Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G41110 Arabidopsis lyrata HOM05D008991 ORTHO05D010442 5.0e-227 791.6 698 100.0
AT2G42560 Arabidopsis thaliana HOM05D008991 ORTHO05D010442 1.7e-174 617.1 702 79.1
Carub.0004s2501 Capsella rubella HOM05D008991 ORTHO05D010442 4.1e-144 516.2 703 77.7
Sp4g24690 Schrenkiella parvula HOM05D008991 ORTHO05D010442 1.4e-120 438.0 707 69.7
CARHR137700 Cardamine hirsuta HOM05D008991 ORTHO05D010442 3.6e-108 396.7 688 68.9
BcaB01g03456 Brassica carinata HOM05D008991 ORTHO05D010442 1.6e-84 318.2 739 37.8
C04p69790 Brassica napus HOM05D008991 ORTHO05D010442 8.9e-75 285.8 752 60.1
BcaC02g07231 Brassica carinata HOM05D008991 ORTHO05D010442 1.6e-71 275.0 793 57.4
Thhalv10017645m.g Eutrema salsugineum HOM05D008991 ORTHO05D010442 5.4e-56 223.4 239 68.2
BolC4t28480H Brassica oleracea HOM05D008991 ORTHO05D010442 4.6e-55 220.3 714 56.3
BcaB06g29254 Brassica carinata HOM05D008991 ORTHO05D010442 3.3e-53 214.2 792 55.8
BcaNung03228 Brassica carinata HOM05D008991 ORTHO05D010442 1.7e-49 201.8 738 52.7
BraA04t18682Z Brassica rapa HOM05D008991 ORTHO05D010442 2.4e-48 198.0 707 59.8
Aa31LG1G24360 Aethionema arabicum HOM05D008991 ORTHO05D010442 9.9e-42 176.0 730 51.8
A04p32280 Brassica napus HOM05D008991 ORTHO05D010442 5.1e-38 163.7 158 65.2
TWI59G0499 Tripterygium wilfordii HOM05D012920 ORTHO05D012188 3.8e-17 94.4 215 39.1
BraA03t11586Z Brassica rapa HOM05D022729 ORTHO05D010442 1.4e-14 85.9 99 58.6
Cpa.g.sc209.19 Carica papaya HOM05D008991 ORTHO05D010442 2.3e-14 85.1 163 44.2
BcaNung05214 Brassica carinata HOM05D008991 ORTHO05D010442 3.0e-14 84.7 170 44.7
Actinidia30443 Actinidia chinensis HOM05D008991 ORTHO05D010442 5.1e-14 84.0 147 44.9
Ca_01464_v3 Cicer arietinum L. HOM05D012920 ORTHO05D012188 1.1e-13 82.8 222 33.8
BcaC01g05275 Brassica carinata HOM05D022729 ORTHO05D010442 2.0e-13 82.0 98 57.1
C03p28270 Brassica napus HOM05D022729 ORTHO05D010442 2.0e-13 82.0 98 57.1
Dinv15461 Davidia involucrata HOM05D008991 ORTHO05D010442 2.0e-13 82.0 146 42.5
A03p23710 Brassica napus HOM05D022729 ORTHO05D010442 2.6e-13 81.6 99 56.6
BolC3t15200H Brassica oleracea HOM05D022729 ORTHO05D010442 4.4e-13 80.9 98 56.1
Lsat_1_v5_gn_8_139801 Lactuca sativa HOM05D008991 ORTHO05D010442 7.4e-13 80.1 176 38.1
Potri.019G090300 Populus trichocarpa HOM05D026498 ORTHO05D010442 9.7e-13 79.7 150 40.7
CiPaw.04G131500 Carya illinoinensis HOM05D008991 ORTHO05D010442 1.3e-12 79.3 174 37.9
Potri.013G118600 Populus trichocarpa HOM05D026498 ORTHO05D010442 1.3e-12 79.3 161 38.5
Cfa014713 Carpinus fangiana HOM05D008991 ORTHO05D010442 4.8e-12 77.4 197 34.0
Oeu036098.1 Olea europaea HOM05D008991 ORTHO05D010442 4.8e-12 77.4 186 36.6
Migut.H02156 Erythranthe guttata HOM05D008991 ORTHO05D010442 6.3e-12 77.0 148 42.6
Sabra19G0104000 Salix brachista HOM05D026498 ORTHO05D010442 8.2e-12 76.6 162 38.3
VMungo0251G0890 Vigna mungo HOM05D013591 ORTHO05D012188 8.2e-12 76.6 73 54.8
Haze_13344 Corylus avellana HOM05D008991 ORTHO05D010442 2.4e-11 75.1 192 37.5
PGR142G1329 Punica granatum HOM05D008991 ORTHO05D010442 2.4e-11 75.1 141 39.7
Solyc07g053360.4 Solanum lycopersicum HOM05D011296 ORTHO05D013264 2.4e-11 75.1 172 38.4
QL08p041343 Quercus lobata HOM05D008991 ORTHO05D010442 3.1e-11 74.7 216 34.7
Ciclev10014817m.g Citrus clementina HOM05D008991 ORTHO05D010442 5.3e-11 73.9 210 33.8
Sabra19G0100600 Salix brachista HOM05D026498 ORTHO05D010442 1.2e-10 72.8 162 37.0
CAN.G1360.5 Capsicum annuum HOM05D011296 ORTHO05D013264 1.5e-10 72.4 175 37.1
CANSAT64G0119 Cannabis sativa HOM05D008991 ORTHO05D010442 4.5e-10 70.9 196 35.2
arahy.Tifrunner.gnm1.ann1.ZWAD2N Arachis hypogaea HOM05D013591 ORTHO05D012188 1.0e-09 69.7 95 48.4
Sopen07g027330 Solanum pennellii HOM05D011296 ORTHO05D013264 1.0e-09 69.7 157 38.9
Peaxi162Scf00469g00010 Petunia axillaris HOM05D011296 ORTHO05D010442 1.3e-09 69.3 214 31.8
CiPaw.03G186100 Carya illinoinensis HOM05D008991 ORTHO05D010442 1.7e-09 68.9 159 38.4
Psat5g275760 Pisum sativum HOM05D012920 ORTHO05D012188 1.7e-09 68.9 204 31.9
MELO3C019755.2 Cucumis melo HOM05D024384 ORTHO05D010442 2.2e-09 68.6 204 31.9
Sc21g0003130 Simmondsia chinensis HOM05D011296 ORTHO05D013264 2.9e-09 68.2 242 31.8
Psat5g276240 Pisum sativum HOM05D012920 ORTHO05D012188 6.5e-09 67.0 90 44.4
Cc05_g08110 Coffea canephora HOM05D008991 ORTHO05D010442 1.4e-08 65.9 142 38.7
CsaV3_6G018720 Cucumis sativus L. HOM05D024384 ORTHO05D010442 1.4e-08 65.9 211 30.8
Gohir.D11G064300 Gossypium hirsutum HOM05D020995 ORTHO05D010442 1.4e-08 65.9 235 28.9
Sed0024903 Sechium edule HOM05D024384 ORTHO05D010442 1.4e-08 65.9 190 34.2
Gorai.007G069500 Gossypium raimondii HOM05D020995 ORTHO05D010442 3.2e-08 64.7 238 28.6
COL.COLO4_36295 Corchorus olitorius HOM05D020995 ORTHO05D010442 7.2e-08 63.5 186 34.4
Hma1.2p1_0178F.1_g079010 Hydrangea macrophylla HOM05D011296 ORTHO05D013264 7.2e-08 63.5 177 36.2
Lj3g0021605 Lotus japonicus HOM05D012920 ORTHO05D012188 1.2e-07 62.8 78 43.6
Manes.13G139000 Manihot esculenta HOM05D012920 ORTHO05D012188 1.6e-07 62.4 229 28.4
TPR.G11587 Trifolium pratense HOM05D012920 ORTHO05D012188 4.7e-07 60.8 249 35.7
Phvul.011G135600 Phaseolus vulgaris HOM05D012920 ORTHO05D012188 1.4e-06 59.3 148 33.1
Gohir.A11G060200 Gossypium hirsutum HOM05D020995 ORTHO05D010442 3.9e-06 57.8 264 26.1
Nitab4.5_0014887g0020 Nicotiana tabacum HOM05D011296 ORTHO05D013264 3.9e-06 57.8 217 30.0
VMungo1127G0688 Vigna mungo HOM05D012920 ORTHO05D012188 6.7e-06 57.0 207 29.0


User provided reference genes

Program Settings