Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G44810 Arabidopsis lyrata HOM05D004437 ORTHO05D005401 3.6e-82 308.1 152 100.0
Carub.0004s2829 Capsella rubella HOM05D004437 ORTHO05D005401 5.6e-75 284.3 152 90.8
CARHR140860 Cardamine hirsuta HOM05D004437 ORTHO05D005401 2.8e-74 282.0 152 90.8
BcaB02g09022 Brassica carinata HOM05D004437 ORTHO05D005401 9.0e-73 276.9 152 88.2
Sp4g27680 Schrenkiella parvula HOM05D004437 ORTHO05D005401 9.0e-73 276.9 152 89.5
C04p06550 Brassica napus HOM05D004437 ORTHO05D005401 4.5e-72 274.6 153 88.9
BolC4t22280H Brassica oleracea HOM05D004437 ORTHO05D005401 4.5e-72 274.6 153 88.9
AT2G45640 Arabidopsis thaliana HOM05D004437 ORTHO05D005401 7.6e-72 273.9 153 88.2
Thhalv10001671m.g Eutrema salsugineum HOM05D004437 ORTHO05D005401 8.4e-71 270.4 152 87.5
A05p05600 Brassica napus HOM05D004437 ORTHO05D005401 9.3e-70 266.9 154 87.7
BraA05t19533Z Brassica rapa HOM05D004437 ORTHO05D005401 3.7e-66 255.0 156 84.0
THA.LOC104802003 Tarenaya hassleriana HOM05D004437 ORTHO05D005401 4.5e-64 248.1 153 83.0
Duzib138G0705 Durio zibethinus HOM05D004437 ORTHO05D005401 1.4e-57 226.5 149 77.2
Lj3g0004540 Lotus japonicus HOM05D004437 ORTHO05D005401 5.3e-57 224.6 151 74.8
Thecc.01G371500 Theobroma cacao HOM05D004437 ORTHO05D005401 5.3e-57 224.6 149 75.8
Gohir.D11G087600 Gossypium hirsutum HOM05D004437 ORTHO05D005401 1.5e-56 223.0 149 75.8
Gohir.A11G083500 Gossypium hirsutum HOM05D004437 ORTHO05D005401 2.0e-56 222.6 149 75.8
Gorai.007G093600 Gossypium raimondii HOM05D004437 ORTHO05D005401 2.0e-56 222.6 149 75.8
Duzib133G0135 Durio zibethinus HOM05D004437 ORTHO05D005401 2.6e-56 222.2 149 76.5
Migut.C00761 Erythranthe guttata HOM05D004437 ORTHO05D005401 3.2e-54 215.3 156 71.8
MELO3C014010.2 Cucumis melo HOM05D004437 ORTHO05D005401 7.2e-54 214.2 153 71.2
CiPaw.01G258300 Carya illinoinensis HOM05D004437 ORTHO05D005401 9.4e-54 213.8 149 75.2
Ciclev10022649m.g Citrus clementina HOM05D004437 ORTHO05D005401 9.4e-54 213.8 152 73.7
HanXRQChr06g0169271 Helianthus annuus HOM05D004437 ORTHO05D005401 9.4e-54 213.8 148 73.6
QL08p051220 Quercus lobata HOM05D004437 ORTHO05D005401 9.4e-54 213.8 150 74.7
CsaV3_3G003440 Cucumis sativus L. HOM05D004437 ORTHO05D005401 1.6e-53 213.0 153 71.2
Atru.chr9.1501 Acer truncatum HOM05D004437 ORTHO05D005401 6.1e-53 211.1 148 70.9
Solyc05g047690.3 Solanum lycopersicum HOM05D004437 ORTHO05D005401 7.9e-53 210.7 156 71.2
Sopen05g027940 Solanum pennellii HOM05D004437 ORTHO05D005401 7.9e-53 210.7 156 71.2
RcHm_v2.0_Chr1g0351651 Rosa chinensis HOM05D004437 ORTHO05D005401 1.8e-52 209.5 135 77.0
TAR374G0190 Trochodendron aralioides HOM05D004437 ORTHO05D005401 1.8e-52 209.5 159 68.6
HanXRQChr04g0122121 Helianthus annuus HOM05D004437 ORTHO05D005401 2.3e-52 209.1 152 72.4
PGSC0003DMG400013695 Solanum tuberosum HOM05D004437 ORTHO05D005401 2.3e-52 209.1 156 71.2
Dinv43738 Davidia involucrata HOM05D004437 ORTHO05D005401 3.0e-52 208.8 156 70.5
TWI23G1180 Tripterygium wilfordii HOM05D004437 ORTHO05D005401 3.0e-52 208.8 150 70.7
CsaV3_3G009410 Cucumis sativus L. HOM05D004437 ORTHO05D005401 3.9e-52 208.4 149 71.8
Lsat_1_v5_gn_7_6120 Lactuca sativa HOM05D004437 ORTHO05D005401 3.9e-52 208.4 151 71.5
Nitab4.5_0007346g0070 Nicotiana tabacum HOM05D004437 ORTHO05D005401 3.9e-52 208.4 156 69.9
Aa31LG1G27110 Aethionema arabicum HOM05D004437 ORTHO05D005401 5.1e-52 208.0 121 86.0
ATR0661G478 Amborella trichopoda HOM05D004437 ORTHO05D005401 6.7e-52 207.6 155 67.7
Nn1g01279 Nelumbo nucifera HOM05D004437 ORTHO05D005401 8.8e-52 207.2 151 70.2
PGR042G1009 Punica granatum HOM05D004437 ORTHO05D005401 8.8e-52 207.2 153 70.6
Eucgr.E01334 Eucalyptus grandis HOM05D004437 ORTHO05D005401 1.5e-51 206.5 128 76.6
Lalb_Chr10g0097651 Lupinus albus HOM05D004437 ORTHO05D005401 5.7e-51 204.5 144 72.2
Manes.05G042100 Manihot esculenta HOM05D004437 ORTHO05D005401 7.4e-51 204.1 145 73.1
GSVIVG01027575001 Vitis vinifera HOM05D004437 ORTHO05D005401 7.4e-51 204.1 140 72.9
Hma1.2p1_2548F.1_g324200 Hydrangea macrophylla HOM05D004437 ORTHO05D005401 9.7e-51 203.8 153 68.0
Sc22g0000410 Simmondsia chinensis HOM05D004437 ORTHO05D005401 9.7e-51 203.8 125 77.6
Dinv32406 Davidia involucrata HOM05D004437 ORTHO05D005401 1.3e-50 203.4 154 68.8
Hma1.2p1_0033F.1_g020790 Hydrangea macrophylla HOM05D004437 ORTHO05D005401 1.3e-50 203.4 152 67.1
Ca_23785_v3 Cicer arietinum L. HOM05D004437 ORTHO05D005401 1.7e-50 203.0 151 68.9
CAN.G1608.2 Capsicum annuum HOM05D004437 ORTHO05D005401 2.2e-50 202.6 159 69.2
CiPaw.12G100900 Carya illinoinensis HOM05D004437 ORTHO05D005401 2.8e-50 202.2 152 67.8
Manes.01G263900 Manihot esculenta HOM05D004437 ORTHO05D005401 2.8e-50 202.2 145 72.4
Atru.chr5.365 Acer truncatum HOM05D004437 ORTHO05D005401 6.3e-50 201.1 139 71.2
MD02G1197700 Malus domestica HOM05D004437 ORTHO05D005401 6.3e-50 201.1 143 73.4
FvH4_7g12660 Fragaria vesca HOM05D004437 ORTHO05D005401 8.2e-50 200.7 135 72.6
Aqoxy5G03951 Aquilegia oxysepala HOM05D004437 ORTHO05D005401 1.1e-49 200.3 139 71.9
Psat4g150640 Pisum sativum HOM05D004437 ORTHO05D005401 1.4e-49 199.9 151 67.5
TWI14G0837 Tripterygium wilfordii HOM05D004437 ORTHO05D005401 1.4e-49 199.9 152 68.4
BcaC01g05120 Brassica carinata HOM05D004437 ORTHO05D005401 1.8e-49 199.5 120 79.2
CANSAT21G0327 Cannabis sativa HOM05D004437 ORTHO05D005401 1.8e-49 199.5 121 78.5
CDE06G2826 Ceratophyllum demersum HOM05D004437 ORTHO05D005401 1.8e-49 199.5 146 68.5
FAN04G1903 Fragaria x ananassa HOM05D004437 ORTHO05D005401 1.8e-49 199.5 155 67.1
Phvul.010G087700 Phaseolus vulgaris HOM05D004437 ORTHO05D005401 1.8e-49 199.5 151 68.2
VMungo0331G2039 Vigna mungo HOM05D004437 ORTHO05D005401 1.8e-49 199.5 151 68.2
FAN10G4017 Fragaria x ananassa HOM05D004437 ORTHO05D005401 2.4e-49 199.1 135 71.9
MSTRG.25195 Avicennia marina HOM05D004437 ORTHO05D005401 3.1e-49 198.7 129 75.2
Os02g0122000 Oryza sativa ssp. japonica HOM05D004437 ORTHO05D005401 3.1e-49 198.7 153 68.6
Actinidia09575 Actinidia chinensis HOM05D004437 ORTHO05D005401 4.1e-49 198.4 155 68.4
Peaxi162Scf00988g00110 Petunia axillaris HOM05D004437 ORTHO05D005401 5.3e-49 198.0 152 68.4
FAN10G0783 Fragaria x ananassa HOM05D004437 ORTHO05D005401 9.1e-49 197.2 135 71.9
Glyma.03G019600 Glycine max HOM05D004437 ORTHO05D005401 9.1e-49 197.2 151 67.5
Prupe.2G150900 Prunus persica HOM05D004437 ORTHO05D005401 9.1e-49 197.2 143 69.9
arahy.Tifrunner.gnm1.ann1.9F5S9Q Arachis hypogaea HOM05D004437 ORTHO05D005401 2.6e-48 195.7 154 66.2
Medtr8g033340 Medicago truncatula HOM05D004437 ORTHO05D005401 2.6e-48 195.7 151 66.9
Potri.002G151500 Populus trichocarpa HOM05D004437 ORTHO05D005401 2.6e-48 195.7 152 71.1
SalBow7G1560 Salvia bowleyana HOM05D004437 ORTHO05D005401 2.6e-48 195.7 148 69.6
BcaC02g12196 Brassica carinata HOM05D004437 ORTHO05D005401 3.4e-48 195.3 105 88.6
MELO3C006160.2 Cucumis melo HOM05D004437 ORTHO05D005401 3.4e-48 195.3 149 69.1
Lsat_1_v5_gn_7_59201 Lactuca sativa HOM05D004437 ORTHO05D005401 3.4e-48 195.3 160 65.6
MD04G1070900 Malus domestica HOM05D004437 ORTHO05D005401 3.4e-48 195.3 146 67.8
Sed0010224 Sechium edule HOM05D004437 ORTHO05D005401 5.9e-48 194.5 148 66.2
arahy.Tifrunner.gnm1.ann1.7T3GCC Arachis hypogaea HOM05D004437 ORTHO05D005401 7.7e-48 194.1 154 65.6
FvH4_5g01190 Fragaria vesca HOM05D004437 ORTHO05D005401 1.0e-47 193.7 155 65.2
Hund14703 Selenicereus undatus HOM05D004437 ORTHO05D005401 1.0e-47 193.7 119 76.5
PSO782G1895 Papaver somniferum HOM05D004437 ORTHO05D005401 1.3e-47 193.4 152 67.1
FAN08G0331 Fragaria x ananassa HOM05D004437 ORTHO05D005401 2.2e-47 192.6 155 65.8
SEGI_23012 Sequoiadendron giganteum HOM05D004437 ORTHO05D005401 2.2e-47 192.6 158 65.2
Haze_08988 Corylus avellana HOM05D004437 ORTHO05D005401 2.9e-47 192.2 169 63.3
RcHm_v2.0_Chr7g0199901 Rosa chinensis HOM05D004437 ORTHO05D005401 2.9e-47 192.2 164 61.6
Cfa012070 Carpinus fangiana HOM05D004437 ORTHO05D005401 5.0e-47 191.4 166 62.7
Prupe.5G087000 Prunus persica HOM05D004437 ORTHO05D005401 5.0e-47 191.4 150 64.0
COL.COLO4_12656 Corchorus olitorius HOM05D004437 ORTHO05D005401 6.5e-47 191.0 149 68.5
PSO478G3285 Papaver somniferum HOM05D004437 ORTHO05D005401 6.5e-47 191.0 152 67.1
Zm00001eb208420 Zea mays HOM05D004437 ORTHO05D005401 6.5e-47 191.0 140 68.6
Potri.003G119300 Populus trichocarpa HOM05D004437 ORTHO05D005401 1.4e-46 189.9 121 76.0
FAN13G0465 Fragaria x ananassa HOM05D004437 ORTHO05D005401 1.9e-46 189.5 161 64.0
ECA236G3516 Erigeron canadensis HOM05D004437 ORTHO05D005401 3.2e-46 188.7 140 68.6
COL.COLO4_23799 Corchorus olitorius HOM05D004437 ORTHO05D005401 7.2e-46 187.6 155 64.5
Cc02_g36970 Coffea canephora HOM05D004437 ORTHO05D005401 1.2e-45 186.8 125 72.0
TAR629G1686 Trochodendron aralioides HOM05D004437 ORTHO05D005401 1.2e-45 186.8 126 70.6
Cpa.g.sc18.165 Carica papaya HOM05D004437 ORTHO05D005401 1.6e-45 186.4 116 81.9
MSTRG.1255 Avicennia marina HOM05D004437 ORTHO05D005401 4.7e-45 184.9 159 62.9
Pp3c14_24540 Physcomitrium patens HOM05D004437 ORTHO05D005401 7.9e-45 184.1 150 63.3
SGA_v2.0_scaffold201G41379 Striga asiatica HOM05D000186 ORTHO05D001124 1.4e-44 183.3 117 74.4
AUR62017329 Chenopodium quinoa HOM05D004437 ORTHO05D005401 1.8e-44 183.0 145 64.8
CSS0011172 Camellia sinensis var. sinensis HOM05D004437 ORTHO05D005401 2.3e-44 182.6 116 75.0
CBR_g4404 Chara braunii HOM05D004437 ORTHO05D005401 3.9e-44 181.8 127 71.7
Mapoly0086s0082 Marchantia polymorpha HOM05D004437 ORTHO05D005401 3.9e-44 181.8 139 66.2
ClCG05G001990 Citrullus lanatus HOM05D004437 ORTHO05D005401 5.2e-44 181.4 170 60.6
AagrBONN_evm.TU.Sc2ySwM_228.779 Anthoceros agrestis HOM05D004437 ORTHO05D005401 6.7e-44 181.0 131 69.5
Hund16975 Selenicereus undatus HOM05D004437 ORTHO05D005401 6.7e-44 181.0 149 65.8
Nitab4.5_0001702g0190 Nicotiana tabacum HOM05D004437 ORTHO05D005401 1.5e-43 179.9 156 64.7
CSS0004475 Camellia sinensis var. sinensis HOM05D004437 ORTHO05D005401 4.4e-43 178.3 114 74.6
Nitab4.5_0001127g0160 Nicotiana tabacum HOM05D004437 ORTHO05D005401 4.4e-43 178.3 158 63.3
SGA_v2.0_scaffold11G05840 Striga asiatica HOM05D000186 ORTHO05D001124 4.4e-43 178.3 116 73.3
AUR62010560 Chenopodium quinoa HOM05D004437 ORTHO05D005401 5.7e-43 177.9 119 68.9
ClCG00G000160 Citrullus lanatus HOM05D004437 ORTHO05D005401 2.2e-42 176.0 153 62.1
ClCG10G003410 Citrullus lanatus HOM05D004437 ORTHO05D005401 2.2e-42 176.0 153 62.1
unitig_578.g16077 Utricularia gibba HOM05D002183 ORTHO05D002169 1.1e-41 173.7 116 71.6
SMO230G0007 Selaginella moellendorffii HOM05D004437 ORTHO05D005401 1.4e-41 173.3 138 65.2
vmacro13357 Vaccinium macrocarpon HOM05D004437 ORTHO05D005401 1.4e-41 173.3 211 50.7
Potri.014G074000 Populus trichocarpa HOM05D004437 ORTHO05D005401 1.8e-41 172.9 139 64.7
Nitab4.5_0004622g0030 Nicotiana tabacum HOM05D004437 ORTHO05D005401 5.3e-41 171.4 120 68.3
AUR62004271 Chenopodium quinoa HOM05D004437 ORTHO05D005401 1.0e-39 167.2 138 65.2
AagrBONN_evm.TU.Sc2ySwM_362.2206 Anthoceros agrestis HOM05D004437 ORTHO05D005401 8.5e-39 164.1 138 63.0
AUR62033386 Chenopodium quinoa HOM05D004437 ORTHO05D005401 1.5e-38 163.3 185 52.4
Zm00001eb230470 Zea mays HOM05D004437 ORTHO05D005401 4.2e-38 161.8 140 62.1
DCAR_006889 Daucus carota HOM05D004437 ORTHO05D005401 5.5e-38 161.4 150 60.7
FAN18G0922 Fragaria x ananassa HOM05D004437 ORTHO05D005401 5.5e-38 161.4 197 48.7
FAN06G3102 Fragaria x ananassa HOM05D004437 ORTHO05D005401 2.1e-37 159.5 135 61.5
EL10Ac1g00948 Beta vulgaris HOM05D004437 ORTHO05D005401 3.6e-37 158.7 128 64.8
FAN01G2781 Fragaria x ananassa HOM05D004437 ORTHO05D005401 1.0e-36 157.1 135 60.7
FAN06G0648 Fragaria x ananassa HOM05D004437 ORTHO05D005401 1.0e-36 157.1 135 60.7
MBI04_g06621_MAGBIO Magnolia biondii HOM05D004437 ORTHO05D005401 1.4e-36 156.8 102 72.5
MBI04_g34692_MAGBIO Magnolia biondii HOM05D004437 ORTHO05D005401 1.4e-36 156.8 102 72.5
MD00G1131900 Malus domestica HOM05D004437 ORTHO05D005401 6.7e-36 154.5 153 53.6
Ah.12g057860 Amaranthus hybridus HOM05D004437 ORTHO05D005401 1.2e-35 153.7 164 51.8
Cre09.g404400 Chlamydomonas reinhardtii HOM05D004437 ORTHO05D005401 3.3e-35 152.1 131 60.3
Sabra03G0083300 Salix brachista HOM05D004437 ORTHO05D005401 7.5e-35 151.0 100 74.0
Sed0003115 Sechium edule HOM05D004437 ORTHO05D005401 2.8e-34 149.1 101 72.3
SHI32178 Sapria himalayana HOM05D004437 ORTHO05D005401 6.3e-34 147.9 134 60.4
Sabra01G0086400 Salix brachista HOM05D004437 ORTHO05D005401 3.1e-33 145.6 141 58.2
TPR.G14692 Trifolium pratense HOM05D004437 ORTHO05D005401 1.2e-29 133.7 136 56.6
HPP92_025880 Vanilla planifolia HOM05D004437 ORTHO05D005401 4.7e-29 131.7 95 66.3
Lj9A574G30 Lonicera japonica HOM05D000186 ORTHO05D001124 1.8e-28 129.8 106 62.3
C03p30120 Brassica napus HOM05D004437 ORTHO05D005401 2.0e-27 126.3 77 80.5
BolC3t15361H Brassica oleracea HOM05D004437 ORTHO05D005401 1.7e-26 123.2 77 79.2
BraA03t11727Z Brassica rapa HOM05D004437 ORTHO05D005401 4.8e-26 121.7 77 77.9
EL10Ac5g12685 Beta vulgaris HOM05D004437 ORTHO05D005401 8.3e-26 120.9 134 48.5
Haze_16715 Corylus avellana HOM05D004437 ORTHO05D005401 1.0e-23 114.0 77 74.0
Haze_26096 Corylus avellana HOM05D004437 ORTHO05D005401 2.9e-23 112.5 120 46.7
Zm00001eb230390 Zea mays HOM05D004437 ORTHO05D004372 5.5e-22 108.2 59 81.4
CDE04G2772 Ceratophyllum demersum HOM05D004437 ORTHO05D005401 2.1e-21 106.3 74 70.3
Glyma.07G081500 Glycine max HOM05D004437 ORTHO05D005401 2.8e-21 105.9 58 84.5
CAN.G126.10 Capsicum annuum HOM05D004437 ORTHO05D005401 6.8e-20 101.3 100 61.0
Actinidia31448 Actinidia chinensis HOM05D004437 ORTHO05D005401 2.0e-19 99.8 124 54.0
Glyma.20G186451 Glycine max HOM05D004437 ORTHO05D005401 5.7e-19 98.2 58 79.3
Oeu058600.1 Olea europaea HOM05D004437 ORTHO05D005401 1.7e-18 96.7 74 67.6
A03p25260 Brassica napus HOM05D004437 ORTHO05D005401 3.1e-17 92.4 64 70.3
DCAR_008576 Daucus carota HOM05D004437 ORTHO05D005401 2.3e-12 76.3 146 38.4
Cfa022890 Carpinus fangiana HOM05D004437 ORTHO05D037942 5.2e-12 75.1 150 34.0
Atru.ctg1434.8 Acer truncatum HOM05D004437 ORTHO05D037942 3.4e-11 72.4 133 33.1
BcaC09g48983 Brassica carinata HOM05D004437 ORTHO05D005401 3.2e-09 65.9 39 74.4


User provided reference genes

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