Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G17830 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 1.9e-203 712.2 343 100.0
AL5G17810 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 4.0e-129 465.3 346 70.2
Carub.0005s0676 Capsella rubella HOM05D002743 ORTHO05D002895 2.5e-110 402.9 349 60.7
Carub.0008s0568 Capsella rubella HOM05D002743 ORTHO05D002895 4.6e-101 372.1 351 58.4
AT3G28280 Arabidopsis thaliana HOM05D002743 ORTHO05D002895 2.3e-100 369.8 241 76.3
AT3G28330 Arabidopsis thaliana HOM05D002743 ORTHO05D002895 7.2e-86 321.6 366 51.1
AL8G22320 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 2.1e-85 320.1 360 50.3
AL34U10080 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 1.4e-84 317.4 360 50.3
A02p35850 Brassica napus HOM05D002743 ORTHO05D002895 3.9e-84 315.8 358 50.6
BraA02t08589Z Brassica rapa HOM05D002743 ORTHO05D002895 3.9e-84 315.8 358 50.6
A09p04310 Brassica napus HOM05D002743 ORTHO05D002895 2.0e-83 313.5 381 48.6
BraA02t08585Z Brassica rapa HOM05D002743 ORTHO05D002895 5.7e-83 312.0 358 50.3
C02p54750 Brassica napus HOM05D002743 ORTHO05D002895 7.4e-83 311.6 358 49.7
BraA09t36068Z Brassica rapa HOM05D002743 ORTHO05D002895 7.4e-83 311.6 376 48.7
Carub.0005s0683 Capsella rubella HOM05D002743 ORTHO05D002895 1.3e-82 310.8 365 49.3
BcaC03g17512 Brassica carinata HOM05D002743 ORTHO05D002895 2.2e-82 310.1 358 49.7
BolC2t11536H Brassica oleracea HOM05D002743 ORTHO05D002895 2.2e-82 310.1 358 49.7
AL8G22310 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 6.3e-82 308.5 357 49.9
BcaC04g23794 Brassica carinata HOM05D002743 ORTHO05D002895 7.0e-81 305.1 372 46.2
C09p04610 Brassica napus HOM05D002743 ORTHO05D002895 2.0e-80 303.5 372 46.0
BolC9t53389H Brassica oleracea HOM05D002743 ORTHO05D002895 2.0e-80 303.5 372 46.0
C09p04580 Brassica napus HOM05D002743 ORTHO05D002895 4.2e-78 295.8 369 46.3
A04p11100 Brassica napus HOM05D002743 ORTHO05D002895 1.2e-77 294.3 369 46.9
A07p07740 Brassica napus HOM05D002743 ORTHO05D002895 1.8e-76 290.4 362 46.4
BraA04t16772Z Brassica rapa HOM05D002743 ORTHO05D002895 1.8e-76 290.4 370 46.2
C04p44830 Brassica napus HOM05D002743 ORTHO05D002895 2.3e-76 290.0 363 47.4
BraA07t28566Z Brassica rapa HOM05D002743 ORTHO05D002895 3.0e-76 289.7 362 46.4
Carub.0005s0675 Capsella rubella HOM05D002743 ORTHO05D002895 4.4e-75 285.8 355 47.9
BolC9t53387H Brassica oleracea HOM05D002743 ORTHO05D002895 2.8e-74 283.1 368 45.4
AT3G28223 Arabidopsis thaliana HOM05D002743 ORTHO05D002895 4.5e-72 275.8 362 43.9
BcaC06g36618 Brassica carinata HOM05D002743 ORTHO05D002895 1.8e-68 263.8 359 47.1
BcaC06g36619 Brassica carinata HOM05D002743 ORTHO05D002895 1.8e-68 263.8 359 47.1
BcaC06g35723 Brassica carinata HOM05D002743 ORTHO05D002895 8.8e-68 261.5 364 43.4
BcaC04g23796 Brassica carinata HOM05D002743 ORTHO05D002895 1.2e-67 261.2 365 43.0
C07p11650 Brassica napus HOM05D002743 ORTHO05D002895 2.6e-67 260.0 335 45.4
CARHR149600 Cardamine hirsuta HOM05D002743 ORTHO05D002895 4.1e-65 252.7 236 58.5
Thhalv10000704m.g Eutrema salsugineum HOM05D002743 ORTHO05D002895 4.1e-65 252.7 372 44.6
Carub.0005s0673 Capsella rubella HOM05D002743 ORTHO05D002895 6.6e-63 245.4 363 41.9
Thhalv10009727m.g Eutrema salsugineum HOM05D002743 ORTHO05D002895 3.3e-62 243.0 375 44.0
Carub.0004s2674 Capsella rubella HOM05D002743 ORTHO05D002895 1.4e-60 237.7 362 43.1
BcaC02g09624 Brassica carinata HOM05D002743 ORTHO05D002895 1.8e-57 227.3 281 48.4
BolC4t26061H Brassica oleracea HOM05D002743 ORTHO05D002895 1.8e-57 227.3 281 48.4
C07p02110 Brassica napus HOM05D002743 ORTHO05D002895 2.4e-57 226.9 349 44.1
CARHR286050 Cardamine hirsuta HOM05D002743 ORTHO05D002895 1.7e-55 220.7 241 49.8
AL3G39670 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 3.6e-53 213.0 327 41.3
A03p54310 Brassica napus HOM05D002743 ORTHO05D002895 1.8e-52 210.7 265 48.7
BcaB03g16763 Brassica carinata HOM05D002743 ORTHO05D002895 6.0e-48 195.7 322 43.2
BolC7t41637H Brassica oleracea HOM05D002743 ORTHO05D002895 3.0e-47 193.4 268 44.0
AL34U10060 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 6.6e-47 192.2 347 37.5
BcaB04g19549 Brassica carinata HOM05D002743 ORTHO05D002895 1.1e-46 191.4 367 36.5
Thhalv10028185m.g Eutrema salsugineum HOM05D002743 ORTHO05D002895 2.5e-46 190.3 284 44.4
BcaNung01438 Brassica carinata HOM05D002743 ORTHO05D002895 1.1e-44 184.9 230 47.8
Thhalv10009395m.g Eutrema salsugineum HOM05D002743 ORTHO05D002895 1.5e-43 181.0 364 37.4
BolC4t26059H Brassica oleracea HOM05D002743 ORTHO05D002895 1.9e-41 174.1 213 46.5
SpUn0003_0080 Schrenkiella parvula HOM05D002743 ORTHO05D002895 3.9e-39 166.4 262 41.2
AL3G39690 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 6.6e-39 165.6 192 50.5
BolC7t45770H Brassica oleracea HOM05D002743 ORTHO05D002895 3.6e-37 159.8 209 45.9
Thhalv10001535m.g Eutrema salsugineum HOM05D002743 ORTHO05D002895 3.1e-36 156.8 312 35.9
AT3G48220 Arabidopsis thaliana HOM05D002743 ORTHO05D002895 4.0e-36 156.4 195 46.7
BcaC02g09623 Brassica carinata HOM05D002743 ORTHO05D002895 2.0e-35 154.1 169 49.7
CARHR292690 Cardamine hirsuta HOM05D002743 ORTHO05D002895 2.6e-35 153.7 156 55.1
C07p52690 Brassica napus HOM05D002743 ORTHO05D002895 3.4e-35 153.3 174 48.3
AL5G17850 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 1.7e-34 151.0 169 51.5
AL5G16370 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 8.3e-34 148.7 340 35.0
BcaC04g23797 Brassica carinata HOM05D002743 ORTHO05D002895 2.4e-33 147.1 176 50.6
Thhalv10029227m.g Eutrema salsugineum HOM05D002743 ORTHO05D002895 1.2e-32 144.8 333 30.3
AL1G27780 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 1.6e-32 144.4 380 32.1
Sp2g04630 Schrenkiella parvula HOM05D002743 ORTHO05D002895 2.7e-32 143.7 331 32.9
AL1G67480 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 4.6e-32 142.9 331 32.6
THA.LOC104824016 Tarenaya hassleriana HOM05D002743 ORTHO05D002895 6.0e-32 142.5 378 31.0
AL6G43490 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 1.0e-31 141.7 340 29.4
AL6G47130 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 1.3e-31 141.4 337 30.0
BcaB07g33451 Brassica carinata HOM05D002743 ORTHO05D002895 3.9e-31 139.8 329 34.7
CARHR100280 Cardamine hirsuta HOM05D002743 ORTHO05D002895 6.6e-31 139.0 332 29.8
THA.LOC104823978 Tarenaya hassleriana HOM05D002743 ORTHO05D002895 6.6e-31 139.0 383 31.3
AL3G39550 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 8.6e-31 138.7 387 28.4
BraA03t14493Z Brassica rapa HOM05D002743 ORTHO05D002895 1.9e-30 137.5 172 50.6
CARHR033610 Cardamine hirsuta HOM05D002743 ORTHO05D002895 3.3e-30 136.7 330 30.6
BraA10t43989Z Brassica rapa HOM05D002743 ORTHO05D002895 4.3e-30 136.3 313 32.6
AT1G15680 Arabidopsis thaliana HOM05D002743 ORTHO05D002895 5.6e-30 136.0 330 33.3
AL5G14680 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 7.3e-30 135.6 318 33.6
Carub.0006s2838 Capsella rubella HOM05D002743 ORTHO05D002895 7.3e-30 135.6 305 30.8
A01p25990 Brassica napus HOM05D002743 ORTHO05D002895 1.2e-29 134.8 315 32.7
AL3G39570 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 2.1e-29 134.0 386 30.3
A10p18240 Brassica napus HOM05D002743 ORTHO05D002895 2.8e-29 133.7 320 30.9
BraA01t02518Z Brassica rapa HOM05D002743 ORTHO05D002895 2.8e-29 133.7 315 32.1
CARHR229890 Cardamine hirsuta HOM05D002743 ORTHO05D002895 3.6e-29 133.3 377 29.7
BcaC08g43177 Brassica carinata HOM05D002743 ORTHO05D002895 6.2e-29 132.5 327 31.5
A06p03440 Brassica napus HOM05D002743 ORTHO05D002895 8.1e-29 132.1 329 32.2
BraA10t43899Z Brassica rapa HOM05D002743 ORTHO05D002895 8.1e-29 132.1 315 31.7
Sp3g21990 Schrenkiella parvula HOM05D002743 ORTHO05D002895 1.1e-28 131.7 408 26.5
Aa31sc58G40 Aethionema arabicum HOM05D002743 ORTHO05D002895 1.4e-28 131.3 342 29.8
A10p19100 Brassica napus HOM05D002743 ORTHO05D002895 1.8e-28 131.0 316 32.9
Carub.0007s1889 Capsella rubella HOM05D002743 ORTHO05D002895 1.8e-28 131.0 324 31.8
BcaB08g36410 Brassica carinata HOM05D002743 ORTHO05D002895 4.0e-28 129.8 355 29.3
BraA06t23552Z Brassica rapa HOM05D002743 ORTHO05D002895 4.0e-28 129.8 328 31.1
C06p04770 Brassica napus HOM05D002743 ORTHO05D002895 5.2e-28 129.4 327 31.2
BolC1t01435H Brassica oleracea HOM05D002743 ORTHO05D002895 5.2e-28 129.4 327 33.0
BolC7t41698H Brassica oleracea HOM05D002743 ORTHO05D002895 6.8e-28 129.0 407 27.3
AL133U10030 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 8.9e-28 128.6 155 48.4
CARHR025250 Cardamine hirsuta HOM05D002743 ORTHO05D002895 8.9e-28 128.6 319 32.6
Thhalv10027176m.g Eutrema salsugineum HOM05D002743 ORTHO05D002895 8.9e-28 128.6 327 32.1
A01p12360 Brassica napus HOM05D002743 ORTHO05D002895 1.5e-27 127.9 303 31.7
A10p19880 Brassica napus HOM05D002743 ORTHO05D002895 1.5e-27 127.9 317 32.2
AL5G18350 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 2.0e-27 127.5 372 29.3
BcaC06g35666 Brassica carinata HOM05D002743 ORTHO05D002895 2.6e-27 127.1 407 27.3
AT3G23950 Arabidopsis thaliana HOM05D002743 ORTHO05D002895 3.4e-27 126.7 331 30.2
Carub.0005s0386 Capsella rubella HOM05D002743 ORTHO05D002895 3.4e-27 126.7 310 30.6
AT4G22430 Arabidopsis thaliana HOM05D002743 ORTHO05D002895 4.4e-27 126.3 316 32.9
BraA01t01181Z Brassica rapa HOM05D002743 ORTHO05D002895 4.4e-27 126.3 306 31.0
BcaB07g33444 Brassica carinata HOM05D002743 ORTHO05D002895 9.9e-27 125.2 333 31.5
C07p12300 Brassica napus HOM05D002743 ORTHO05D002895 9.9e-27 125.2 402 27.1
Carub.0007s1819 Capsella rubella HOM05D002743 ORTHO05D002895 9.9e-27 125.2 360 29.4
C06p04690 Brassica napus HOM05D002743 ORTHO05D002895 1.3e-26 124.8 332 31.0
AL3G39540 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 1.7e-26 124.4 331 30.8
A05p20390 Brassica napus HOM05D002743 ORTHO05D002895 1.7e-26 124.4 394 28.7
A09p17800 Brassica napus HOM05D002743 ORTHO05D002895 2.2e-26 124.0 334 31.1
BolC6t35599H Brassica oleracea HOM05D002743 ORTHO05D002895 2.2e-26 124.0 344 30.8
BraA09t37413Z Brassica rapa HOM05D002743 ORTHO05D002895 2.2e-26 124.0 334 31.1
CARHR158010 Cardamine hirsuta HOM05D002743 ORTHO05D002895 2.2e-26 124.0 247 36.8
AL1G57560 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 2.9e-26 123.6 329 31.0
BcaB07g33448 Brassica carinata HOM05D002743 ORTHO05D002895 3.8e-26 123.2 344 29.9
A02p05860 Brassica napus HOM05D002743 ORTHO05D002895 3.8e-26 123.2 314 32.2
BraA02t05538Z Brassica rapa HOM05D002743 ORTHO05D002895 3.8e-26 123.2 314 32.2
BcaC04g22203 Brassica carinata HOM05D002743 ORTHO05D002895 4.9e-26 122.9 346 31.2
C09p22150 Brassica napus HOM05D002743 ORTHO05D002895 4.9e-26 122.9 348 31.0
BolC2t06988H Brassica oleracea HOM05D002743 ORTHO05D002895 4.9e-26 122.9 317 31.9
Carub.0151s0001 Capsella rubella HOM05D002743 ORTHO05D002895 4.9e-26 122.9 395 28.1
BcaB07g33449 Brassica carinata HOM05D002743 ORTHO05D002895 6.4e-26 122.5 331 31.7
BcaB08g37317 Brassica carinata HOM05D002743 ORTHO05D002895 8.4e-26 122.1 318 31.4
BolC9t55130H Brassica oleracea HOM05D002743 ORTHO05D002895 8.4e-26 122.1 348 31.0
A07p08150 Brassica napus HOM05D002743 ORTHO05D002895 1.4e-25 121.3 406 26.6
AT3G26010 Arabidopsis thaliana HOM05D002743 ORTHO05D002895 1.9e-25 120.9 317 31.2
BraA07t28599Z Brassica rapa HOM05D002743 ORTHO05D002895 1.9e-25 120.9 406 26.6
Thhalv10013759m.g Eutrema salsugineum HOM05D002743 ORTHO05D002895 1.9e-25 120.9 362 29.3
Sp1g36850 Schrenkiella parvula HOM05D002743 ORTHO05D002895 2.4e-25 120.6 336 29.8
SpUn0137_0030 Schrenkiella parvula HOM05D002743 ORTHO05D002895 2.4e-25 120.6 336 29.8
BcaB06g26601 Brassica carinata HOM05D002743 ORTHO05D002895 3.2e-25 120.2 351 27.6
AT1G49990 Arabidopsis thaliana HOM05D002743 ORTHO05D002895 5.4e-25 119.4 346 29.8
Carub.0006s3248 Capsella rubella HOM05D002743 ORTHO05D002895 5.4e-25 119.4 391 27.1
BcaB07g31193 Brassica carinata HOM05D002743 ORTHO05D002895 7.1e-25 119.0 340 29.4
BcaC08g43169 Brassica carinata HOM05D002743 ORTHO05D002895 7.1e-25 119.0 332 30.4
AL6G48160 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 1.2e-24 118.2 384 27.1
BcaNung04711 Brassica carinata HOM05D002743 ORTHO05D002895 1.2e-24 118.2 366 30.3
CARHR100270 Cardamine hirsuta HOM05D002743 ORTHO05D002895 1.2e-24 118.2 325 28.6
Aa31sc58G10 Aethionema arabicum HOM05D002743 ORTHO05D002895 1.6e-24 117.9 339 27.4
A02p35840 Brassica napus HOM05D002743 ORTHO05D002895 1.6e-24 117.9 282 32.3
A02p35880 Brassica napus HOM05D002743 ORTHO05D002895 1.6e-24 117.9 112 56.2
THA.LOC104805970 Tarenaya hassleriana HOM05D002743 ORTHO05D002895 1.6e-24 117.9 344 31.1
A02p35860 Brassica napus HOM05D002743 ORTHO05D002895 4.6e-24 116.3 195 42.1
BraA05t20946Z Brassica rapa HOM05D002743 ORTHO05D002895 4.6e-24 116.3 394 27.7
Thhalv10022100m.g Eutrema salsugineum HOM05D002743 ORTHO05D002895 3.9e-23 113.2 191 39.3
AL6G48200 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 2.5e-22 110.5 331 29.0
A02p35870 Brassica napus HOM05D002743 ORTHO05D002895 2.5e-22 110.5 122 50.0
BcaB08g36563 Brassica carinata HOM05D002743 ORTHO05D002895 3.3e-22 110.2 355 28.7
Thhalv10011517m.g Eutrema salsugineum HOM05D002743 ORTHO05D002895 4.3e-22 109.8 335 29.9
Aa31LG9G5850 Aethionema arabicum HOM05D002743 ORTHO05D002895 5.6e-22 109.4 318 28.0
AL4G45790 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 7.3e-22 109.0 237 33.8
CARHR040090 Cardamine hirsuta HOM05D002743 ORTHO05D002895 1.1e-20 105.1 339 31.3
BraA02t08588Z Brassica rapa HOM05D002743 ORTHO05D002895 6.9e-20 102.4 275 30.9
Carub.0005s1587 Capsella rubella HOM05D002743 ORTHO05D002895 9.0e-20 102.1 299 32.1
BcaC01g00721 Brassica carinata HOM05D002743 ORTHO05D002895 1.7e-18 97.8 243 33.3
C03p83580 Brassica napus HOM05D002743 ORTHO05D002895 1.7e-18 97.8 243 33.3
BolC3t20638H Brassica oleracea HOM05D002743 ORTHO05D002895 1.7e-18 97.8 243 33.3
C04p44820 Brassica napus HOM05D002743 ORTHO05D002895 3.8e-18 96.7 103 48.5
BolC7t40616H Brassica oleracea HOM05D002743 ORTHO05D002895 3.8e-18 96.7 124 46.8
BolC9t58491H Brassica oleracea HOM05D002743 ORTHO05D002895 8.4e-18 95.5 296 27.0
Thhalv10024137m.g Eutrema salsugineum HOM05D002743 ORTHO05D002895 8.4e-18 95.5 328 25.6
BcaB06g27161 Brassica carinata HOM05D002743 ORTHO05D002895 1.4e-17 94.7 107 48.6
AL7G33200 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 2.4e-17 94.0 280 30.4
C01p14880 Brassica napus HOM05D002743 ORTHO05D002895 2.4e-17 94.0 303 28.7
AL5G18360 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 1.2e-16 91.7 357 28.3
BNapus_Darmor_BZH_scaffold_38p02040 Brassica napus HOM05D002743 ORTHO05D002895 2.7e-16 90.5 236 32.2
Thhalv10023522m.g Eutrema salsugineum HOM05D002743 ORTHO05D002895 4.6e-16 89.7 305 27.5
C09p56250 Brassica napus HOM05D002743 ORTHO05D002895 4.3e-14 83.2 292 26.0
C03p83640 Brassica napus HOM05D002743 ORTHO05D002895 2.4e-12 77.4 135 40.0
BolC9t58494H Brassica oleracea HOM05D002743 ORTHO05D002895 6.9e-12 75.9 276 25.7
C09p56220 Brassica napus HOM05D002609 ORTHO05D002820 1.2e-11 75.1 277 25.3
BcaNung03477 Brassica carinata HOM05D002743 ORTHO05D002895 2.2e-10 70.9 136 35.3
BcaC09g51280 Brassica carinata HOM05D002743 ORTHO05D002895 3.8e-10 70.1 105 41.9
BcaNung04713 Brassica carinata HOM05D002743 ORTHO05D002895 4.2e-09 66.6 110 39.1
C03p83600 Brassica napus HOM05D002743 ORTHO05D002895 1.3e-07 61.6 106 40.6
C09p53870 Brassica napus HOM05D002743 ORTHO05D002895 1.3e-07 61.6 140 33.6
AL5G27910 Arabidopsis lyrata HOM05D002743 ORTHO05D021402 1.8e-07 61.2 36 69.4
SGA_v2.0_scaffold1G00575 Striga asiatica HOM05D001729 ORTHO05D001155 1.8e-07 61.2 164 27.4
BolC6t35602H Brassica oleracea HOM05D002743 ORTHO05D002895 2.3e-07 60.8 188 29.3
BcaB06g27159 Brassica carinata HOM05D002743 ORTHO05D002895 3.0e-07 60.5 79 45.6
SGA_v2.0_scaffold1G00346 Striga asiatica HOM05D001729 ORTHO05D001155 3.0e-07 60.5 250 26.0
BcaC08g43170 Brassica carinata HOM05D002743 ORTHO05D002895 5.1e-07 59.7 165 32.7
BcaC08g43174 Brassica carinata HOM05D002743 ORTHO05D002895 6.7e-07 59.3 150 31.3
C06p04730 Brassica napus HOM05D002743 ORTHO05D002895 1.1e-06 58.5 112 36.6
CARHR229330 Cardamine hirsuta HOM05D002743 ORTHO05D002895 4.3e-06 56.6 101 36.6


User provided reference genes

Program Settings