Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G14600 Arabidopsis lyrata HOM05D005168 ORTHO05D006358 3.2e-65 251.5 120 100.0
AT3G25940 Arabidopsis thaliana HOM05D005168 ORTHO05D006358 2.0e-59 232.3 120 93.3
BcaB03g14336 Brassica carinata HOM05D005168 ORTHO05D006358 2.6e-59 231.9 120 90.8
BcaB03g14344 Brassica carinata HOM05D005168 ORTHO05D006358 2.6e-59 231.9 120 90.8
C07p23400 Brassica napus HOM05D005168 ORTHO05D006358 2.6e-59 231.9 120 90.8
BolC7t42872H Brassica oleracea HOM05D005168 ORTHO05D006358 2.6e-59 231.9 120 90.8
Sp1g17830 Schrenkiella parvula HOM05D005168 ORTHO05D006358 3.4e-59 231.5 120 91.7
A07p16030 Brassica napus HOM05D005168 ORTHO05D006358 5.8e-59 230.7 120 90.8
BraA07t29331Z Brassica rapa HOM05D005168 ORTHO05D006358 5.8e-59 230.7 120 90.8
Thhalv10009132m.g Eutrema salsugineum HOM05D005168 ORTHO05D006358 7.6e-59 230.3 120 91.7
Thhalv10019327m.g Eutrema salsugineum HOM05D005168 ORTHO05D006358 1.7e-58 229.2 120 90.8
CARHR020540 Cardamine hirsuta HOM05D005168 ORTHO05D006358 2.9e-58 228.4 120 90.8
BraA06t24725Z Brassica rapa HOM05D005168 ORTHO05D006358 1.1e-57 226.5 120 88.3
CARHR146930 Cardamine hirsuta HOM05D005168 ORTHO05D006358 1.4e-57 226.1 120 90.0
BcaC05g25900 Brassica carinata HOM05D005168 ORTHO05D006358 3.2e-57 224.9 120 88.3
C05p18550 Brassica napus HOM05D005168 ORTHO05D006358 3.2e-57 224.9 120 88.3
BcaB07g32021 Brassica carinata HOM05D005168 ORTHO05D006358 7.1e-57 223.8 120 88.3
A06p16200 Brassica napus HOM05D005168 ORTHO05D006358 9.3e-57 223.4 120 88.3
BolC5t30566H Brassica oleracea HOM05D005168 ORTHO05D006358 9.3e-57 223.4 120 87.5
Carub.0005s0380 Capsella rubella HOM05D005168 ORTHO05D006358 1.3e-55 219.5 120 85.8
Aa31LG4G6030 Aethionema arabicum HOM05D005168 ORTHO05D006358 5.3e-52 207.6 121 82.6
THA.LOC104825468 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 3.8e-50 201.4 121 81.0
THA.LOC104811420 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 6.5e-50 200.7 121 81.0
THA.LOC104825467 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 1.4e-49 199.5 121 80.2
Cpa.g.sc58.102 Carica papaya HOM05D005168 ORTHO05D006358 1.3e-42 176.4 121 70.2
CiPaw.07G147200 Carya illinoinensis HOM05D005168 ORTHO05D006358 1.4e-36 156.4 120 63.3
Psat5g045240 Pisum sativum HOM05D005168 ORTHO05D006358 2.0e-35 152.5 120 60.8
Atru.chr1.3654 Acer truncatum HOM05D005168 ORTHO05D006358 4.5e-35 151.4 121 61.2
Ca_00384_v3 Cicer arietinum L. HOM05D005168 ORTHO05D006358 3.8e-34 148.3 120 59.2
CANSAT11G0916 Cannabis sativa HOM05D005168 ORTHO05D006358 8.5e-34 147.1 120 60.0
Lalb_Chr11g0067001 Lupinus albus HOM05D005168 ORTHO05D006358 2.5e-33 145.6 117 59.8
Manes.14G063600 Manihot esculenta HOM05D005168 ORTHO05D006358 7.2e-33 144.1 120 57.5
Medtr3g102420 Medicago truncatula HOM05D005168 ORTHO05D006358 3.6e-32 141.7 117 59.0
Thecc.08G047200 Theobroma cacao HOM05D005168 ORTHO05D006358 8.0e-32 140.6 122 59.0
MELO3C011355.2 Cucumis melo HOM05D005168 ORTHO05D006358 1.4e-31 139.8 120 58.3
Sed0007604 Sechium edule HOM05D005168 ORTHO05D006358 1.8e-31 139.4 120 56.7
Lj1g0018211 Lotus japonicus HOM05D005168 ORTHO05D006358 2.3e-31 139.0 120 55.0
Haze_22662 Corylus avellana HOM05D005168 ORTHO05D006358 3.0e-31 138.7 120 55.0
MD08G1010500 Malus domestica HOM05D005168 ORTHO05D006358 6.7e-31 137.5 121 57.9
CsaV3_2G024260 Cucumis sativus L. HOM05D005168 ORTHO05D006358 8.8e-31 137.1 120 56.7
TWI56G1449 Tripterygium wilfordii HOM05D005168 ORTHO05D006358 8.8e-31 137.1 120 57.5
Haze_17776 Corylus avellana HOM05D005168 ORTHO05D006358 1.1e-30 136.7 120 54.2
PGR031G0142 Punica granatum HOM05D005168 ORTHO05D006358 1.5e-30 136.3 120 57.5
QL01p031168 Quercus lobata HOM05D005168 ORTHO05D006358 1.5e-30 136.3 118 52.5
Cfa012889 Carpinus fangiana HOM05D005168 ORTHO05D006358 2.0e-30 136.0 120 54.2
Ciclev10003775m.g Citrus clementina HOM05D005168 ORTHO05D006358 2.6e-30 135.6 114 56.1
Glyma.03G178900 Glycine max HOM05D005168 ORTHO05D006358 9.7e-30 133.7 112 56.2
Prupe.6G147400 Prunus persica HOM05D005168 ORTHO05D006358 9.7e-30 133.7 121 57.0
SGA_v2.0_scaffold47G17500 Striga asiatica HOM05D005168 ORTHO05D006358 1.7e-29 132.9 120 55.8
Nn3g19859 Nelumbo nucifera HOM05D005168 ORTHO05D006358 6.3e-29 131.0 114 53.5
Phvul.001G175600 Phaseolus vulgaris HOM05D005168 ORTHO05D006358 6.3e-29 131.0 112 55.4
arahy.Tifrunner.gnm1.ann1.TKX6L5 Arachis hypogaea HOM05D005168 ORTHO05D006358 8.2e-29 130.6 120 54.2
SGA_v2.0_scaffold19G08553 Striga asiatica HOM05D005168 ORTHO05D006358 8.2e-29 130.6 120 55.0
Eucgr.C01258 Eucalyptus grandis HOM05D005168 ORTHO05D006358 1.1e-28 130.2 120 53.3
Eucgr.H00960 Eucalyptus grandis HOM05D005168 ORTHO05D006358 1.1e-28 130.2 120 54.2
arahy.Tifrunner.gnm1.ann1.GU7A1M Arachis hypogaea HOM05D005168 ORTHO05D006358 1.4e-28 129.8 120 54.2
VMungo1080G1160 Vigna mungo HOM05D005168 ORTHO05D006358 2.4e-28 129.0 110 53.6
Hma1.2p1_0733F.1_g210170 Hydrangea macrophylla HOM05D005168 ORTHO05D006358 3.1e-28 128.6 117 53.8
TAR622G0958 Trochodendron aralioides HOM05D005168 ORTHO05D006358 4.1e-28 128.3 122 50.8
GSVIVG01009945001 Vitis vinifera HOM05D005168 ORTHO05D006358 5.3e-28 127.9 124 53.2
AL1G32870 Arabidopsis lyrata HOM05D005168 ORTHO05D006358 9.1e-28 127.1 68 88.2
MSTRG.22344 Avicennia marina HOM05D005168 ORTHO05D006358 9.1e-28 127.1 119 52.1
CDE11G0347 Ceratophyllum demersum HOM05D005168 ORTHO05D006358 9.1e-28 127.1 114 53.5
Potri.013G015000 Populus trichocarpa HOM05D005168 ORTHO05D006358 1.6e-27 126.3 120 50.0
Duzib093G1099 Durio zibethinus HOM05D005168 ORTHO05D006358 2.0e-27 125.9 121 52.9
SalBow8G1113 Salvia bowleyana HOM05D005168 ORTHO05D006358 2.6e-27 125.6 116 52.6
Cc10_g01450 Coffea canephora HOM05D005168 ORTHO05D006358 4.5e-27 124.8 116 53.4
CSS0038486 Camellia sinensis var. sinensis HOM05D005168 ORTHO05D006358 5.9e-27 124.4 119 52.1
Gohir.A06G002600 Gossypium hirsutum HOM05D005168 ORTHO05D006358 5.9e-27 124.4 120 51.7
Gohir.D06G005600 Gossypium hirsutum HOM05D005168 ORTHO05D006358 5.9e-27 124.4 120 51.7
Gorai.010G002800 Gossypium raimondii HOM05D005168 ORTHO05D006358 5.9e-27 124.4 120 51.7
CSS0004439 Camellia sinensis var. sinensis HOM05D005168 ORTHO05D006358 1.0e-26 123.6 121 50.4
CAN.G727.4 Capsicum annuum HOM05D005168 ORTHO05D006358 1.7e-26 122.9 120 52.5
Nitab4.5_0003251g0060 Nicotiana tabacum HOM05D005168 ORTHO05D006358 2.9e-26 122.1 116 52.6
Nitab4.5_0000337g0010 Nicotiana tabacum HOM05D005168 ORTHO05D006358 3.8e-26 121.7 116 52.6
Peaxi162Scf00553g00216 Petunia axillaris HOM05D005168 ORTHO05D006358 3.8e-26 121.7 120 51.7
PSO541G4324 Papaver somniferum HOM05D005168 ORTHO05D006358 6.5e-26 120.9 123 49.6
PSO675G5410 Papaver somniferum HOM05D005168 ORTHO05D006358 6.5e-26 120.9 123 49.6
Migut.N03173 Erythranthe guttata HOM05D005168 ORTHO05D006358 8.5e-26 120.6 119 47.9
DCAR_015742 Daucus carota HOM05D005168 ORTHO05D006358 1.5e-25 119.8 119 49.6
Actinidia37940 Actinidia chinensis HOM05D005168 ORTHO05D006358 1.9e-25 119.4 122 48.4
Solyc04g054510.4 Solanum lycopersicum HOM05D005168 ORTHO05D006358 7.2e-25 117.5 120 50.8
PGSC0003DMG400022038 Solanum tuberosum HOM05D005168 ORTHO05D006358 7.2e-25 117.5 120 50.8
Os03g0711700 Oryza sativa ssp. japonica HOM05D005168 ORTHO05D006358 9.4e-25 117.1 116 52.6
ECA238G1857 Erigeron canadensis HOM05D005168 ORTHO05D006358 1.2e-24 116.7 118 47.5
Sc15g0004820 Simmondsia chinensis HOM05D005168 ORTHO05D006358 1.6e-24 116.3 124 47.6
FvH4_1g24780 Fragaria vesca HOM05D005168 ORTHO05D006358 2.7e-24 115.5 124 54.0
FAN23G3095 Fragaria x ananassa HOM05D005168 ORTHO05D006358 4.7e-24 114.8 124 54.0
EL10Ac1g02165 Beta vulgaris HOM05D005168 ORTHO05D006358 1.0e-23 113.6 124 46.0
Lsat_1_v5_gn_2_14120 Lactuca sativa HOM05D005168 ORTHO05D006358 1.8e-23 112.8 118 46.6
AT1G20065 Arabidopsis thaliana HOM05D005168 ORTHO05D006358 4.0e-23 111.7 62 85.5
unitig_22.g6797 Utricularia gibba HOM05D005168 ORTHO05D006358 6.7e-23 110.9 117 47.9
BcaC05g25904 Brassica carinata HOM05D005168 ORTHO05D006358 2.0e-22 109.4 100 62.0
Hund09202 Selenicereus undatus HOM05D005168 ORTHO05D006358 2.0e-22 109.4 124 43.5
vmacro04368 Vaccinium macrocarpon HOM05D005168 ORTHO05D006358 2.6e-22 109.0 111 48.6
HanXRQChr04g0101211 Helianthus annuus HOM05D005168 ORTHO05D006358 3.3e-22 108.6 113 46.0
Sopen04g024330 Solanum pennellii HOM05D005168 ORTHO05D006358 1.7e-21 106.3 106 52.8
Dinv40488 Davidia involucrata HOM05D005168 ORTHO05D006358 2.2e-21 105.9 102 53.9
Zm00001eb054840 Zea mays HOM05D005168 ORTHO05D006358 2.8e-21 105.5 113 49.6
RcHm_v2.0_Chr2g0124111 Rosa chinensis HOM05D005168 ORTHO05D006358 5.3e-20 101.3 121 48.8
AagrBONN_evm.TU.Sc2ySwM_368.3393 Anthoceros agrestis HOM05D005168 ORTHO05D006358 7.0e-20 100.9 118 41.5
SEGI_04309 Sequoiadendron giganteum HOM05D005168 ORTHO05D006358 5.9e-19 97.8 115 43.5
SMO351G0141 Selaginella moellendorffii HOM05D005168 ORTHO05D006358 1.7e-18 96.3 108 42.6
Mapoly0043s0107 Marchantia polymorpha HOM05D005168 ORTHO05D006358 2.9e-18 95.5 123 39.8
Rhsim07G0250400 Rhododendron simsii HOM05D005168 ORTHO05D006358 2.9e-18 95.5 118 41.5
Sabra13G0016900 Salix brachista HOM05D005168 ORTHO05D006358 8.5e-18 94.0 98 45.9
Sabra13G0012900 Salix brachista HOM05D005168 ORTHO05D006358 2.5e-17 92.4 95 46.3
Aqoxy2G01931 Aquilegia oxysepala HOM05D005168 ORTHO05D006358 7.2e-17 90.9 119 43.7
Eucgr.L01842 Eucalyptus grandis HOM05D005168 ORTHO05D006358 1.4e-15 86.7 66 59.1
THA.LOC109116732 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 4.0e-15 85.1 53 73.6
ATR0057G015 Amborella trichopoda HOM05D005168 ORTHO05D006358 7.5e-14 80.9 91 40.7
Pp3c24_7070 Physcomitrium patens HOM05D005168 ORTHO05D006358 2.2e-13 79.3 150 32.0
HPP92_028162 Vanilla planifolia HOM05D005168 ORTHO05D006358 2.8e-13 79.0 87 47.1
TPR.G9182 Trifolium pratense HOM05D005168 ORTHO05D006358 8.3e-13 77.4 83 49.4
CDE09G0329 Ceratophyllum demersum HOM05D005168 ORTHO05D006358 2.4e-12 75.9 74 51.4
Glyma.19G179600 Glycine max HOM05D005168 ORTHO05D006358 2.4e-12 75.9 63 50.8
Cre01.g018000 Chlamydomonas reinhardtii HOM05D005168 ORTHO05D006358 2.0e-11 72.8 121 33.1
Ca_15982_v3 Cicer arietinum L. HOM05D005168 ORTHO05D006358 1.0e-10 70.5 53 56.6
Eucgr.F02832 Eucalyptus grandis HOM05D005168 ORTHO05D006358 1.0e-10 70.5 80 45.0
Aqoxy6G02286 Aquilegia oxysepala HOM05D005168 ORTHO05D006358 1.7e-10 69.7 108 37.0
FAN26G0870 Fragaria x ananassa HOM05D005168 ORTHO05D006358 1.7e-10 69.7 72 54.2
Glyma.06G213500 Glycine max HOM05D005168 ORTHO05D006358 3.8e-10 68.6 67 52.2
Glyma.17G201200 Glycine max HOM05D005168 ORTHO05D006358 1.9e-09 66.2 83 44.6
MD15G1010600 Malus domestica HOM05D005168 ORTHO05D006358 2.5e-09 65.9 54 55.6
Glyma.08G301902 Glycine max HOM05D005168 ORTHO05D006358 7.2e-09 64.3 83 43.4
Glyma.11G172400 Glycine max HOM05D005168 ORTHO05D006358 9.5e-09 63.9 69 50.7
Glyma.08G246200 Glycine max HOM05D005168 ORTHO05D006358 1.6e-08 63.2 48 58.3
Lj4A21T59 Lonicera japonica HOM05D005168 ORTHO05D006358 2.1e-08 62.8 74 43.2
ClCG08G014170 Citrullus lanatus HOM05D005168 ORTHO05D006358 1.8e-07 59.7 40 67.5
MCO15G369 Micromonas commoda HOM05D005168 ORTHO05D006358 3.0e-07 58.9 127 29.1
Ah.01g021000 Amaranthus hybridus HOM05D005168 ORTHO05D006358 2.6e-06 55.8 44 56.8
AUR62040557 Chenopodium quinoa HOM05D005168 ORTHO05D006358 2.6e-06 55.8 44 56.8
ClCG08G014180 Citrullus lanatus HOM05D005168 ORTHO05D006358 3.4e-06 55.5 80 41.2
Cre02.g102400 Chlamydomonas reinhardtii HOM05D006029 ORTHO05D007439 4.4e-06 55.1 115 31.3
SHI17132 Sapria himalayana HOM05D005168 ORTHO05D006358 4.4e-06 55.1 39 56.4
AUR62041475 Chenopodium quinoa HOM05D005168 ORTHO05D006358 7.5e-06 54.3 71 42.3
ECA238G0944 Erigeron canadensis HOM05D005168 ORTHO05D006358 9.8e-06 53.9 72 38.9


User provided reference genes

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