Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G23790 Arabidopsis lyrata HOM05D004188 ORTHO05D004445 2.8e-73 278.9 182 100.0
AT3G45230 Arabidopsis thaliana HOM05D004188 ORTHO05D004445 5.4e-48 194.9 182 83.0
A06p21540 Brassica napus HOM05D004188 ORTHO05D004445 2.6e-42 176.0 187 64.7
BcaB01g01101 Brassica carinata HOM05D004188 ORTHO05D004445 5.4e-40 168.3 181 69.6
BraA06t25239Z Brassica rapa HOM05D004188 ORTHO05D004445 1.2e-39 167.2 187 65.8
Carub.0005s1101 Capsella rubella HOM05D004188 ORTHO05D004445 2.1e-39 166.4 186 75.3
BcaC01g01980 Brassica carinata HOM05D004188 ORTHO05D004445 3.0e-38 162.5 180 68.3
C03p69850 Brassica napus HOM05D004188 ORTHO05D004445 3.0e-38 162.5 180 68.3
BolC3t19246H Brassica oleracea HOM05D004188 ORTHO05D004445 3.0e-38 162.5 180 68.3
Thhalv10002916m.g Eutrema salsugineum HOM05D004188 ORTHO05D004445 1.9e-37 159.8 175 69.7
Aa31LG4G14540 Aethionema arabicum HOM05D004188 ORTHO05D004445 5.6e-29 131.7 183 66.1
CARHR150740 Cardamine hirsuta HOM05D004188 ORTHO05D004445 5.4e-24 115.2 72 86.1
THA.LOC104810856 Tarenaya hassleriana HOM05D004188 ORTHO05D004445 2.2e-17 93.2 187 55.1
CANSAT54G2412 Cannabis sativa HOM05D004188 ORTHO05D004445 6.4e-17 91.7 69 68.1
Gohir.D03G134100 Gossypium hirsutum HOM05D004188 ORTHO05D004445 3.2e-16 89.4 171 45.6
Gorai.003G141200 Gossypium raimondii HOM05D004188 ORTHO05D004445 4.2e-16 89.0 171 45.6
BcaB01g04664 Brassica carinata HOM05D004188 ORTHO05D004445 3.5e-15 85.9 183 41.5
Gohir.A03G034200 Gossypium hirsutum HOM05D004188 ORTHO05D004445 1.8e-14 83.6 155 47.1
Duzib168G0960 Durio zibethinus HOM05D004188 ORTHO05D004445 5.1e-14 82.0 185 43.2
Prupe.6G101100 Prunus persica HOM05D004188 ORTHO05D004445 1.9e-13 80.1 73 65.8
Thhalv10015987m.g Eutrema salsugineum HOM05D004188 ORTHO05D004445 2.5e-13 79.7 183 39.3
A10p17820 Brassica napus HOM05D004188 ORTHO05D004445 9.6e-13 77.8 73 56.2
BcaB08g36360 Brassica carinata HOM05D004188 ORTHO05D004445 1.3e-12 77.4 73 54.8
A03p11070 Brassica napus HOM05D004188 ORTHO05D004445 2.1e-12 76.6 74 60.8
BraA03t10421Z Brassica rapa HOM05D004188 ORTHO05D004445 2.1e-12 76.6 74 60.8
Cc01_g11150 Coffea canephora HOM05D004188 ORTHO05D004445 2.8e-12 76.3 72 54.2
BraA10t43861Z Brassica rapa HOM05D004188 ORTHO05D004445 4.8e-12 75.5 73 54.8
EL10Ac9g22513 Beta vulgaris HOM05D004188 ORTHO05D004445 6.2e-12 75.1 68 58.8
RcHm_v2.0_Chr5g0059401 Rosa chinensis HOM05D004188 ORTHO05D004445 6.2e-12 75.1 70 58.6
PGSC0003DMG400008124 Solanum tuberosum HOM05D004188 ORTHO05D004445 8.1e-12 74.7 68 57.4
Gohir.D05G102200 Gossypium hirsutum HOM05D004188 ORTHO05D004445 1.4e-11 73.9 179 39.1
Lsat_1_v5_gn_6_46020 Lactuca sativa HOM05D004188 ORTHO05D004445 1.8e-11 73.6 67 58.2
PGSC0003DMG400029164 Solanum tuberosum HOM05D004188 ORTHO05D004445 2.4e-11 73.2 73 60.3
CsaV3_6G013900 Cucumis sativus L. HOM05D004188 ORTHO05D004445 3.1e-11 72.8 68 57.4
C03p12760 Brassica napus HOM05D004188 ORTHO05D004445 4.0e-11 72.4 74 56.8
Nitab4.5_0012712g0020 Nicotiana tabacum HOM05D004188 ORTHO05D004445 4.0e-11 72.4 152 49.3
Nitab4.5_0011114g0020 Nicotiana tabacum HOM05D004188 ORTHO05D004445 5.3e-11 72.0 56 67.9
ClCG02G021140 Citrullus lanatus HOM05D004188 ORTHO05D004445 6.9e-11 71.6 55 69.1
MELO3C025771.2 Cucumis melo HOM05D004188 ORTHO05D004445 6.9e-11 71.6 72 55.6
Solyc06g016790.3 Solanum lycopersicum HOM05D004188 ORTHO05D004445 9.0e-11 71.2 179 37.4
THA.LOC104799503 Tarenaya hassleriana HOM05D004188 ORTHO05D004445 1.2e-10 70.9 179 46.9
MSTRG.21125 Avicennia marina HOM05D004188 ORTHO05D004445 1.5e-10 70.5 62 64.5
Rhsim01G0217000 Rhododendron simsii HOM05D004188 ORTHO05D004445 2.0e-10 70.1 46 69.6
CAN.G920.1 Capsicum annuum HOM05D004188 ORTHO05D004445 2.6e-10 69.7 67 58.2
Sopen06g005740 Solanum pennellii HOM05D004188 ORTHO05D004445 2.6e-10 69.7 73 56.2
MBI10_g41700_MAGBIO Magnolia biondii HOM05D004188 ORTHO05D004445 3.4e-10 69.3 55 65.5
CAN.G631.25 Capsicum annuum HOM05D004188 ORTHO05D004445 4.5e-10 68.9 68 54.4
Rhsim01G0217100 Rhododendron simsii HOM05D004188 ORTHO05D004445 4.5e-10 68.9 55 63.6
Potri.004G210300 Populus trichocarpa HOM05D004188 ORTHO05D004445 5.8e-10 68.6 71 54.9
DCAR_006061 Daucus carota HOM05D004188 ORTHO05D004445 7.6e-10 68.2 65 56.9
PGR102G1665 Punica granatum HOM05D004188 ORTHO05D004445 7.6e-10 68.2 68 58.8
Sed0015663 Sechium edule HOM05D004188 ORTHO05D004445 7.6e-10 68.2 55 61.8
FAN11G3469 Fragaria x ananassa HOM05D004188 ORTHO05D004445 9.9e-10 67.8 64 56.2
Potri.009G013500 Populus trichocarpa HOM05D004188 ORTHO05D004445 9.9e-10 67.8 89 49.4
ECA248G2476 Erigeron canadensis HOM05D004188 ORTHO05D004445 1.3e-09 67.4 69 58.0
FAN25G0660 Fragaria x ananassa HOM05D004188 ORTHO05D004445 1.3e-09 67.4 144 38.9
Oeu030181.1 Olea europaea HOM05D004188 ORTHO05D004445 1.7e-09 67.0 71 54.9
arahy.Tifrunner.gnm1.ann1.70MDEI Arachis hypogaea HOM05D004188 ORTHO05D004445 2.2e-09 66.6 56 62.5
arahy.Tifrunner.gnm1.ann1.P4NYDW Arachis hypogaea HOM05D004188 ORTHO05D004445 2.2e-09 66.6 56 62.5
MELO3C026856.2 Cucumis melo HOM05D004188 ORTHO05D004445 2.2e-09 66.6 74 54.1
Nitab4.5_0000650g0240 Nicotiana tabacum HOM05D004188 ORTHO05D004445 2.2e-09 66.6 161 46.6
Lsat_1_v5_gn_2_98481 Lactuca sativa HOM05D004188 ORTHO05D004445 3.8e-09 65.9 71 43.7
Manes.11G144800 Manihot esculenta HOM05D004188 ORTHO05D004445 3.8e-09 65.9 69 56.5
Sabra04G0141900 Salix brachista HOM05D004188 ORTHO05D004445 4.9e-09 65.5 47 66.0
Ca_05256_v3 Cicer arietinum L. HOM05D004188 ORTHO05D004445 6.4e-09 65.1 71 56.3
Duzib170G0015 Durio zibethinus HOM05D004188 ORTHO05D004445 6.4e-09 65.1 181 34.3
Hma1.2p1_1031F.1_g250070 Hydrangea macrophylla HOM05D004188 ORTHO05D004445 6.4e-09 65.1 69 52.2
ECA233G4889 Erigeron canadensis HOM05D004188 ORTHO05D004445 8.4e-09 64.7 69 52.2
CsaV3_1G012810 Cucumis sativus L. HOM05D004188 ORTHO05D004445 1.1e-08 64.3 74 52.7
Psat7g224760 Pisum sativum HOM05D004188 ORTHO05D004445 1.1e-08 64.3 70 48.6
BcaC05g28877 Brassica carinata HOM05D026499 ORTHO05D027731 1.4e-08 63.9 122 51.6
C05p50000 Brassica napus HOM05D026499 ORTHO05D027731 1.4e-08 63.9 122 51.6
Glyma.11G146900 Glycine max HOM05D004188 ORTHO05D004445 1.4e-08 63.9 68 50.0
Peaxi162Scf00270g00089 Petunia axillaris HOM05D004188 ORTHO05D004445 1.4e-08 63.9 64 54.7
ClCG03G002160 Citrullus lanatus HOM05D004188 ORTHO05D004445 1.9e-08 63.5 74 54.1
Glyma.12G067800 Glycine max HOM05D004188 ORTHO05D004445 1.9e-08 63.5 68 52.9
Oeu001268.1 Olea europaea HOM05D004188 ORTHO05D004445 1.9e-08 63.5 68 48.5
arahy.Tifrunner.gnm1.ann1.D47N05 Arachis hypogaea HOM05D004188 ORTHO05D004445 2.4e-08 63.2 69 53.6
FAN21G0748 Fragaria x ananassa HOM05D004188 ORTHO05D004445 2.4e-08 63.2 46 65.2
Medtr4g059520 Medicago truncatula HOM05D004188 ORTHO05D004445 2.4e-08 63.2 72 54.2
Medtr4g459420 Medicago truncatula HOM05D004188 ORTHO05D004445 2.4e-08 63.2 72 54.2
Peaxi162Scf00092g00152 Petunia axillaris HOM05D004188 ORTHO05D004445 2.4e-08 63.2 73 53.4
Sp6g22190 Schrenkiella parvula HOM05D004188 ORTHO05D004445 2.4e-08 63.2 182 39.6
Sed0026517 Sechium edule HOM05D004188 ORTHO05D004445 2.4e-08 63.2 71 53.5
TPR.G15542 Trifolium pratense HOM05D004188 ORTHO05D004445 2.4e-08 63.2 74 54.1
AT5G60630 Arabidopsis thaliana HOM05D004188 ORTHO05D004445 3.2e-08 62.8 74 50.0
Carub.0008s2131 Capsella rubella HOM05D004188 ORTHO05D004445 3.2e-08 62.8 129 41.1
Cfa011320 Carpinus fangiana HOM05D004188 ORTHO05D004445 3.2e-08 62.8 67 61.2
Solyc11g069390.1 Solanum lycopersicum HOM05D004188 ORTHO05D004445 3.2e-08 62.8 64 54.7
FvH4_3g32420 Fragaria vesca HOM05D004188 ORTHO05D004445 4.2e-08 62.4 46 65.2
Gorai.009G106500 Gossypium raimondii HOM05D004188 ORTHO05D004445 4.2e-08 62.4 181 39.8
Migut.D02222 Erythranthe guttata HOM05D004188 ORTHO05D004445 5.5e-08 62.0 70 54.3
Migut.D02278 Erythranthe guttata HOM05D004188 ORTHO05D004445 5.5e-08 62.0 70 54.3
Manes.04G021600 Manihot esculenta HOM05D004188 ORTHO05D004445 7.1e-08 61.6 158 34.8
C09p53350 Brassica napus HOM05D004188 ORTHO05D004445 9.3e-08 61.2 61 55.7
Duzib150G1311 Durio zibethinus HOM05D004188 ORTHO05D004445 9.3e-08 61.2 174 35.6
Lsat_1_v5_gn_1_65340 Lactuca sativa HOM05D004188 ORTHO05D004445 9.3e-08 61.2 174 39.1
Sabra09G0008000 Salix brachista HOM05D004188 ORTHO05D004445 9.3e-08 61.2 160 40.0
unitig_699.g19195 Utricularia gibba HOM05D004188 ORTHO05D004445 9.3e-08 61.2 40 70.0
CiPaw.14G080400 Carya illinoinensis HOM05D004188 ORTHO05D004445 1.6e-07 60.5 73 49.3
Sopen11g028110 Solanum pennellii HOM05D004188 ORTHO05D004445 1.6e-07 60.5 156 38.5
TWI31G0432 Tripterygium wilfordii HOM05D004188 ORTHO05D004445 1.6e-07 60.5 69 49.3
arahy.Tifrunner.gnm1.ann1.86U5T6 Arachis hypogaea HOM05D004188 ORTHO05D004445 2.1e-07 60.1 58 58.6
Glyma.12G172900 Glycine max HOM05D004188 ORTHO05D004445 2.1e-07 60.1 66 51.5
VMungo1127G1131 Vigna mungo HOM05D000847 ORTHO05D003278 2.1e-07 60.1 173 43.4
Dinv32748 Davidia involucrata HOM05D004188 ORTHO05D004445 2.7e-07 59.7 173 42.8
Rhsim13G0094200 Rhododendron simsii HOM05D004188 ORTHO05D004445 2.7e-07 59.7 53 56.6
FAN16G2082 Fragaria x ananassa HOM05D004188 ORTHO05D004445 3.5e-07 59.3 179 40.2
MBI07_g19312_MAGBIO Magnolia biondii HOM05D004188 ORTHO05D004445 3.5e-07 59.3 175 41.7
Medtr2g094170 Medicago truncatula HOM05D004188 ORTHO05D004445 3.5e-07 59.3 69 44.9
Gohir.A05G102500 Gossypium hirsutum HOM05D004188 ORTHO05D004445 4.6e-07 58.9 158 36.7
Lalb_Chr14g0374691 Lupinus albus HOM05D004188 ORTHO05D004445 4.6e-07 58.9 70 52.9
Lalb_Chr22g0350231 Lupinus albus HOM05D004188 ORTHO05D004445 4.6e-07 58.9 67 50.7
TWI75G1406 Tripterygium wilfordii HOM05D004188 ORTHO05D004445 4.6e-07 58.9 153 40.5
BolC3t13742H Brassica oleracea HOM05D004188 ORTHO05D004445 7.9e-07 58.2 183 36.1
Actinidia03061 Actinidia chinensis HOM05D004188 ORTHO05D004445 1.3e-06 57.4 55 56.4
Ca_01416_v3 Cicer arietinum L. HOM05D004188 ORTHO05D004445 1.3e-06 57.4 69 47.8
MELO3C012432.2 Cucumis melo HOM05D004188 ORTHO05D004445 2.3e-06 56.6 50 56.0
Dinv31327 Davidia involucrata HOM05D001979 ORTHO05D001961 2.3e-06 56.6 44 59.1
BcaC04g19723 Brassica carinata HOM05D004188 ORTHO05D004445 3.0e-06 56.2 66 53.0
Lj3g0014225 Lotus japonicus HOM05D004188 ORTHO05D004445 3.0e-06 56.2 69 44.9
PSO063G5002 Papaver somniferum HOM05D011190 ORTHO05D004445 3.9e-06 55.8 68 47.1
PSO339G4510 Papaver somniferum HOM05D011190 ORTHO05D004445 3.9e-06 55.8 68 47.1
Actinidia24099 Actinidia chinensis HOM05D004188 ORTHO05D004445 5.1e-06 55.5 51 51.0
Prupe.2G214100 Prunus persica HOM05D004188 ORTHO05D004445 5.1e-06 55.5 49 51.0
TPR.G11601 Trifolium pratense HOM05D004188 ORTHO05D004445 5.1e-06 55.5 68 47.1
AL8G37220 Arabidopsis lyrata HOM05D004188 ORTHO05D004445 6.7e-06 55.1 183 41.5
arahy.Tifrunner.gnm1.ann1.H0Z3H2 Arachis hypogaea HOM05D004188 ORTHO05D004445 6.7e-06 55.1 55 50.9
CiPaw.13G112700 Carya illinoinensis HOM05D004188 ORTHO05D004445 6.7e-06 55.1 162 37.0
HPP92_005145 Vanilla planifolia HOM05D053319 ORTHO05D004445 6.7e-06 55.1 76 40.8
VMungo1080G0149 Vigna mungo HOM05D004188 ORTHO05D004445 8.7e-06 54.7 61 47.5
Zm00001eb064740 Zea mays HOM05D004188 ORTHO05D004445 8.7e-06 54.7 58 50.0


User provided reference genes

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