Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G26710 Arabidopsis lyrata HOM05D011101 ORTHO05D013180 2.4e-88 328.9 184 100.0
AT3G47480 Arabidopsis thaliana HOM05D011101 ORTHO05D013180 9.2e-80 300.4 182 93.4
CARHR156120 Cardamine hirsuta HOM05D011101 ORTHO05D013180 1.7e-73 279.6 184 89.7
Thhalv10011004m.g Eutrema salsugineum HOM05D011101 ORTHO05D013180 2.5e-69 265.8 183 85.8
BcaB01g00919 Brassica carinata HOM05D011101 ORTHO05D013180 6.2e-68 261.2 182 77.5
A06p20170 Brassica napus HOM05D011101 ORTHO05D013180 4.0e-67 258.5 182 80.8
BcaC01g01820 Brassica carinata HOM05D011101 ORTHO05D013180 1.2e-66 256.9 182 79.7
C03p71620 Brassica napus HOM05D011101 ORTHO05D013180 1.2e-66 256.9 182 79.7
BolC3t19453H Brassica oleracea HOM05D011101 ORTHO05D013180 1.2e-66 256.9 182 79.7
BraA06t25101Z Brassica rapa HOM05D011101 ORTHO05D013180 4.4e-66 255.0 182 80.2
BcaB02g10698 Brassica carinata HOM05D011101 ORTHO05D013180 7.6e-66 254.2 183 82.0
A06p27180 Brassica napus HOM05D011101 ORTHO05D013180 9.3e-64 247.3 184 82.1
BraA06t25660Z Brassica rapa HOM05D011101 ORTHO05D013180 2.7e-63 245.7 184 81.5
Sp5g14400 Schrenkiella parvula HOM05D011101 ORTHO05D013180 4.6e-63 245.0 185 79.5
Carub.0005s1357 Capsella rubella HOM05D011101 ORTHO05D013180 2.3e-62 242.7 158 86.7
BcaC01g02277 Brassica carinata HOM05D011101 ORTHO05D013180 5.3e-51 204.9 183 67.8
C03p67100 Brassica napus HOM05D011101 ORTHO05D013180 6.7e-38 161.4 183 58.5
BolC3t18991H Brassica oleracea HOM05D011101 ORTHO05D013180 6.7e-38 161.4 183 58.5
Actinidia35004 Actinidia chinensis HOM05D002107 ORTHO05D002067 4.8e-12 75.5 118 40.7
CSS0038574 Camellia sinensis var. sinensis HOM05D002107 ORTHO05D002067 1.1e-11 74.3 119 47.1
Ciclev10022426m.g Citrus clementina HOM05D002107 ORTHO05D002067 5.3e-11 72.0 181 32.6
MD06G1194700 Malus domestica HOM05D002107 ORTHO05D002067 5.3e-11 72.0 73 61.6
Cfa018931 Carpinus fangiana HOM05D002107 ORTHO05D002067 9.1e-11 71.2 108 47.2
FvH4_5g14810 Fragaria vesca HOM05D002107 ORTHO05D002067 2.6e-10 69.7 193 36.8
Haze_07315 Corylus avellana HOM05D002107 ORTHO05D002067 5.9e-10 68.6 89 55.1
FAN18G3479 Fragaria x ananassa HOM05D002107 ORTHO05D002067 5.9e-10 68.6 200 36.0
Prupe.5G194800 Prunus persica HOM05D002107 ORTHO05D002067 5.9e-10 68.6 95 53.7
Cpa.g.sc111.15 Carica papaya HOM05D002107 ORTHO05D002067 1.3e-09 67.4 186 37.1
Duzib205G1175 Durio zibethinus HOM05D002107 ORTHO05D002067 1.3e-09 67.4 203 36.5
MD00G1125300 Malus domestica HOM05D002107 ORTHO05D002067 1.7e-09 67.0 77 46.8
Prupe.3G266000 Prunus persica HOM05D002107 ORTHO05D002067 2.2e-09 66.6 77 59.7
Duzib084G0513 Durio zibethinus HOM05D002107 ORTHO05D002067 3.8e-09 65.9 196 36.7
BraA04t16902Z Brassica rapa HOM05D002107 ORTHO05D002067 5.0e-09 65.5 95 41.1
FAN05G5651 Fragaria x ananassa HOM05D002107 ORTHO05D002067 5.0e-09 65.5 97 50.5
FAN08G2822 Fragaria x ananassa HOM05D002107 ORTHO05D002067 5.0e-09 65.5 200 35.0
Ca_18827_v3 Cicer arietinum L. HOM05D002107 ORTHO05D002067 1.1e-08 64.3 94 40.4
Ca_30086_v3 Cicer arietinum L. HOM05D002107 ORTHO05D002067 1.1e-08 64.3 94 40.4
DCAR_005558 Daucus carota HOM05D002107 ORTHO05D002067 1.1e-08 64.3 95 45.3
Glyma.14G170400 Glycine max HOM05D002107 ORTHO05D002067 1.1e-08 64.3 69 46.4
Sed0018974 Sechium edule HOM05D002107 ORTHO05D002067 1.1e-08 64.3 112 47.3
Thecc.04G084400 Theobroma cacao HOM05D002107 ORTHO05D002067 1.1e-08 64.3 95 43.2
A04p12390 Brassica napus HOM05D002107 ORTHO05D002067 1.5e-08 63.9 149 32.9
C04p46070 Brassica napus HOM05D002107 ORTHO05D002067 1.5e-08 63.9 149 32.9
BolC4t26192H Brassica oleracea HOM05D002107 ORTHO05D002067 1.5e-08 63.9 149 32.9
SalBow1G3475 Salvia bowleyana HOM05D002107 ORTHO05D002067 1.5e-08 63.9 77 42.9
SalBow1G4949 Salvia bowleyana HOM05D002107 ORTHO05D002067 1.5e-08 63.9 77 42.9
MELO3C001988.2 Cucumis melo HOM05D002107 ORTHO05D002067 1.9e-08 63.5 119 35.3
Actinidia19036 Actinidia chinensis HOM05D002107 ORTHO05D002067 2.5e-08 63.2 70 50.0
Aa31LG2G4190 Aethionema arabicum HOM05D002107 ORTHO05D002067 2.5e-08 63.2 113 37.2
Lj5C110T20 Lonicera japonica HOM05D002107 ORTHO05D002067 2.5e-08 63.2 93 41.9
PGR083G0276 Punica granatum HOM05D002107 ORTHO05D002067 2.5e-08 63.2 84 53.6
THA.LOC104805475 Tarenaya hassleriana HOM05D002107 ORTHO05D002067 2.5e-08 63.2 96 41.7
Medtr7g011010 Medicago truncatula HOM05D002107 ORTHO05D002067 3.2e-08 62.8 165 39.4
Lsat_1_v5_gn_1_14080 Lactuca sativa HOM05D002107 ORTHO05D002067 4.2e-08 62.4 122 35.2
CARHR262620 Cardamine hirsuta HOM05D002107 ORTHO05D002067 5.5e-08 62.0 95 40.0
CiPaw.04G016200 Carya illinoinensis HOM05D002107 ORTHO05D002067 5.5e-08 62.0 92 41.3
Psat7g135920 Pisum sativum HOM05D002107 ORTHO05D002067 5.5e-08 62.0 70 47.1
Sp7g02340 Schrenkiella parvula HOM05D002107 ORTHO05D002067 5.5e-08 62.0 95 40.0
CSS0013301 Camellia sinensis var. sinensis HOM05D002107 ORTHO05D002067 7.2e-08 61.6 95 38.9
CANSAT64G0045 Cannabis sativa HOM05D002107 ORTHO05D002067 7.2e-08 61.6 112 33.9
Hma1.2p1_0795F.1_g218960 Hydrangea macrophylla HOM05D002107 ORTHO05D002067 7.2e-08 61.6 69 47.8
PSO170G1488 Papaver somniferum HOM05D002107 ORTHO05D002067 7.2e-08 61.6 189 39.2
TPR.G5396 Trifolium pratense HOM05D002107 ORTHO05D002067 7.2e-08 61.6 156 39.7
TWI32G0278 Tripterygium wilfordii HOM05D002107 ORTHO05D002067 7.2e-08 61.6 71 47.9
BcaC08g44426 Brassica carinata HOM05D002107 ORTHO05D002067 9.4e-08 61.2 95 38.9
C06p18630 Brassica napus HOM05D002107 ORTHO05D002067 9.4e-08 61.2 95 38.9
BolC6t37076H Brassica oleracea HOM05D002107 ORTHO05D002067 9.4e-08 61.2 95 38.9
CiPaw.05G133300 Carya illinoinensis HOM05D002107 ORTHO05D002067 9.4e-08 61.2 133 34.6
FAN13G1730 Fragaria x ananassa HOM05D002107 ORTHO05D002067 9.4e-08 61.2 191 34.0
MD09G1052700 Malus domestica HOM05D002107 ORTHO05D002067 9.4e-08 61.2 77 58.4
Solyc02g067220.4 Solanum lycopersicum HOM05D002107 ORTHO05D002067 9.4e-08 61.2 64 50.0
PGSC0003DMG400025131 Solanum tuberosum HOM05D002107 ORTHO05D002067 9.4e-08 61.2 79 44.3
SGA_v2.0_scaffold413G51189 Striga asiatica HOM05D002107 ORTHO05D002067 9.4e-08 61.2 79 59.5
ClCG04G012200 Citrullus lanatus HOM05D002107 ORTHO05D002067 1.2e-07 60.8 116 44.0
Glyma.18G260700 Glycine max HOM05D002107 ORTHO05D002067 1.2e-07 60.8 95 51.6
Lsat_1_v5_gn_8_51200 Lactuca sativa HOM05D002107 ORTHO05D002067 1.2e-07 60.8 89 44.9
Sopen02g016400 Solanum pennellii HOM05D002107 ORTHO05D002067 1.2e-07 60.8 61 52.5
AL7G50640 Arabidopsis lyrata HOM05D002107 ORTHO05D002067 1.6e-07 60.5 95 38.9
Lj4P111T48 Lonicera japonica HOM05D002107 ORTHO05D002067 1.6e-07 60.5 95 54.7
vmacro17534 Vaccinium macrocarpon HOM05D002107 ORTHO05D002067 1.6e-07 60.5 113 45.1
AT5G39670 Arabidopsis thaliana HOM05D002107 ORTHO05D002067 2.1e-07 60.1 95 37.9
Gohir.A05G366900 Gossypium hirsutum HOM05D002107 ORTHO05D002067 2.1e-07 60.1 69 46.4
Nitab4.5_0000568g0010 Nicotiana tabacum HOM05D002107 ORTHO05D002067 2.1e-07 60.1 88 54.5
Psat3g200360 Pisum sativum HOM05D002107 ORTHO05D002067 2.1e-07 60.1 73 49.3
Dinv34141 Davidia involucrata HOM05D002107 ORTHO05D002067 2.7e-07 59.7 69 65.2
FAN09G2398 Fragaria x ananassa HOM05D002107 ORTHO05D002067 2.7e-07 59.7 95 48.4
MBI05_g10775_MAGBIO Magnolia biondii HOM05D002107 ORTHO05D002067 2.7e-07 59.7 119 44.5
Ca_02904_v3 Cicer arietinum L. HOM05D002107 ORTHO05D002067 3.6e-07 59.3 161 37.9
Eucgr.B00519 Eucalyptus grandis HOM05D002107 ORTHO05D002067 3.6e-07 59.3 216 31.5
Thhalv10028351m.g Eutrema salsugineum HOM05D002107 ORTHO05D002067 3.6e-07 59.3 95 38.9
FvH4_6g48240 Fragaria vesca HOM05D002107 ORTHO05D002067 3.6e-07 59.3 95 48.4
FAN02G0855 Fragaria x ananassa HOM05D002107 ORTHO05D002067 3.6e-07 59.3 95 48.4
FAN05G0674 Fragaria x ananassa HOM05D002107 ORTHO05D002067 3.6e-07 59.3 95 48.4
FAN14G4105 Fragaria x ananassa HOM05D002107 ORTHO05D002067 3.6e-07 59.3 95 48.4
Gohir.A12G178250 Gossypium hirsutum HOM05D002107 ORTHO05D002067 3.6e-07 59.3 182 32.4
Gohir.D11G074300 Gossypium hirsutum HOM05D002107 ORTHO05D002067 3.6e-07 59.3 197 37.6
Rhsim08G0154100 Rhododendron simsii HOM05D002107 ORTHO05D002067 3.6e-07 59.3 88 40.9
TAR374G0829 Trochodendron aralioides HOM05D002107 ORTHO05D002067 3.6e-07 59.3 197 36.5
Actinidia38765 Actinidia chinensis HOM05D000556 ORTHO05D002067 4.7e-07 58.9 89 42.7
CSS0029813 Camellia sinensis var. sinensis HOM05D002107 ORTHO05D002067 4.7e-07 58.9 95 52.6
Dinv33764 Davidia involucrata HOM05D002107 ORTHO05D002067 4.7e-07 58.9 67 55.2
Nn4g23202 Nelumbo nucifera HOM05D002107 ORTHO05D002067 4.7e-07 58.9 113 31.0
QL10p017195 Quercus lobata HOM05D002107 ORTHO05D002067 4.7e-07 58.9 207 39.6
Solyc02g088090.1 Solanum lycopersicum HOM05D002107 ORTHO05D002067 4.7e-07 58.9 76 51.3
A09p03890 Brassica napus HOM05D002107 ORTHO05D002067 6.1e-07 58.5 95 40.0
BraA09t36026Z Brassica rapa HOM05D002107 ORTHO05D002067 6.1e-07 58.5 95 40.0
Cc07_g03480 Coffea canephora HOM05D002107 ORTHO05D002067 6.1e-07 58.5 95 34.7
Gorai.008G193900 Gossypium raimondii HOM05D002107 ORTHO05D002067 6.1e-07 58.5 179 31.8
HanXRQChr12g0362211 Helianthus annuus HOM05D002107 ORTHO05D002067 6.1e-07 58.5 64 67.2
SalBow3G1393 Salvia bowleyana HOM05D002107 ORTHO05D002067 6.1e-07 58.5 65 46.2
A07p20070 Brassica napus HOM05D002107 ORTHO05D002067 8.0e-07 58.2 95 37.9
BraA07t29706Z Brassica rapa HOM05D002107 ORTHO05D002067 8.0e-07 58.2 95 37.9
Gohir.D04G047800 Gossypium hirsutum HOM05D002107 ORTHO05D002067 8.0e-07 58.2 69 44.9
Gorai.012G053200 Gossypium raimondii HOM05D002107 ORTHO05D002067 8.0e-07 58.2 69 44.9
HanXRQChr16g0503101 Helianthus annuus HOM05D002107 ORTHO05D002067 8.0e-07 58.2 66 40.9
Medtr4g082050 Medicago truncatula HOM05D002107 ORTHO05D002067 8.0e-07 58.2 68 47.1
TWI34G1788 Tripterygium wilfordii HOM05D002107 ORTHO05D002067 8.0e-07 58.2 196 33.7
BcaB02g07973 Brassica carinata HOM05D002107 ORTHO05D002067 1.0e-06 57.8 95 36.8
CAN.G206.162 Capsicum annuum HOM05D002107 ORTHO05D002067 1.0e-06 57.8 108 44.4
Gorai.012G053700 Gossypium raimondii HOM05D002107 ORTHO05D002067 1.0e-06 57.8 69 43.5
HanXRQChr07g0199331 Helianthus annuus HOM05D002107 ORTHO05D002067 1.0e-06 57.8 66 60.6
PSO017G4518 Papaver somniferum HOM05D002107 ORTHO05D002067 1.0e-06 57.8 90 52.2
AUR62039791 Chenopodium quinoa HOM05D002107 ORTHO05D002067 1.4e-06 57.4 65 63.1
Duzib264G1091 Durio zibethinus HOM05D002107 ORTHO05D002067 1.4e-06 57.4 69 59.4
Glyma.20G034200 Glycine max HOM05D002107 ORTHO05D002067 1.4e-06 57.4 83 42.2
Sp2g17630 Schrenkiella parvula HOM05D002107 ORTHO05D002067 1.4e-06 57.4 94 40.4
unitig_0.g1797 Utricularia gibba HOM05D002107 ORTHO05D002067 1.4e-06 57.4 95 36.8
HPP92_004332 Vanilla planifolia HOM05D002107 ORTHO05D002067 1.4e-06 57.4 130 35.4
BcaC04g23853 Brassica carinata HOM05D002107 ORTHO05D002067 1.8e-06 57.0 95 40.0
C09p04120 Brassica napus HOM05D002107 ORTHO05D002067 1.8e-06 57.0 95 40.0
BolC9t53342H Brassica oleracea HOM05D002107 ORTHO05D002067 1.8e-06 57.0 95 40.0
CSS0005295 Camellia sinensis var. sinensis HOM05D002107 ORTHO05D002067 1.8e-06 57.0 169 32.5
Carub.0007s3628 Capsella rubella HOM05D002107 ORTHO05D002067 1.8e-06 57.0 93 38.7
COL.COLO4_36694 Corchorus olitorius HOM05D002107 ORTHO05D002067 1.8e-06 57.0 185 36.8
Migut.H00932 Erythranthe guttata HOM05D002107 ORTHO05D002067 1.8e-06 57.0 67 61.2
Gohir.D04G048200 Gossypium hirsutum HOM05D002107 ORTHO05D002067 1.8e-06 57.0 96 39.6
Hma1.2p1_0409F.1_g146870 Hydrangea macrophylla HOM05D002107 ORTHO05D002067 1.8e-06 57.0 204 30.9
Nitab4.5_0000212g0050 Nicotiana tabacum HOM05D002107 ORTHO05D002067 1.8e-06 57.0 91 40.7
Potri.008G087900 Populus trichocarpa HOM05D002107 ORTHO05D002067 1.8e-06 57.0 81 38.3
AL5G18860 Arabidopsis lyrata HOM05D002107 ORTHO05D002067 2.3e-06 56.6 130 32.3
Migut.K01318 Erythranthe guttata HOM05D002107 ORTHO05D002067 2.3e-06 56.6 71 60.6
Eucgr.K02482 Eucalyptus grandis HOM05D002107 ORTHO05D002067 2.3e-06 56.6 143 34.3
Gohir.A04G147000 Gossypium hirsutum HOM05D002107 ORTHO05D002067 2.3e-06 56.6 153 31.4
Lj3P1036T18 Lonicera japonica HOM05D002107 ORTHO05D002067 2.3e-06 56.6 81 55.6
Lalb_Chr09g0329251 Lupinus albus HOM05D002107 ORTHO05D002067 2.3e-06 56.6 108 39.8
Manes.01G034900 Manihot esculenta HOM05D002107 ORTHO05D002067 2.3e-06 56.6 101 38.6
Nitab4.5_0002980g0030 Nicotiana tabacum HOM05D002107 ORTHO05D002067 2.3e-06 56.6 88 42.0
Peaxi162Scf00451g00071 Petunia axillaris HOM05D002107 ORTHO05D002067 2.3e-06 56.6 63 54.0
Psat0ss2585g0440 Pisum sativum HOM05D002107 ORTHO05D002067 2.3e-06 56.6 160 37.5
CAN.G587.5 Capsicum annuum HOM05D023403 ORTHO05D022180 3.0e-06 56.2 65 44.6
FvH4_4g31200 Fragaria vesca HOM05D002107 ORTHO05D002067 3.0e-06 56.2 113 35.4
FAN12G0510 Fragaria x ananassa HOM05D002107 ORTHO05D002067 3.0e-06 56.2 113 35.4
Lsat_1_v5_gn_2_87480 Lactuca sativa HOM05D002107 ORTHO05D002067 3.0e-06 56.2 66 65.2
Manes.01G092300 Manihot esculenta HOM05D002107 ORTHO05D002067 3.0e-06 56.2 95 38.9
PGR083G0803 Punica granatum HOM05D002107 ORTHO05D002067 3.0e-06 56.2 89 40.4
Actinidia26225 Actinidia chinensis HOM05D002107 ORTHO05D002067 4.0e-06 55.8 109 47.7
Actinidia38783 Actinidia chinensis HOM05D002107 ORTHO05D002067 4.0e-06 55.8 89 41.6
CARHR152090 Cardamine hirsuta HOM05D002107 ORTHO05D002067 4.0e-06 55.8 93 39.8
Ciclev10002774m.g Citrus clementina HOM05D000227 ORTHO05D000451 4.0e-06 55.8 102 36.3
Gohir.A09G014700 Gossypium hirsutum HOM05D002107 ORTHO05D002067 4.0e-06 55.8 88 40.9
Atru.chr11.1768 Acer truncatum HOM05D002107 ORTHO05D002067 5.2e-06 55.5 160 31.9
Ca_21248_v3 Cicer arietinum L. HOM05D002107 ORTHO05D002067 5.2e-06 55.5 173 32.4
ClCG09G018130 Citrullus lanatus HOM05D002107 ORTHO05D002067 5.2e-06 55.5 64 42.2
DCAR_016566 Daucus carota HOM05D002107 ORTHO05D002067 5.2e-06 55.5 102 37.3
AL9U11650 Arabidopsis lyrata HOM05D000135 ORTHO05D000203 6.7e-06 55.1 93 35.5
AT4G12860 Arabidopsis thaliana HOM05D000135 ORTHO05D000203 6.7e-06 55.1 93 35.5
MSTRG.4436 Avicennia marina HOM05D002107 ORTHO05D002067 6.7e-06 55.1 97 49.5
BcaC02g08844 Brassica carinata HOM05D002107 ORTHO05D002067 6.7e-06 55.1 99 36.4
C04p49890 Brassica napus HOM05D002107 ORTHO05D002067 6.7e-06 55.1 99 36.4
CsaV3_1G005550 Cucumis sativus L. HOM05D002107 ORTHO05D002067 6.7e-06 55.1 199 36.2
DCAR_011089 Daucus carota HOM05D002107 ORTHO05D002067 6.7e-06 55.1 79 54.4
Eucgr.K02486 Eucalyptus grandis HOM05D002107 ORTHO05D002067 6.7e-06 55.1 95 40.0
Gohir.D09G013301 Gossypium hirsutum HOM05D002107 ORTHO05D002067 6.7e-06 55.1 88 42.0
Gohir.D12G180650 Gossypium hirsutum HOM05D002107 ORTHO05D002067 6.7e-06 55.1 179 30.2
Gorai.006G015300 Gossypium raimondii HOM05D002107 ORTHO05D002067 6.7e-06 55.1 88 42.0
Manes.09G153600 Manihot esculenta HOM05D000227 ORTHO05D000451 6.7e-06 55.1 101 34.7
Prupe.1G276100 Prunus persica HOM05D002107 ORTHO05D002067 6.7e-06 55.1 132 44.7
AUR62034428 Chenopodium quinoa HOM05D002107 ORTHO05D002067 8.8e-06 54.7 46 58.7
AUR62039789 Chenopodium quinoa HOM05D002107 ORTHO05D002067 8.8e-06 54.7 46 58.7
AUR62039790 Chenopodium quinoa HOM05D002107 ORTHO05D002067 8.8e-06 54.7 46 58.7
Gorai.007G079700 Gossypium raimondii HOM05D002107 ORTHO05D002067 8.8e-06 54.7 197 36.5
HanXRQChr14g0449811 Helianthus annuus HOM05D002107 ORTHO05D002067 8.8e-06 54.7 137 42.3
Lalb_Chr05g0220321 Lupinus albus HOM05D002107 ORTHO05D002067 8.8e-06 54.7 68 60.3
Oeu027849.1 Olea europaea HOM05D002107 ORTHO05D002067 8.8e-06 54.7 77 42.9


User provided reference genes

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