Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G41480 Arabidopsis lyrata HOM05D006973 ORTHO05D008636 2.0e-51 205.7 118 100.0
AL713U10010 Arabidopsis lyrata HOM05D006973 ORTHO05D008636 2.0e-51 205.7 118 100.0
AT2G42870 Arabidopsis thaliana HOM05D006973 ORTHO05D008636 6.0e-48 194.1 119 95.0
Carub.0004s2531 Capsella rubella HOM05D006973 ORTHO05D008636 1.1e-44 183.3 119 85.7
CARHR137940 Cardamine hirsuta HOM05D006973 ORTHO05D008636 1.3e-42 176.4 118 83.9
BraA05t19306Z Brassica rapa HOM05D006973 ORTHO05D008636 8.3e-42 173.7 118 81.4
BcaC02g12446 Brassica carinata HOM05D006973 ORTHO05D008636 5.4e-41 171.0 118 79.7
BolC4t22017H Brassica oleracea HOM05D006973 ORTHO05D008636 5.4e-41 171.0 118 79.7
A05p03160 Brassica napus HOM05D006973 ORTHO05D008636 9.2e-41 170.2 118 80.5
Sp4g25000 Schrenkiella parvula HOM05D006973 ORTHO05D008636 2.7e-40 168.7 118 84.7
Thhalv10017430m.g Eutrema salsugineum HOM05D006973 ORTHO05D008636 3.5e-40 168.3 123 82.9
BcaB06g29268 Brassica carinata HOM05D006973 ORTHO05D008636 1.0e-39 166.8 118 78.8
BcaB06g29270 Brassica carinata HOM05D006973 ORTHO05D008636 1.0e-39 166.8 118 78.8
C04p03810 Brassica napus HOM05D006973 ORTHO05D008636 1.0e-39 166.8 118 78.8
BcaC02g07217 Brassica carinata HOM05D006973 ORTHO05D008636 1.3e-39 166.4 118 78.8
C04p69950 Brassica napus HOM05D006973 ORTHO05D008636 1.3e-39 166.4 118 78.8
BolC4t28495H Brassica oleracea HOM05D006973 ORTHO05D008636 1.3e-39 166.4 118 78.8
A04p32440 Brassica napus HOM05D006973 ORTHO05D008636 2.3e-39 165.6 118 78.0
BraA04t18696Z Brassica rapa HOM05D006973 ORTHO05D008636 2.3e-39 165.6 118 78.0
A03p23820 Brassica napus HOM05D006973 ORTHO05D008636 1.9e-38 162.5 118 78.0
BraA03t11597Z Brassica rapa HOM05D006973 ORTHO05D008636 1.9e-38 162.5 118 78.0
BcaB01g03419 Brassica carinata HOM05D006973 ORTHO05D008636 1.1e-36 156.8 120 80.0
C03p28410 Brassica napus HOM05D006973 ORTHO05D008636 1.4e-36 156.4 119 79.8
BolC3t15210H Brassica oleracea HOM05D006973 ORTHO05D008636 1.4e-36 156.4 119 79.8
Aa31LG1G24640 Aethionema arabicum HOM05D006973 ORTHO05D008636 6.6e-31 137.5 126 71.4
BcaC02g10032 Brassica carinata HOM05D006973 ORTHO05D008636 8.1e-29 130.6 119 63.0
C04p33710 Brassica napus HOM05D006973 ORTHO05D008636 8.1e-29 130.6 119 63.0
BolC4t24939H Brassica oleracea HOM05D006973 ORTHO05D008636 8.1e-29 130.6 119 63.0
A04p02340 Brassica napus HOM05D006973 ORTHO05D008636 1.1e-28 130.2 119 63.0
BraA04t15963Z Brassica rapa HOM05D006973 ORTHO05D008636 1.4e-28 129.8 119 63.0
Sp5g04010 Schrenkiella parvula HOM05D006973 ORTHO05D008636 1.8e-28 129.4 120 60.8
AL5G40650 Arabidopsis lyrata HOM05D006973 ORTHO05D008636 6.9e-28 127.5 120 65.8
BcaB02g08235 Brassica carinata HOM05D006973 ORTHO05D008636 5.8e-27 124.4 119 60.5
AT3G58850 Arabidopsis thaliana HOM05D006973 ORTHO05D008636 2.2e-26 122.5 120 63.3
BraA09t40577Z Brassica rapa HOM05D006973 ORTHO05D008636 2.2e-26 122.5 119 59.7
Carub.0005s2563 Capsella rubella HOM05D006973 ORTHO05D008636 3.8e-26 121.7 122 65.6
CARHR169260 Cardamine hirsuta HOM05D006973 ORTHO05D008636 4.9e-26 121.3 120 60.0
Thhalv10006323m.g Eutrema salsugineum HOM05D006973 ORTHO05D008636 4.9e-26 121.3 120 58.3
A09p51360 Brassica napus HOM05D006973 ORTHO05D008636 6.4e-26 120.9 119 58.8
BcaC07g40229 Brassica carinata HOM05D006973 ORTHO05D008636 1.2e-24 116.7 120 59.2
BcaC07g40299 Brassica carinata HOM05D006973 ORTHO05D008636 5.6e-22 107.8 110 60.9
C08p34140 Brassica napus HOM05D006973 ORTHO05D008636 5.6e-22 107.8 110 60.9
BolC8t51013H Brassica oleracea HOM05D006973 ORTHO05D008636 5.6e-22 107.8 110 60.9
Aa31LG10G13410 Aethionema arabicum HOM05D006973 ORTHO05D008636 4.9e-18 94.7 125 57.6
Nitab4.5_0003934g0010 Nicotiana tabacum HOM05D006973 ORTHO05D008636 2.1e-16 89.4 61 68.9
Duzib147G0021 Durio zibethinus HOM05D006973 ORTHO05D008636 4.6e-16 88.2 102 53.9
PGSC0003DMG400017344 Solanum tuberosum HOM05D006973 ORTHO05D008636 2.3e-15 85.9 61 65.6
CAN.G585.39 Capsicum annuum HOM05D006973 ORTHO05D008636 3.9e-15 85.1 61 63.9
Prupe.3G172700 Prunus persica HOM05D006973 ORTHO05D008636 3.9e-15 85.1 61 65.6
Cfa021245 Carpinus fangiana HOM05D006973 ORTHO05D008636 5.1e-15 84.7 61 62.3
Nitab4.5_0001675g0100 Nicotiana tabacum HOM05D006973 ORTHO05D008636 6.7e-15 84.3 124 43.5
Solyc07g056360.1 Solanum lycopersicum HOM05D006973 ORTHO05D008636 6.7e-15 84.3 61 63.9
Sopen07g029740 Solanum pennellii HOM05D006973 ORTHO05D008636 6.7e-15 84.3 61 63.9
Gohir.A11G060500 Gossypium hirsutum HOM05D006973 ORTHO05D008636 8.7e-15 84.0 61 65.6
Thecc.01G161800 Theobroma cacao HOM05D006973 ORTHO05D008636 8.7e-15 84.0 95 51.6
FAN02G1229 Fragaria x ananassa HOM05D006973 ORTHO05D008636 1.1e-14 83.6 119 44.5
QL08p044096 Quercus lobata HOM05D006973 ORTHO05D008636 1.1e-14 83.6 60 63.3
Haze_13497 Corylus avellana HOM05D006973 ORTHO05D008636 1.9e-14 82.8 59 61.0
Glyma.02G286900 Glycine max HOM05D006973 ORTHO05D008636 1.9e-14 82.8 89 46.1
Gohir.D11G064600 Gossypium hirsutum HOM05D006973 ORTHO05D008636 3.3e-14 82.0 61 63.9
Gorai.007G069800 Gossypium raimondii HOM05D006973 ORTHO05D008636 3.3e-14 82.0 61 63.9
Sabra02G0048600 Salix brachista HOM05D006973 ORTHO05D008636 3.3e-14 82.0 99 47.5
Glyma.14G028000 Glycine max HOM05D006973 ORTHO05D008636 4.3e-14 81.6 61 57.4
Manes.02G084300 Manihot esculenta HOM05D006973 ORTHO05D008636 4.3e-14 81.6 61 62.3
Phvul.008G191400 Phaseolus vulgaris HOM05D006973 ORTHO05D008636 4.3e-14 81.6 61 57.4
RcHm_v2.0_Chr2g0151491 Rosa chinensis HOM05D006973 ORTHO05D008636 4.3e-14 81.6 61 62.3
VMungo0647G1950 Vigna mungo HOM05D006973 ORTHO05D008636 4.3e-14 81.6 61 57.4
Atru.chr6.2093 Acer truncatum HOM05D006973 ORTHO05D008636 5.6e-14 81.3 61 62.3
Ciclev10033026m.g Citrus clementina HOM05D006973 ORTHO05D008636 9.6e-14 80.5 61 62.3
Potri.005G201500 Populus trichocarpa HOM05D006973 ORTHO05D008636 1.3e-13 80.1 100 45.0
FvH4_6g38230 Fragaria vesca HOM05D006973 ORTHO05D008636 1.6e-13 79.7 119 43.7
FAN14G5571 Fragaria x ananassa HOM05D006973 ORTHO05D008636 1.6e-13 79.7 119 43.7
CANSAT64G0305 Cannabis sativa HOM05D006973 ORTHO05D008636 2.1e-13 79.3 60 61.7
Duzib187G1733 Durio zibethinus HOM05D006973 ORTHO05D008636 2.1e-13 79.3 61 60.7
Peaxi162Scf00111g00009 Petunia axillaris HOM05D006973 ORTHO05D008636 3.7e-13 78.6 115 42.6
FAN05G1052 Fragaria x ananassa HOM05D006973 ORTHO05D008636 4.8e-13 78.2 115 43.5
FAN09G4519 Fragaria x ananassa HOM05D006973 ORTHO05D008636 4.8e-13 78.2 115 43.5
Lalb_Chr17g0348291 Lupinus albus HOM05D006973 ORTHO05D008636 8.1e-13 77.4 61 55.7
Nn3g20922 Nelumbo nucifera HOM05D006973 ORTHO05D008636 1.1e-12 77.0 61 54.1
Nn6g34359 Nelumbo nucifera HOM05D006973 ORTHO05D008636 1.1e-12 77.0 61 54.1
LjContig00310g0018130 Lotus japonicus HOM05D006973 ORTHO05D008636 1.4e-12 76.6 128 43.8
Dinv21566 Davidia involucrata HOM05D006973 ORTHO05D008636 1.8e-12 76.3 95 42.1
Cc05_g09430 Coffea canephora HOM05D006973 ORTHO05D008636 2.4e-12 75.9 54 64.8
Medtr5g091690 Medicago truncatula HOM05D006973 ORTHO05D008636 3.1e-12 75.5 61 54.1
PGR042G1786 Punica granatum HOM05D006973 ORTHO05D008636 3.1e-12 75.5 58 58.6
TPR.G12665 Trifolium pratense HOM05D006973 ORTHO05D008636 4.0e-12 75.1 61 52.5
Lalb_Chr04g0248771 Lupinus albus HOM05D006973 ORTHO05D008636 9.0e-12 73.9 61 52.5
TAR629G2498 Trochodendron aralioides HOM05D006973 ORTHO05D008636 1.5e-11 73.2 59 54.2
Aqoxy4G00147 Aquilegia oxysepala HOM05D006973 ORTHO05D008636 2.0e-11 72.8 61 50.8
ClCG09G022400 Citrullus lanatus HOM05D006973 ORTHO05D008636 2.6e-11 72.4 118 39.8
Potri.002G060100 Populus trichocarpa HOM05D006973 ORTHO05D008636 2.6e-11 72.4 124 39.5
MELO3C014471.2 Cucumis melo HOM05D006973 ORTHO05D008636 5.8e-11 71.2 61 54.1
CsaV3_6G038070 Cucumis sativus L. HOM05D006973 ORTHO05D008636 5.8e-11 71.2 61 54.1
Oeu040038.1 Olea europaea HOM05D006973 ORTHO05D008636 5.8e-11 71.2 61 57.4
THA.LOC104803237 Tarenaya hassleriana HOM05D006973 ORTHO05D008636 9.9e-11 70.5 59 54.2
Lalb_Chr10g0106711 Lupinus albus HOM05D006973 ORTHO05D008636 1.7e-10 69.7 61 47.5
MBI07_g21782_MAGBIO Magnolia biondii HOM05D006973 ORTHO05D008636 2.9e-10 68.9 61 52.5
MBI07_g41313_MAGBIO Magnolia biondii HOM05D006973 ORTHO05D008636 2.9e-10 68.9 61 52.5
DCAR_013315 Daucus carota HOM05D006973 ORTHO05D008636 6.4e-10 67.8 121 40.5
Actinidia32515 Actinidia chinensis HOM05D006973 ORTHO05D008636 8.4e-10 67.4 94 43.6
Rhsim06G0116300 Rhododendron simsii HOM05D006973 ORTHO05D008636 1.9e-09 66.2 103 36.9
Oeu020059.1 Olea europaea HOM05D006973 ORTHO05D008636 4.2e-09 65.1 61 52.5
Sed0009997 Sechium edule HOM05D006973 ORTHO05D008636 4.2e-09 65.1 109 40.4
arahy.Tifrunner.gnm1.ann1.D7Q1BT Arachis hypogaea HOM05D006973 ORTHO05D008636 9.3e-09 63.9 54 51.9
arahy.Tifrunner.gnm1.ann1.SG1KTY Arachis hypogaea HOM05D006973 ORTHO05D008636 9.3e-09 63.9 54 51.9
CSS0041461 Camellia sinensis var. sinensis HOM05D006973 ORTHO05D008636 1.6e-08 63.2 62 46.8
arahy.Tifrunner.gnm1.ann1.9T2B0R Arachis hypogaea HOM05D006973 ORTHO05D008636 6.0e-08 61.2 48 56.2
MSTRG.14293 Avicennia marina HOM05D006973 ORTHO05D008636 1.9e-06 56.2 122 33.6
CDE04G0049 Ceratophyllum demersum HOM05D006973 ORTHO05D008636 3.3e-06 55.5 57 43.9


User provided reference genes

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