Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G20530 Arabidopsis lyrata HOM05D006328 ORTHO05D007721 1.3e-140 503.1 249 100.0
AT3G32930 Arabidopsis thaliana HOM05D006328 ORTHO05D007721 6.3e-132 474.2 250 94.8
Sp2g18300 Schrenkiella parvula HOM05D006328 ORTHO05D007721 1.0e-121 440.3 249 89.2
Carub.0003s3500 Capsella rubella HOM05D006328 ORTHO05D007721 5.5e-120 434.5 260 87.3
Thhalv10004835m.g Eutrema salsugineum HOM05D006328 ORTHO05D007721 5.7e-117 424.5 249 86.7
A06p39560 Brassica napus HOM05D006328 ORTHO05D007721 3.7e-116 421.8 250 86.0
BraA06t26871Z Brassica rapa HOM05D006328 ORTHO05D007721 3.7e-116 421.8 250 86.0
C07p38710 Brassica napus HOM05D006328 ORTHO05D007721 1.1e-115 420.2 250 85.6
BcaB04g19533 Brassica carinata HOM05D006328 ORTHO05D007721 1.6e-114 416.4 251 86.5
CARHR153570 Cardamine hirsuta HOM05D006328 ORTHO05D007721 3.2e-112 408.7 257 81.7
A09p04230 Brassica napus HOM05D006328 ORTHO05D007721 5.7e-109 397.9 251 82.9
BraA09t36060Z Brassica rapa HOM05D006328 ORTHO05D007721 1.7e-108 396.4 252 82.5
BcaC04g23807 Brassica carinata HOM05D006328 ORTHO05D007721 4.9e-108 394.8 249 81.9
C09p04470 Brassica napus HOM05D006328 ORTHO05D007721 4.9e-108 394.8 249 81.9
BolC9t53377H Brassica oleracea HOM05D006328 ORTHO05D007721 4.9e-108 394.8 249 81.9
THA.LOC104811061 Tarenaya hassleriana HOM05D006328 ORTHO05D007721 8.3e-108 394.0 259 79.9
Aa31LG4G12590 Aethionema arabicum HOM05D006328 ORTHO05D007721 1.2e-101 373.6 257 77.0
Ciclev10016391m.g Citrus clementina HOM05D006328 ORTHO05D007721 1.9e-91 339.7 243 72.4
Cpa.g.sc119.81 Carica papaya HOM05D006328 ORTHO05D007721 4.6e-90 335.1 248 68.1
Thecc.09G213100 Theobroma cacao HOM05D006328 ORTHO05D007721 4.6e-90 335.1 251 68.9
Gohir.D13G217500 Gossypium hirsutum HOM05D006328 ORTHO05D007721 8.6e-89 330.9 253 70.0
Gorai.013G248000 Gossypium raimondii HOM05D006328 ORTHO05D007721 1.1e-88 330.5 253 70.0
COL.COLO4_34990 Corchorus olitorius HOM05D001240 ORTHO05D002450 3.3e-88 328.9 198 80.3
Gohir.A13G213700 Gossypium hirsutum HOM05D006328 ORTHO05D007721 3.3e-88 328.9 253 69.6
Dinv13426 Davidia involucrata HOM05D006328 ORTHO05D007721 1.6e-87 326.6 232 71.1
Manes.03G088400 Manihot esculenta HOM05D006328 ORTHO05D007721 1.6e-87 326.6 261 67.8
Potri.003G216700 Populus trichocarpa HOM05D006328 ORTHO05D007721 2.8e-87 325.9 259 66.0
Atru.chr3.2259 Acer truncatum HOM05D006328 ORTHO05D007721 4.7e-87 325.1 238 70.6
Atru.chr3.2265 Acer truncatum HOM05D006328 ORTHO05D007721 4.7e-87 325.1 238 70.6
MELO3C015648.2 Cucumis melo HOM05D006328 ORTHO05D007721 4.7e-87 325.1 249 67.1
CsaV3_1G042230 Cucumis sativus L. HOM05D006328 ORTHO05D007721 1.4e-86 323.6 249 67.1
AUR62019196 Chenopodium quinoa HOM05D006328 ORTHO05D007721 1.8e-86 323.2 264 66.7
CANSAT11G2432 Cannabis sativa HOM05D006328 ORTHO05D007721 2.3e-86 322.8 264 65.5
ClCG08G005770 Citrullus lanatus HOM05D006328 ORTHO05D007721 2.3e-86 322.8 234 69.2
ClCG03G013990 Citrullus lanatus HOM05D006328 ORTHO05D007721 4.0e-86 322.0 234 69.2
FAN16G1952 Fragaria x ananassa HOM05D006328 ORTHO05D007721 4.0e-86 322.0 265 66.4
CiPaw.13G173100 Carya illinoinensis HOM05D006328 ORTHO05D007721 5.2e-86 321.6 233 71.7
FvH4_3g44830 Fragaria vesca HOM05D006328 ORTHO05D007721 6.8e-86 321.2 265 66.8
EL10Ac4g10350 Beta vulgaris HOM05D006328 ORTHO05D007721 8.9e-86 320.9 270 64.8
QL01p007982 Quercus lobata HOM05D006328 ORTHO05D007721 1.2e-85 320.5 263 65.8
RcHm_v2.0_Chr5g0081531 Rosa chinensis HOM05D006328 ORTHO05D007721 1.2e-85 320.5 252 67.1
GSVIVG01025405001 Vitis vinifera HOM05D006328 ORTHO05D007721 1.5e-85 320.1 226 71.2
FAN11G1794 Fragaria x ananassa HOM05D006328 ORTHO05D007721 2.0e-85 319.7 265 66.4
Eucgr.B03625 Eucalyptus grandis HOM05D006328 ORTHO05D007721 3.4e-85 318.9 227 69.2
PGR102G1639 Punica granatum HOM05D006328 ORTHO05D007721 3.4e-85 318.9 247 67.6
TWI60G0846 Tripterygium wilfordii HOM05D006328 ORTHO05D007721 4.4e-85 318.5 252 67.1
Actinidia16265 Actinidia chinensis HOM05D006328 ORTHO05D007721 7.5e-85 317.8 250 66.0
Medtr3g083310 Medicago truncatula HOM05D006328 ORTHO05D007721 9.9e-85 317.4 250 65.2
FAN25G2838 Fragaria x ananassa HOM05D006328 ORTHO05D007721 1.3e-84 317.0 265 66.0
Nitab4.5_0011368g0030 Nicotiana tabacum HOM05D006328 ORTHO05D007721 1.3e-84 317.0 224 71.4
Nn7g35935 Nelumbo nucifera HOM05D006328 ORTHO05D007721 2.9e-84 315.8 256 63.7
Sed0015335 Sechium edule HOM05D006328 ORTHO05D007721 2.9e-84 315.8 238 68.5
TAR633G0950 Trochodendron aralioides HOM05D006328 ORTHO05D007721 2.9e-84 315.8 260 63.1
TAR633G1956 Trochodendron aralioides HOM05D006328 ORTHO05D007721 2.9e-84 315.8 260 63.1
Glyma.08G315600 Glycine max HOM05D006328 ORTHO05D007721 6.4e-84 314.7 265 63.4
Lj1A460T3 Lonicera japonica HOM05D006328 ORTHO05D007721 6.4e-84 314.7 248 66.1
CSS0031266 Camellia sinensis var. sinensis HOM05D006328 ORTHO05D007721 8.3e-84 314.3 250 65.6
ECA238G4721 Erigeron canadensis HOM05D006328 ORTHO05D007721 1.1e-83 313.9 228 69.3
Nitab4.5_0000775g0140 Nicotiana tabacum HOM05D006328 ORTHO05D007721 1.1e-83 313.9 226 69.0
HanXRQChr07g0196761 Helianthus annuus HOM05D006328 ORTHO05D007721 1.9e-83 313.2 226 68.1
Hund07572 Selenicereus undatus HOM05D006328 ORTHO05D007721 2.4e-83 312.8 232 71.1
Sopen01g002030 Solanum pennellii HOM05D006328 ORTHO05D007721 3.2e-83 312.4 227 68.7
Peaxi162Scf00100g00716 Petunia axillaris HOM05D006328 ORTHO05D007721 4.1e-83 312.0 221 71.5
Lsat_1_v5_gn_2_101560 Lactuca sativa HOM05D006328 ORTHO05D007721 5.4e-83 311.6 226 67.3
Oeu029372.1 Olea europaea HOM05D006328 ORTHO05D007721 5.4e-83 311.6 224 69.6
CAN.G158.4 Capsicum annuum HOM05D006328 ORTHO05D007721 7.1e-83 311.2 226 69.0
PGSC0003DMG400032183 Solanum tuberosum HOM05D006328 ORTHO05D007721 7.1e-83 311.2 227 69.2
Solyc01g006020.4 Solanum lycopersicum HOM05D006328 ORTHO05D007721 9.2e-83 310.8 227 69.2
Phvul.006G042800 Phaseolus vulgaris HOM05D006328 ORTHO05D007721 1.2e-82 310.5 254 65.4
FAN21G0799 Fragaria x ananassa HOM05D006328 ORTHO05D007721 2.1e-82 309.7 275 63.6
Hma1.2p1_0062F.1_g034170 Hydrangea macrophylla HOM05D006328 ORTHO05D007721 2.1e-82 309.7 190 76.3
MSTRG.18860 Avicennia marina HOM05D006328 ORTHO05D007721 4.6e-82 308.5 205 71.7
Lalb_Chr10g0091951 Lupinus albus HOM05D006328 ORTHO05D007721 1.0e-81 307.4 256 63.7
MD08G1205200 Malus domestica HOM05D006328 ORTHO05D007721 1.7e-81 306.6 235 68.1
arahy.Tifrunner.gnm1.ann1.6HD85A Arachis hypogaea HOM05D006328 ORTHO05D007721 2.3e-81 306.2 255 63.1
Cc01_g01550 Coffea canephora HOM05D006328 ORTHO05D007721 3.0e-81 305.8 241 65.1
TPR.G19330 Trifolium pratense HOM05D006328 ORTHO05D007721 3.0e-81 305.8 238 65.5
Glyma.18G097300 Glycine max HOM05D006328 ORTHO05D007721 3.9e-81 305.4 268 62.3
Prupe.1G537200 Prunus persica HOM05D006328 ORTHO05D007721 3.9e-81 305.4 264 62.9
SalBow6G6014 Salvia bowleyana HOM05D006328 ORTHO05D007721 6.6e-81 304.7 235 66.8
Sabra03G0161800 Salix brachista HOM05D006328 ORTHO05D007721 8.6e-81 304.3 283 59.4
Migut.D02532 Erythranthe guttata HOM05D006328 ORTHO05D007721 1.1e-80 303.9 238 65.1
Lj6g0000665 Lotus japonicus HOM05D006328 ORTHO05D007721 1.5e-80 303.5 247 64.0
Manes.15G105600 Manihot esculenta HOM05D006328 ORTHO05D007721 1.9e-80 303.1 249 66.3
SGA_v2.0_scaffold6G03437 Striga asiatica HOM05D006328 ORTHO05D007721 3.3e-80 302.4 194 75.8
MBI13_g29633_MAGBIO Magnolia biondii HOM05D006328 ORTHO05D007721 4.3e-80 302.0 223 67.7
PSO339G5084 Papaver somniferum HOM05D006328 ORTHO05D007721 6.2e-79 298.1 251 61.4
ATR0598G038 Amborella trichopoda HOM05D006328 ORTHO05D007721 2.6e-77 292.7 223 66.8
Haze_22985 Corylus avellana HOM05D006328 ORTHO05D007721 2.6e-77 292.7 309 55.3
unitig_746.g26630 Utricularia gibba HOM05D006328 ORTHO05D007721 2.6e-77 292.7 187 74.9
PSO384G1580 Papaver somniferum HOM05D006328 ORTHO05D007721 3.4e-77 292.4 251 60.6
AUR62000025 Chenopodium quinoa HOM05D006328 ORTHO05D007721 7.6e-77 291.2 175 79.4
DCAR_001992 Daucus carota HOM05D006328 ORTHO05D007721 1.1e-75 287.3 225 64.9
Actinidia06854 Actinidia chinensis HOM05D001240 ORTHO05D002450 1.9e-75 286.6 201 70.1
CDE06G2606 Ceratophyllum demersum HOM05D006328 ORTHO05D007721 2.4e-75 286.2 243 60.5
Duzib150G1371 Durio zibethinus HOM05D006328 ORTHO05D007721 3.2e-75 285.8 256 61.3
HPP92_009650 Vanilla planifolia HOM05D006328 ORTHO05D007721 1.2e-74 283.9 189 72.5
Ah.06g193050 Amaranthus hybridus HOM05D001193 ORTHO05D007721 1.9e-72 276.6 252 56.3
Aqoxy1G00065 Aquilegia oxysepala HOM05D006328 ORTHO05D007721 2.5e-72 276.2 252 56.7
Rhsim13G0229700 Rhododendron simsii HOM05D006328 ORTHO05D007721 1.8e-70 270.0 262 56.9
Hma1.2p1_0062F.1_g034180 Hydrangea macrophylla HOM05D006328 ORTHO05D007721 1.7e-65 253.4 138 84.1
vmacro04215 Vaccinium macrocarpon HOM05D006328 ORTHO05D007721 1.7e-65 253.4 187 70.6
Os07g0608100 Oryza sativa ssp. japonica HOM05D006328 ORTHO05D007721 6.6e-65 251.5 227 59.5
Zm00001eb108920 Zea mays HOM05D006328 ORTHO05D007721 2.8e-63 246.1 219 58.9
VMungo0540G0449 Vigna mungo HOM05D006328 ORTHO05D007721 1.0e-57 227.6 122 86.1
Psat5g101200 Pisum sativum HOM05D006328 ORTHO05D007721 5.1e-57 225.3 196 61.7
AagrBONN_evm.TU.Sc2ySwM_344.1649 Anthoceros agrestis HOM05D006328 ORTHO05D007721 1.8e-49 200.3 230 50.4
Mapoly0048s0070 Marchantia polymorpha HOM05D006328 ORTHO05D007721 4.8e-47 192.2 192 51.6
Sc06g0004300 Simmondsia chinensis HOM05D006328 ORTHO05D007721 1.4e-46 190.7 191 56.5
vmacro22566 Vaccinium macrocarpon HOM05D006328 ORTHO05D007721 1.5e-45 187.2 105 84.8
Pp3c11_23310 Physcomitrium patens HOM05D006328 ORTHO05D007721 1.9e-43 180.3 191 52.9
CDE07G1106 Ceratophyllum demersum HOM05D006328 ORTHO05D007721 6.9e-38 161.8 235 42.1
CBR_g50072 Chara braunii HOM05D006328 ORTHO05D007721 1.0e-36 157.9 146 52.1
CSS0049555 Camellia sinensis var. sinensis HOM05D006328 ORTHO05D007721 3.0e-33 146.4 105 71.4
CSS0028438 Camellia sinensis var. sinensis HOM05D006328 ORTHO05D007721 9.7e-32 141.4 103 70.9
Nn2g15765 Nelumbo nucifera HOM05D006328 ORTHO05D007721 4.1e-30 136.0 71 87.3
Duzib168G1709 Durio zibethinus HOM05D006328 ORTHO05D007721 1.5e-29 134.0 183 43.2
HanXRQChr04g0113321 Helianthus annuus HOM05D006328 ORTHO05D007721 3.9e-25 119.4 61 85.2
Nn2g15764 Nelumbo nucifera HOM05D006328 ORTHO05D007721 2.9e-20 103.2 87 56.3
HanXRQChr17g0560491 Helianthus annuus HOM05D006328 ORTHO05D007721 1.6e-18 97.4 57 78.9
Dinv15017 Davidia involucrata HOM05D006328 ORTHO05D007721 3.0e-17 93.2 123 48.0
arahy.Tifrunner.gnm1.ann1.VB18ZC Arachis hypogaea HOM05D006328 ORTHO05D007721 8.8e-17 91.7 129 44.2
unitig_899.g15354 Utricularia gibba HOM05D006328 ORTHO05D007721 7.4e-16 88.6 50 74.0
VMungo0540G1370 Vigna mungo HOM05D006328 ORTHO05D007721 5.3e-14 82.4 66 62.1
arahy.Tifrunner.gnm1.ann1.C5G03I Arachis hypogaea HOM05D006328 ORTHO05D007721 2.6e-13 80.1 62 61.3
Hma1.2p1_0062F.1_g034160 Hydrangea macrophylla HOM05D006328 ORTHO05D007721 6.5e-12 75.5 98 43.9
Sabra06G0010000 Salix brachista HOM05D006328 ORTHO05D007721 5.5e-11 72.4 107 43.0
Zm00001eb327220 Zea mays HOM05D006328 ORTHO05D007721 4.7e-10 69.3 70 52.9
BcaC02g11492 Brassica carinata HOM05D001205 ORTHO05D001087 4.4e-08 62.8 48 66.7


User provided reference genes

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