea HOM05D004480 ORTHO05D005546 2.4e-161 572.8 524 60.5
TAR623G1647 Trochodendron aralioides HOM05D004480 ORTHO05D005546 2.4e-161 572.8 506 64.0
vmacro00734 Vaccinium macrocarpon HOM05D004480 ORTHO05D005546 4.0e-161 572.0 513 62.6
TWI74G1000 Tripterygium wilfordii HOM05D004480 ORTHO05D005546 2.6e-160 569.3 476 66.0
Peaxi162Scf00586g00512 Petunia axillaris HOM05D004480 ORTHO05D005546 3.4e-160 568.9 453 68.7
FAN10G1488 Fragaria x ananassa HOM05D004480 ORTHO05D005546 4.5e-160 568.5 458 67.7
TPR.G4936 Trifolium pratense HOM05D004480 ORTHO05D005546 7.6e-160 567.8 466 68.5
FvH4_7g06440 Fragaria vesca HOM05D004480 ORTHO05D005546 1.7e-159 566.6 383 74.4
Medtr4g094615 Medicago truncatula HOM05D004480 ORTHO05D005546 2.2e-159 566.2 469 66.1
ECA248G1292 Erigeron canadensis HOM05D004480 ORTHO05D005546 2.9e-159 565.8 446 68.4
Glyma.11G213400 Glycine max HOM05D004480 ORTHO05D005546 2.7e-157 559.3 345 79.7
Nitab4.5_0002686g0020 Nicotiana tabacum HOM05D004480 ORTHO05D005546 2.7e-157 559.3 472 65.7
Os01g0888700 Oryza sativa ssp. japonica HOM05D004480 ORTHO05D005546 4.6e-157 558.5 484 64.0
Sabra17G0005500 Salix brachista HOM05D000001 ORTHO05D005546 1.0e-156 557.4 533 57.6
HanXRQChr15g0464981 Helianthus annuus HOM05D004480 ORTHO05D005546 2.3e-156 556.2 330 82.4
Zm00001eb145320 Zea mays HOM05D004480 ORTHO05D005546 3.0e-156 555.8 468 65.6
DCAR_011737 Daucus carota HOM05D004480 ORTHO05D005546 1.1e-155 553.9 520 60.2
Dinv39175 Davidia involucrata HOM05D004480 ORTHO05D005546 1.5e-155 553.5 450 66.7
VMungo1383G0315 Vigna mungo HOM05D004480 ORTHO05D005546 1.5e-155 553.5 463 65.2
arahy.Tifrunner.gnm1.ann1.JT43NG Arachis hypogaea HOM05D004480 ORTHO05D005546 2.5e-155 552.7 467 65.7
Psat7g090480 Pisum sativum HOM05D004480 ORTHO05D005546 4.3e-155 552.0 393 72.5
Zm00001eb365940 Zea mays HOM05D004480 ORTHO05D005546 7.4e-155 551.2 473 64.7
ATR0743G007 Amborella trichopoda HOM05D004480 ORTHO05D005546 2.8e-154 549.3 488 61.1
VMungo1309G1911 Vigna mungo HOM05D004480 ORTHO05D005546 3.4e-152 542.3 460 65.0
PSO675G8718 Papaver somniferum HOM05D004480 ORTHO05D005546 1.6e-149 533.5 454 65.2
Cpa.g.sc9.237 Carica papaya HOM05D004480 ORTHO05D005546 3.5e-149 532.3 457 66.3
PSO732G0488 Papaver somniferum HOM05D004480 ORTHO05D005546 1.8e-148 530.0 454 64.8
COL.COLO4_23990 Corchorus olitorius HOM05D004480 ORTHO05D005546 5.1e-148 528.5 462 64.3
Haze_11102 Corylus avellana HOM05D004480 ORTHO05D005546 1.4e-145 520.4 458 61.4
Rhsim09G0001300 Rhododendron simsii HOM05D004480 ORTHO05D005546 6.9e-145 518.1 435 65.1
Oeu061379.1 Olea europaea HOM05D004480 ORTHO05D005546 5.0e-143 511.9 274 88.7
CAN.G574.17 Capsicum annuum HOM05D004480 ORTHO05D005546 8.5e-143 511.1 428 67.8
Lju124A7T24 Lonicera japonica HOM05D004480 ORTHO05D005546 1.6e-141 506.9 279 86.0
Lsat_1_v5_gn_5_33821 Lactuca sativa HOM05D004480 ORTHO05D005546 1.4e-140 503.8 467 62.3
unitig_62.g23773 Utricularia gibba HOM05D004480 ORTHO05D005546 3.9e-140 502.3 493 58.6
Mapoly0052s0036 Marchantia polymorpha HOM05D004480 ORTHO05D005546 3.3e-139 499.2 453 57.0
AUR62001702 Chenopodium quinoa HOM05D004480 ORTHO05D005546 9.7e-139 497.7 455 60.9
Duzib177G0198 Durio zibethinus HOM05D004480 ORTHO05D005546 1.5e-136 490.3 404 67.1
Pp3c20_22360 Physcomitrium patens HOM05D004480 ORTHO05D005546 1.7e-135 486.9 458 59.6
SMO203G0211 Selaginella moellendorffii HOM05D004480 ORTHO05D005546 1.7e-135 486.9 331 71.0
AagrBONN_evm.TU.Sc2ySwM_228.3019 Anthoceros agrestis HOM05D004480 ORTHO05D005546 1.4e-132 477.2 328 69.8
CDE02G2467 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 2.2e-130 469.9 471 55.0
Aqoxy2G00126 Aquilegia oxysepala HOM05D004480 ORTHO05D005546 3.7e-130 469.2 495 54.7
CDE09G0719 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 1.3e-127 460.7 394 62.4
SHI53263 Sapria himalayana HOM05D004480 ORTHO05D005546 2.0e-123 446.8 334 68.3
ClCG00G001030 Citrullus lanatus HOM05D004480 ORTHO05D005546 4.8e-122 442.2 419 59.9
CBR_g22944 Chara braunii HOM05D004480 ORTHO05D005546 8.2e-122 441.4 281 72.6
CDE02G0168 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 2.1e-117 426.8 359 61.0
CDE09G0674 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 4.7e-117 425.6 444 56.8
ClCG10G003270 Citrullus lanatus HOM05D004480 ORTHO05D005546 2.3e-116 423.3 564 50.4
CDE09G1409 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 2.1e-109 400.2 437 54.5
AUR62020079 Chenopodium quinoa HOM05D004480 ORTHO05D005546 5.2e-108 395.6 467 52.2
PRCOL_00001861 Prasinoderma coloniale HOM05D004480 ORTHO05D005546 4.7e-101 372.5 327 55.7
MCO09G317 Micromonas commoda HOM05D004480 ORTHO05D005546 5.2e-100 369.0 335 56.1
CDE09G0134 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 4.1e-97 359.4 286 64.0
SEGI_41177 Sequoiadendron giganteum HOM05D004480 ORTHO05D005546 3.3e-94 349.7 381 53.5
Migut.O00494 Erythranthe guttata HOM05D004480 ORTHO05D005546 1.7e-82 310.8 167 92.2
Cre03.g159900 Chlamydomonas reinhardtii HOM05D004480 ORTHO05D005546 3.1e-76 290.0 258 57.4
Ciclev10020879m.g Citrus clementina HOM05D004480 ORTHO05D005546 8.7e-55 218.8 474 39.0
Cfa009489 Carpinus fangiana HOM05D004480 ORTHO05D005546 4.0e-52 209.9 382 35.9
SMO327G0006 Selaginella moellendorffii HOM05D004480 ORTHO05D005546 4.8e-37 159.8 120 67.5
HPP92_020625 Vanilla planifolia HOM05D004480 ORTHO05D005546 5.3e-36 156.4 243 46.9
ClCG00G000020 Citrullus lanatus HOM05D004480 ORTHO05D005546 2.0e-35 154.5 395 32.4
SEGI_14248 Sequoiadendron giganteum HOM05D004480 ORTHO05D005546 6.3e-29 132.9 81 77.8
Zm00001eb233680 Zea mays HOM05D009386 ORTHO05D011419 8.2e-29 132.5 168 47.6
Zm00001eb393850 Zea mays HOM05D009386 ORTHO05D011419 6.3e-21 106.3 101 55.4
Zm00001eb011520 Zea mays HOM05D009386 ORTHO05D011419 1.8e-20 104.8 142 45.8
FAN07G0363 Fragaria x ananassa HOM05D004480 ORTHO05D005546 2.9e-18 97.4 197 37.6
Lju124A7T25 Lonicera japonica HOM05D004480 ORTHO05D005546 4.5e-11 73.6 193 33.7
Oeu061378.1 Olea europaea HOM05D004480 ORTHO05D005546 4.5e-11 73.6 184 37.0


User provided reference genes

Program Settings